RNA id: XM_026921023.2


Basic Information

Item Value
RNA id XM_026921023.2
length 3728
RNA type mRNA
GC content 0.51
exon number 16
gene id phc2a
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9679602 ~ 9728769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTTTCTGATCAGGATGCAAGAAGTCTGTCCTGCCGGACAGAGCCGCACTCAGAAATGGTGTAGGATATCAGGGAAGGAACGAGACACTGAAGCAAGGGAAGAGGACAAGGTCTATGTGGAAGgtgttgTACAGAGAAGCAGCAGTCGTGGATCGAGCCCAGGAGGGCGTAGAGCTGCCATGGAGAGGGCGCAGGCCTCTGTGAGCTCCGGCTCTAGTGCACCTGCCCCCAGCAACCCCATCATCACTTCCAGCTCCAACAGCAACAGCCAGGGAATGACCAGTGTCAGCTCCAGTGTCagctccagtgtcagtgccagCAGCAGACAGCAGACTCTGCCACAGATATCAGTGTATGGGGGAATCCCTGACAGGCAGACAGTACAGgTGATTCAGCAGGCCCTGCACAGGCAGCCCAGTACTGCAGCTCAGTACTTGCAGCAGATGTACGCAGCACAGCAGCAGCACCTCATGCTGCAGACCGCCGCTCTCCAGCAACAGCACCTGAGTTTAGCTGCGGTGCAAcagGCCAGCATTGTAGCAGGAAGACAGAACTGCAGTCAGAGCGGAGCTGCATCTCAGCAGGCCTTATCCTCTCAGACCACTATCAAACTGGCTAGCTCTCCTGCAGCGGCAGCTCAGTTGATCAGCAGGGCCCAGGGGGTGAACCCCTCTCCGGTCAGCATTACCCAGCAGGCTGTGCTCCTTGGGAACTCATCCACCCCTACTCTCACTGCCAGCCAAGCACAGATGTACCTGCGTGCACAGATGGCACAGCAAAATAGCCTTGTGCAAGTAGCTAGGAGCCTAGGCCGTGCTGTTCCTTTGTCCCCCCAGCTCATACTCACTCCGACCGCCACAGTCACTGCCGTCCAGCCTGAGGCCTCATCGCAGTCAGTCAACCTCCAGTCAACCAGCCCACAGATGCAGAACCTGGTGTTGTGTagccagcagggggcagtggcctcctcctcctccacccctCAGCCCCAACTACACGGGCTCAGTGTAAAGCAAAGTAGTGGAGGAGCAACTCAGATGGCTCTTCCCAGCTTGCCTGTGCCCCAGCTAAAGAGTCCCAGCTCTCAGGCTCTGGGTCAGCAGGGAGTGAAGACCAGCCTGGCAGATGCTTCATCAGAGCCAGTGAAGACGAGTGATGGTGTCAGTGAGATGAGTGCACGTGTGATCAGTGTGAGCCACAACATGGGCACAGCAACCAACCATCCCCTCATCAATACTGCATATGCACAAATTCAGACCCATCAACTGCTCCAGCAACACAAGCAGCAGTTTGTGATCCAGCAACAATCCCAGGTGTCTCAGCCCAGCGTCCAGCCCCAAGGCCAAGCTGCGCAACCCGTGGCCATCCAACCTGCTTTAGCAGGCCAACCGTGTGCCATCCCTGTGCTGCCCAAACCACCCGCTCAGCAAGCCGCCATCTTCCATTCGACTGTGAGTCCTAGGATGCTCAATGGTCAGTCTCCCTTGTTAAATCCCAGCAAAGTCAAACAGGTGCAGCTAACAGCCGTCAACCTCCATTTCCAGGCTCCGCCAACCCAAACTGCAGTGACACAGGATAATGCTGATAAGGGCAACGCTGTTCCTCCTGCCATTAGAGATGACTGCCTTGGCCAAAGTGGGCAGCAGATGCTAACCCAACCAACGCAAGAGCCAGCCAGGACTGAACAATGCTTGTATGATCACAACCAGCTGACAGTGAACGCAGAAGGCCCAGACACTGCAGTTCCTGTTCCTGCGGCtgcactggtgtgtgtgaatggtaaCCCAGCCATGACGTCGGGCAGCGGGAACAACGCGCCCACCGTGACTGGCAGCACCCCGCACAACGGCCACAGCAAAACCCCACAAGCCATCGTCAAGCCCCAGATCCTCACTCATGTGATCGAGGGATTTGTTATCCAGGAGGGAGCAGAGCCATTCCCCGTGGAGCGGCCATCGTTACTCCTCGAGAACGtcaaaaagcacaaacagcAGCAGTCTCACTCAGACATGGAGAAGAAGGTTCAAGACTCTCACACAGCAGACTCAGAGATGGAGGATCTCTCACAGCAAGAGTTAAAGAACAGGGAGAAGGAACCAACGCTCTCTTGTGAACTGTGTGGGAAAGTCGACTTCGCTTACAACTTCAAGAGATCAAAGCGGTTCTGTTCTACAGTATGTGCAAAAAGATATAATGTGGGATGCACAAAACGAATGGGTCTTTTTCCAAGACGGCCAACGCCAGAGAACCCCAAGAAGCAGAGAGCCTCCAGTAACCATCATCACAACACTAGTTCAGAGGCCAAAAAACAAaATCCCAGCAGTCAGACGGGCGCAGTGGGCTCAGCACCCTCCCCACGTCTCTCACAGCTGGGTCACGGAGAGTCCAGCCAGTGTTCAGACATGTCGAGTTATGAAGAACCTCCATCTCCCGTGTCCATAGCCAGCTCTGGAGCTCGGAGGCTGCgaaaggagagaggaggagatcATGGCGAGAACCACAGCAGGGAGCTGCCCCTCCTCACGCAGCACTTCATGCCCAGCGACCCCGCCAAATGGAACGTGGAGGACGTTTATGAGTTTATCTGCTCACTACCAGGCTGCCAGGAGATAGCTGAGGAGTTCCGTGCTCAGGAGATCGATGGCCAGGCCTTGCTGCTACTGAAAGAAGACCATCTCATGAGCACCATGAACATCAAACTGGGGCCTGCACTGAAAATCTTCGCCCGCATCAGTATGCTCAAAGACTCCTAGCCTCTCCTTTGGGACTGAATACACCCAAAACACCTGCACTGATTTATCTTCATATCCCATTATGGTTATGAATCCAGGGGACCTGTGCTATAGCTCAGAGCCCCAAGAGCTTAAGGCTGGTCTTTTCTTCACAGCTTGCAGGGATGCGAGATGTGACGTTCAGTCTGGTTAGCCTAGTCATGACCCCATAGAGGAACAATCAGCTTGCTGGAATGCAAGCACAAATATCTAGGCAACTGATTTAAATTATGTTCACAAGTGGCTGATTCTGCACACCAGGAAAAGTTAATAAAATGCATCATTGCAACAggtttacatttcatttcaggtTTACATTTTAGAActggattcttcttcttcttttttttttttacattttacatgccAAGGACTTGTTCAGATGTTCAATGAGTTTAGTTTCTTtacagatttgttttaaatatgaaaatgaaacttGTGTGGTAGCAAACAGTGAACAAGATATCTGAAAGATCAACATGTCCTCTGTTCATTGCTTATATTTATACTGACAGTGCTGGGATTATGACCAGTGTGAGTAAGTACAtgtgagatagtgtgtgtgtagataaaaaggaaaaaataatcaatatgtgCCTGCCATGTTCCTATCATCCCAAAGACTTAAATTTCAACCCTTCTGCATCAGCCACACAATATTTCAGCATACAGATGGACACAGCTTTTGCTCACTGCTAGTTGAGGAACAGCTGTGTTATAGCCTGCACCAGTCAGGATACAGGATCTTACTGATCACATTGACCTTTtgcttgttttaaaatgaatgtggcccaaaattaatttctttgCAAAGTTGTTAGTATTCTAATTTTCACATGATCAGTATTCTATTTAttaagagaaagtgtgtgtgatagagttTTGTATTTGGGAAGAATTAAACTTTGTCAGTATTGGACAGTTTTTCTGTCCGATTTGACCTGGAAGGGAAGGAT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298391 lncRNA upstream 23214 9654882 ~ 9656393 (+) True G252102
TU298258 lncRNA upstream 135967 9542129 ~ 9543640 (+) True G251988
TU298189 lncRNA upstream 240811 9438560 ~ 9438796 (+) True G251921
XR_004579723.1 lncRNA upstream 271909 9406507 ~ 9407698 (+) True LOC117599255
TU298028 lncRNA upstream 273219 9403851 ~ 9406388 (+) True G251800
XR_004579703.1 lncRNA downstream 215793 9944562 ~ 9946932 (+) True LOC117599238
TU298668 lncRNA downstream 269915 9998684 ~ 10001448 (+) True G252336
TU298760 lncRNA downstream 435939 10164708 ~ 10165255 (+) True G252389
TU298798 lncRNA downstream 437780 10166549 ~ 10166791 (+) True G252422
TU299103 lncRNA downstream 811678 10540447 ~ 10540656 (+) True G252674
XM_026921378.2 mRNA upstream 189745 9470072 ~ 9489862 (+) True spsb1
XM_026921091.2 mRNA upstream 261828 9411473 ~ 9417779 (+) True ca6
XM_026921233.2 mRNA upstream 572384 9068705 ~ 9107223 (+) False noc2l
XM_034312117.1 mRNA upstream 572384 9068866 ~ 9107223 (+) True noc2l
XM_026920737.2 mRNA upstream 658462 9006742 ~ 9021145 (+) True perm1
XM_026921102.2 mRNA downstream 63009 9791778 ~ 9847969 (+) True ephb2a
XM_034312162.1 mRNA downstream 63009 9791778 ~ 9847969 (+) False ephb2a
XM_026921227.2 mRNA downstream 127604 9856373 ~ 9867077 (+) True lrrc38a
XM_026920748.2 mRNA downstream 144242 9873011 ~ 9920124 (+) True vps13d
XM_026921280.2 mRNA downstream 257813 9986582 ~ 9997859 (+) False rcc2
TU297603 other upstream 1053745 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 1321507 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 1342108 8312773 ~ 8337499 (+) False atp13a2
XR_004579706.1 other upstream 1342108 8313817 ~ 8337499 (+) False atp13a2
TU297455 other upstream 1438840 8240018 ~ 8240767 (+) False si:ch211-197l9.2
XR_004579736.1 other downstream 563837 10292606 ~ 10339205 (+) False kcnab2b
TU299368 other downstream 1120082 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 1143260 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 1267840 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 1502660 11231429 ~ 11237362 (+) True oard1

Expression Profile