RNA id: XM_026921051.2


Basic Information

Item Value
RNA id XM_026921051.2
length 6644
RNA type mRNA
GC content 0.49
exon number 28
gene id tns2a
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14573892 ~ 14614655 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCTGAGCTCAGAGTTTGAGGGAAAGTAAACATGAGCGTCAGTAGAACAGTAGCTGCTGCACACTGTTTACACTAAACTGGaatgtattaaatgtgtttaaacgCCACCATTTTAAACCTGCGTTAGTGCTGTTTTGAGGAACAACATGAGCAAGGCAGGGAAGGGCGAGCCCCATGAGTTTAAGGAAAAAACCTTTAAGAAGAAGCGCCAGTGTGGGGTGTGCAAGCAAAACATAGAAAGTCTGGGATCCTTCTGCCGAGTCTGCAAAACAGCCACTCACAAGAAATGTGAAAGTAAGGCCAGCTCACCCTGTGTCCCGGCCCCATCCTCTGATTTGCAGCGAAGAGGAACGACCTCCTCTCGACACATTCAGCATCTGGGCTCGACCAAATCTCTGACATACAACAAACCGAGAAGTACTCTACCCAGGAGTCTAAGTGTGGATCGGGTGATGGACAGGGTGATGGAGCGCCACTACGACTTCGACCTCACCTACATCACTGAGCGTATCATCTCCGTCTTCTTTCCCCCTCTGCTGGAAGAGCAGCGTTATCGCCTCAATCTCAAAGAGGTGGCAGCTATGCTCAAGTCCAAACACCAGGACAAGTTTTTGTTACTAAACCTGTCTGAGAGAAGGCATGACATCACACGGCTTAACCCTAAGgTCCATGATTTCGGCTGGCCGGACCTACATGCACCCCCACTGGACAAAATCTGTTCCATGTGCAAAGCCATGGAAACATGGCTGAACTCTGACCCCCAGCATGTGGTGGTCCTGCATTGCAAGGGGAATAAAGGAAAGACAGGAGTTATCATTGCTGCATACATGCACTATAGCAAGATATCAGCAGGGGCAGATCAGGCTCTCAGCACACTGGCTATGAGGAAATTTTGTGAGGACAAAGTGTCATCTTCTCTCCAGCCTTCACAGAACAGgtatatatattattttggtGGACTTCTATCAGGGGCCATAAAGATGAATAGCAGTCCTCTTTTCCTCCATCAGGTCCTTATTCCCACCATCCCCAAGTTTCATGCTGATGGAGGGTACTTGCCCTTCCTGAAGATCTATCAGTCCATGCAGCTGGTTTACACCTCGGGCATATATGATTTGCAGGGTTCAACAGGCAGAAAGCTGTGTGTGACCATTGAGCCTGCTCTGTTGCTGAAAGGAGACATTATGGTGAAGTGCTATCACAGACGACTTCAGGCCACTGAGAGGGACACGGTGTTCAGACTCCAGTTTCACACCTGCACCATCCATGGAGCACAGCTCTGGTTTGGGAAAGGAGAACTTGATGAAGCTTGCTCAGATGATAGATTTCCCCCTGATGCCACTGTGGAGTTTGTCTTTTCCTCTGGACCAGAGAAAATTAAAGGACGAGAATACCAGCGGAACGATCCAGCAGTCACAGTTGACTATAATACAGCTGATCAAGTGGTGCGCTGGGATTCTTACGACAACTTGAACCAGAGACATGAAGACAGTCAAGACGATATTGCACACACTCGAGGGCCTCTGGATGGCAGTCTATACGCTCAGGTGAAGAAGCGGCGTGCTGCTTGCTCTTCCCCCTTTACATCCACCAATGGTAGTCCAGGGCAAATCTCTGATGAGAGACAAGGTCATCTCCTGTCACTCAGCACCGACTCAGGGCATTCATCAGCTCCACCTGAACGCCTTGAAGATTCACCCAGACGGCCACCACCAACTCAGCAAGAACGGGAGGAGCTGGAGCGGCTTCTTGGAGGAATTGAGGGTGAGAGGACTAGCAGAGATCGTGAACGGGAGACAGCTATTTTGGATGATGGCGACTCACTCCCACCAGAAAATACTGGGTCGCTGCGTTTGGCTCGTTCATGTTCCTGCCGCATGGGCTACAGGTCACAGCGTTGCTCTGAACTCCATCACTTGCCCAATGGGTACTGCTTGGACCACTCAGCTCCCAGCAACAATCACACAGGAGTACCTTCACCAAACATGCTAGGGCTGTGTCAGCACCACAGCAGTCACACACACCAGTCGCTCCCACCTCCAGACCTGCTGTGGGACCGACAGCAAGGCACTCAGCACTACCTGCATGGTCCTTCTAGGCATGTTTGCCCTTATCCATCCCAGGATCTCTGCCCTCACCCTCACACACTTTCCCCTAGTGGACGACTGCTGTGCAGGTCAGACGAATTCCTCCCCTACACCCAGCCACAACACAACCACCCACACCACCCGAAAGCAGCTGGACCCTACCATGATGTAATGCTTGTAGACGGCCTCCTACCACCCCCTAGCTGCCCATGCCGGGATTGTTGCTTGAGGCGAGAGGACTTTCACACTTTACGGCTTGACAGAGGTGAAGGATTGCACTGGGAAAGGGAAGAGCTCCCTCGAGATGGTGGCTTACGGCGAAGCAGAGGATCCGAGGTTCCAAGACGGACAGAACTGCACTGGGAGCGAGAGGCAGGATTAAGACAAGGTCGAGAGGTCTCACTCCATtgggacagggacagagaggCAGAGCTACAATGGGAGAGAGAACGAGAAGCTGAGTACTGGCACCGAAGAACTGCTTTGTCACCATATGGCCCCCCAGCTCACGAGCCTGCCTTCTCCTTTGACCCACTGCCGCAGGGTCACCCAGCATTTCCCGAACCCTCAAGATCACACAGTCATCCCCACCTGGATATAAAGTACAGCAGTGGCTCGAGCAGCTACCAGACATCTCACCAGATGTGCCCCTGCTCACCCTACCAGCCGTCGCCTTCTGAGAGCCGTGGCTACGCTTCAGGTTACCAATCAGACTCCACTTCTCCACTGCCTCCCAGCTACTCCTCTTGCTACAGCCATACAGACCCCCACCAGCATCACTAtacctccaacacacactcagACGGTTCTGGAGTTCCAGGTGAGAATGTAGGATGGCGGGACCATATTACCCATGGTTCCTTGAGACGGCTAAATCGTGAAGCACATGGACCATGCTCCACCCCCTCTGATATGTCTGGACCACCCACTCCAGTCCACACCAGCAGCCCACTGCATACACAAGAGAGCCCCAGTCTGAGTGTTCGGGATCAGGAAGCACGATCATCAGAGATGAGCACAGATAGCACCACGCACCAGGAGAGAATGAACCCATCTCTCCAGCAAAATCTCACAAATTCTGGGCCAGCGCCCCATCAAGTTGGAAGTCCATCCACAGAGCCTCCTAAGTCATGCACATCTATCCCAGAGAAACACTGCATCCTTCCTCATCAGCTCTCTACACATTCCCCTTCTCCTCAGCAACTCCCATTACattcttccttttctcctcAGCAGGTCTCTACACATTCCTTGTCTTCTTCTCAGCAGCTCTCCCCACATTCCTCTTCTCCTCAGCAGCTCTCCCTACATTCCTCTTCTCCTCAGCAGCTCTCACCACATTCCCCTTCTCCTCAGCAGCTCTCCCCACATTCCCCTTCTACTCAGCAGCTCTCCCCACATTCCTCGTCTCCTCAGCAGCTCTCCCCACATTCCTCATCTCCTCAGCAACTCACCTCACATTTCTCGTCTCCTCAGCAGCCCTCACCACATTCCTCATCTCCTCAGCAGCTCTCACCAcattcctcctctcctcttcatcAGAACTCTATACACTGCTCCCCTCCTAatcaaaactccacacactgcCCACTTCCTCAACAGAACTCCACACACTGTCTCCCTCTGCAGCAGGACTCCACACACTGCCCACCTCCTCAACAGAGTTCCACACATTACCCACCTCCTCAGCAGAACTCCACACACTGCCCATCTCCTCAACAGAACTCCACACACTGCCCATCTCCTCAAGAGAGCGCCGCACACTGCCCCCCTCCTCAACAGAGCTCCACTTCTCAGCAGAACTCCACGCATTCTGCCCCTGTAATACCCACAGCCAACACTAACCCACAAGCCTCAGTGCCATCTACCCATTCTGCCCCAGCATCTCCTACTAAGGCAAACGAACAACAGAGCACCAGCCAGCCAATCAAGGAAGCTAGTCTGCCCCTCTCAGCGTCTCTGCCAATTAAAAATGAGACAGTTCTACCCTCTGTTTCCCCTCATTCTTTGCAGCACATTCACCAAATCCAAATATCGGAGTCTGTTCCAGTGCAGCCTCACAGCAATGGAGTGCCATCAATTTCTGATCCAGAGACTCCCAATTTATCTCCTTCTGCTCCTGTTTCACCTCAACCACCACTGAGCAGCCTGAATGGCTCTTCCTCCCCGGAACCCCCTGTTCCAGGCTTTGCCACTCTGGGCAGGAAGCTGATGTTGGACACAGGATCCACCCCATCTGGAGATCCTGATACTAGTTGCAGTGCCTCGGATGCTTACTCGACTTCCACCATTGCCCTCTCTTCAACCACTTACCCACCTTCTGACAGCACTGCCACCCAGCCTCCTTTGCCAGAGAAAAGACGCCAGGGTACCCTGCCAGGCTCACCCAATGCGAGGTCAGGCACCCTAAGAGCATCCACAAGTCATTCCCCCTCTGGCCAACACCATGTTACCTTCTCACCATTGGTAGGAGCGGTGACAGTACCTGGTGGGCAGAACGACGGGCTGGCAGAGGGTGAAACAGGCAGCAGGGTCAGTGTGAAGTTTGTGCAGGACAGCTCCCGTTtctggtacaagcctggaatcTCCCGAGAACAAGCCATTGCAGCTCTGAAGGAAAAGGAGCCGGGTGCATTCCTCATCAGGGATAGTAACTCCTTCCAGGGGGCCTATGGTTTGGCCCTCAAAGTGGCCTCACCACCTGCCAACATCAGCAACCATTCAAGCAAAGTTGGAGATCCTATGGAGCAGCTGGTGCGACATTTCCTAATTGAGACTGGACCACGAGGGGTGAAAATTAAAGGCTGTCAAAATGAACCCCACTTTGGGAGTCTATCAGCACTGGTGTATCAGCATTCCATTACACCTATCTCTCTGCCCTGTGCTCTCCGCATCCCTGACAAGGaTCCCATAACAGAGAGCCAAGAAGTGCAGCCTGTCAGCAACATGAGCACAGCAGCAGACTTACTGAAACAGGGAGCAGcATGTAATGTGCTGTACCTGAACTCGGTGGAGACTGAGTCTCTGACAGGACCGCAGGCAGTAGCTAAAGCGACAGgcgtgatgatgtcactaagCCCTCGGCCCTTGGCCACCGTAGTGCACTTCAAAGTGTCGACACAGGGCATCACTCTGACCGACAGTCAGCGCCGGGTGTTCTTCAGGAGGCACTACCCCATTAACAGTGTGACTTTTAGCAGCGTAGATCCACAGGACAGGAGGTGGACTAACTCAGACAGCACAACATCTAAAGTGTTTGGGTTTGTAGCTAAGAAGCCAGGCAGCGTGGCAGAGAACGTGTGTCACCTGTTTGCCGAGCTCGACCCGGAGCAGCCTGCCATTGCTATCGTTAACTTCATCAACAAAGTCATGCTGGGGCCACAGCAGCGCtagaggaagagggagaaagagaagaacaTCAATCCCTCACAGACAAAAAAGATAGTGTGGCTCATGGTTAAAAAGCGTTACCAAAGCACCGTCTAGCCTAGTCTGCCATGTTGATGAAGTGCTTCAAGACCAAATCAGAGTTAAATGAACTAAACAGTGATACTGATatcaaaatactgaaatattgaaagtttaataacacattattaGAAGTCACAATCATTGAGGTAGGAATATATTGAGCACTGTTGATTTCTTTTATACAGTATGAAAAGTATCTTATAATAAGACAGTACATGCACTCAGAAATACCAAATAACTCCACAGCTGACAATCATCAGTCTTTCTTTATGTATTTCCTTAACCAGCTTTAAGTAGTTAAATAGAGACTAGCTGCTATGGGTGTCTAATCTGGCACCCGGTATAAGAGAGTACAGCAGAATGTTTGAGAGAGTCCGAGTTTTCTGGGAAAGGTGGCGTGAGGAAAAGTGGGTCGGGCTTGTAGACAGGTGTGTGATGAGCAGGCATACAGTGGTGGTACCAGGGAAGAAATGAGGTTAACTATAGTGTAAATAGGTTCATCTGGAGTCAAACGgttgtgtatttttcttcatttagaAACGAAGTTAAACAGACTAAAGAATTTATCACAATAAGCTTTCAGCTTCCGTTGCAGTACTCAACATGGGTCATTTTATCGCACCATTATCAGCCTGCGAAGATAGACGAGCAGCGTAAGGTTTTTTTTACTCTGCcctaaaaattttaatttcaaaatttatattaatgtatttcattttcatgtcatAACCATGTTAATGTAAAAAGGAGGTCTAAAGTTTTACTTAACTAAAAAGCTTTGCTGAGCACTCATATTTATAAGCTTTATTCagtcatgtttaaaatgtcatgtATTTTGTTTGCATGGATCAGAGTCATTATGGCTTTCTAAGAAACAGACATGTCCGACAGCTTTAATATATTGTACTCTGTATTTTCTTGTTGATCTTTGTATTTAGTAATATATTCACTCAGATGCAGCTCAgaaagtgattttaaaaatacttaatgGAAGGacacttttatattaaatggatttttaaactGCTATTTTTTCAATATAAgcataaatgaatataataaatgtaaagctGTGGTACCAAGTA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301888 lncRNA downstream 41304 14530825 ~ 14532588 (-) True G255020
TU301364 lncRNA downstream 873487 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 877272 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 908419 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 959229 13614428 ~ 13614663 (-) True G254587
TU301946 lncRNA upstream 92059 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 92059 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 267479 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 572221 15180386 ~ 15180640 (-) True G255403
TU302303 lncRNA upstream 573992 15182157 ~ 15185972 (-) True G255385
XM_026921044.2 mRNA downstream 89785 14475675 ~ 14484107 (-) True ppp4r2a
XM_034312057.1 mRNA downstream 251590 14278094 ~ 14322302 (-) False chl1a
XM_026920791.2 mRNA upstream 15896 14624061 ~ 14646305 (-) True eif4ba
XM_026920792.2 mRNA upstream 15896 14624061 ~ 14646245 (-) False eif4ba
XM_026920793.2 mRNA upstream 16788 14624953 ~ 14646245 (-) False eif4ba
XM_026920738.2 mRNA upstream 61651 14669816 ~ 14673966 (-) True LOC113530599
XM_026920809.2 mRNA upstream 133004 14741169 ~ 14748595 (-) False zgc:171775
XR_004579685.1 other downstream 423311 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other downstream 423311 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other downstream 423311 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other downstream 427061 14129216 ~ 14146831 (-) False LOC113530423
TU300417 other downstream 2414532 12158772 ~ 12159360 (-) False ptk6b
TU301948 other upstream 91107 14699272 ~ 14704270 (-) False G255071
XR_003403204.1 other upstream 879592 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 1106870 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 2039658 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 2205219 16813384 ~ 16831259 (-) False si:ch211-210c8.6

Expression Profile