Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026921034.2 |
| length | 1153 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 2 |
| gene id | her12 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 10054823 ~ 10056095 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0005488 | binding | molecular_function |
| id | description |
|---|---|
| K06055 | HES5; hairy and enhancer of split 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU298668 | lncRNA | upstream | 53375 | 9998684 ~ 10001448 (+) | True | G252336 |
| XR_004579703.1 | lncRNA | upstream | 107891 | 9944562 ~ 9946932 (+) | True | LOC117599238 |
| TU298408 | lncRNA | upstream | 324768 | 9708095 ~ 9730055 (+) | True | G252116 |
| TU298391 | lncRNA | upstream | 398430 | 9654882 ~ 9656393 (+) | True | G252102 |
| TU298258 | lncRNA | upstream | 511183 | 9542129 ~ 9543640 (+) | True | G251988 |
| TU298760 | lncRNA | downstream | 108613 | 10164708 ~ 10165255 (+) | True | G252389 |
| TU298798 | lncRNA | downstream | 110454 | 10166549 ~ 10166791 (+) | True | G252422 |
| TU299103 | lncRNA | downstream | 484352 | 10540447 ~ 10540656 (+) | True | G252674 |
| TU299104 | lncRNA | downstream | 485175 | 10541270 ~ 10541479 (+) | True | G252675 |
| TU299087 | lncRNA | downstream | 564554 | 10620649 ~ 10623909 (+) | True | G252665 |
| XM_026921173.2 | mRNA | upstream | 11520 | 10041768 ~ 10043303 (+) | True | LOC113530826 |
| XM_026921160.2 | mRNA | upstream | 22121 | 10031320 ~ 10032702 (+) | True | LOC113530819 |
| XM_026920889.2 | mRNA | upstream | 38840 | 10003776 ~ 10015983 (+) | False | rnf207b |
| XM_026920573.2 | mRNA | downstream | 96226 | 10152321 ~ 10164663 (+) | True | zgc:154075 |
| XM_026920105.2 | mRNA | downstream | 125397 | 10181492 ~ 10189088 (+) | True | LOC113530271 |
| XM_026921374.2 | mRNA | downstream | 144949 | 10201044 ~ 10245845 (+) | True | pax7b |
| XM_034312039.1 | mRNA | downstream | 144949 | 10201044 ~ 10245845 (+) | False | pax7b |
| XM_026921375.2 | mRNA | downstream | 144949 | 10201044 ~ 10245845 (+) | False | pax7b |
| TU297603 | other | upstream | 1428961 | 8621005 ~ 8625862 (+) | False | LOC113530359 |
| TU297540 | other | upstream | 1696723 | 8352789 ~ 8358100 (+) | False | spen |
| XR_004579705.1 | other | upstream | 1717324 | 8312773 ~ 8337499 (+) | False | atp13a2 |
| XR_004579706.1 | other | upstream | 1717324 | 8313817 ~ 8337499 (+) | False | atp13a2 |
| TU297455 | other | upstream | 1814056 | 8240018 ~ 8240767 (+) | False | si:ch211-197l9.2 |
| XR_004579736.1 | other | downstream | 236511 | 10292606 ~ 10339205 (+) | False | kcnab2b |
| TU299368 | other | downstream | 792756 | 10848851 ~ 10851345 (+) | False | b4galt3 |
| XR_004579720.1 | other | downstream | 815934 | 10872029 ~ 10912533 (+) | False | atp2b3b |
| XR_003403205.1 | other | downstream | 940514 | 10996609 ~ 10996743 (+) | True | LOC113530991 |
| TU299671 | other | downstream | 1175334 | 11231429 ~ 11237362 (+) | True | oard1 |
