RNA id: XM_034312143.1


Basic Information

Item Value
RNA id XM_034312143.1
length 3739
RNA type mRNA
GC content 0.44
exon number 11
gene id si:rp71-17i16.5
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10638766 ~ 10651923 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGTTGTCCAGTAGGTGGCGGTCTGCACATTCAATTCGTGATCATCCGCCataaatttatagaaaaaagaaaataaaaacttataaATTAACTTATTTATGATTTTCAGGTATAAAGAATGAGGAAGTAAAAACCCACACTGCAAACATTCCAATTATACTGAACTCTTACTGTAAGGGAAATGATATGCACACACGCTAGAGACGGACTGACAAAATCTCAGGAGGTATGGCGATGAAATTGGAGAAATGGCAGCAAAGAGTATCCACATCTAAAATAACTTCTGAACATCTGCACTGCGCTGAGCACAGCCTGTTGTTTATGTGCGAGTTACCCACCAAGGAGGGACCTCAGGTTGCAAGGGAACAAGAAGCTGTAGAAGTGAAACTCCCAGCCCAGTGCACTGTAGAGCAGCTTCGCCTGGTGCTTTGCATGCGTGTACAGGAGACCAGGAAGTTCCAAGATCCATTTGGGCTTCTCGATCCTGAAAAGTATAGCCTATTGTACACAAAGGGGGAAGatcaatatgaaatttatgATGACTGTCAGGTGCTGAAAACGCTGGATGCACCCTGGTTTCAAAACAATGAGGGATACCAAACAGTCCAGATTACAGTATTGGCAAAGCAGGATAACCCGGAGGAGAGGATGGAATACCAGCAGATTCTAAATGAACTAATCGGTTACGATTTTGACTGTGCAGCAGGTAATCGTTTAAGTGAGCTGAGTTTCACCCGCAGAAAGTTTGCCACACCACGTAAGGAAGAATTAAAAAAACGGGATCCTCTGGCTTATGCTACAGAGCCCTGGACAACTTCTGCACCAATTCCAAAAGACCAGCAAGATCAACTCAAACGCAAGCTACCAGTAACTGTAAATTACAATGATATAAGTATACATGTTAAAGCTGATTTGTTTAATACTCCTAGTGACCTCCTTATGGTTCTTTGGGAATCAATGCTTTCAAAAGACCAGTGTTTTTTGAAATGGTCAGCTAATCATGTTCTCAAAGTCTGTGGCAGGGAGGAGTTCCTGTGTGGAGATTTCCAACTTTCAGACTTTCTCTGGGTTCGACACTGCCTGAAAAATGTGAAGGAGCTTCACCTCAATGTGGTTGCCATAGCCTCACTTCCAGATGATGCAGTAAGAAAGGAATACTGGCCCCAGGTTGACAGTCTTACAGGTCTCTCTAGTTCCCATGAAGAAATCTCATTTGCGGggaaagaaatggaagaaattGTAATGATATCCCTTTGGGATTGTGAGAGGAACTTAAGGGTAAAGCTCCTTGGGATTGATATTCCTGAGTTGCCAAGCAAAATCCCTCAACATATTTATGTAGAGGCTTCAATTATTTATGGCAGTAAGGTGGTATCATCAGTTTGTTCCTTGTCAAAAGAATTTGCAGAAGAGGTCTTGTGGAACACTTGGCTGGAGTTTGATATCCCTCTGAAAGATATCCCTCGTGGAGCTAAACTAGGCTTCACAATTAATGCCAGCAGCATGGATACAGCCCCCACTAGAGAATCTAAGTCCTCTTACCCCGGATACAAAGTTCCAGATTACCAGAAAGGAAAAGGGAAagtattatattttgtaaacCTTCAGCTGATTGATCACAGATCTCTTCTAAGCCAAGGGTCCCATACGTTGCACATGTGGTCCTTCCcagaacaggaagaagaagCATTCACCTATGAGGCAGACAAACTCTCTACTGCCACCAACCCTGATGTGGCCAAATCCATGGCAATCACATTTCTACTGGATCGCTACAGCTTCTCTGTTGTGCTACCCCATAGCAGGGTGTCATCTGAAATCATGCCTTCTACTGTAATCTCTACTTCAACTAATCCCAGCTCACCTCTTCATGTGACTGGATCCGGCCAATCCTTGCCAGGTCATATGTCTTTACAAGCAAACTCTTTAGACAAACACTGCCTGAAAAGGTTCAGGGAAGTGAGTGTTCGTTATGCTTCAAACCTTCCTCAGTTTCTCCGCACAGTAGATTGGTTGGATCCCAGTGCTGTCCAGGATGTTCACTGGCTACTGAGTCACTGGGAGCCTGATGACTTGGAACTGCCTGTTGCTTTGGAGCTGCTTAGTGTTGATTACACAGATGAGAAGGTTCGAAGGTTGGCTGTCCAAAGATTGGAGATGATGTCCAATGAGGAGGTACTAAGATACCTACTGCAACTAGTACAGACCCTCAAGGTAGAACCATACCATGACAGCTATCTGGCAAGATTCCTAATTCAGAGGGCACTCAGGAGCAAGCGAGTTGGACACTTCTTCTTCTGGTACTTGCGGAGTGAGGTGGCAGGTTGCCCATTTTTCCGCCAGCGTATGGCAGTCATATTGGAAGCGTACCTCCTGGGCTGTGGTGAGGCTATGCTGACGAGTTTACAGCATCAAGTTCAAGTTGTCAAGATCCTGCATGAAGTGGCTATCAGGGTGAAGACACTGTATCCAGAAAAAAGCACTCTTTCAACTTTAGGTAACAAGCAAACAATTTCTTTCaaaattcataataaaatgaatgaatgtaattcttattgctgtctctctgtatcaGCTGCTCAGAAACTTCAAGAAATACTGCAGGAGTATAGTTTCCCTCCTGAATTCCAGGTGCCTTTTGATCCAAGGGTCAGGGCAGGTGCAATCCTTCTGAAGGAATGTAAAGTGATGGCTTCCAAAAAGAAGCCCCTCTGGCTTGAGTTCTCCCATGTGGAGTCAGAGGCAGCAGCTGGTTGTCCAGTGGGTATCATCTTTAAGCAAGGCGATGACCTTAGACAGGACATGCTCATCATTCAGACACTGATGGTGATGGACTCAATTTGGCAGGAAAACTGCTTGGATCTCAACCTGATGCCCTATGGCTGTATATCAACAGGATATCAAATAGGTATGATTGAGATTGTGAGAGATGCTGTTACAATCGCTGCTATTCAGAGGATTCAAGGTGGGACAACAGGAGCATTCAAAAATAATGCCCTGTTTGAGTGGCTCAAGGGAATGTGTCCCCTACAGGAGAAGCACTATCAGGCAATGGAGAAGTTTGTCACTTCGTGTGCTGGCTACTGTGTGGCCACGTATGTGTTGGGCATTGGTGATCGGCACAATGACAATATAATGATAACAAACCAAGGGAATCTGTTCCACATTGATTTCGGGCACATCCTGGGCAACACCAAGAGCTTCTTGGGTGTGAGCAGAGAAAGGGTCCCCTTTGTCCTCACTCCCGACTTTCTGTATGTTATGGGTAGAGTGAATAAACATTCAAGCCTCTACTTCCAGAGATTTAAGGACACTTGTATACAGGCCTACTTGTCTCTGCGCAACCAGTCCCGCCTGCTGGTCACCCTCTTCTCCCTCATGCTGCTGACAGGAATCCCCGAGCTCAGCACGGCACAGGATATGCGCTACCTGCGTAATGCACTACAGGAAGACCAGAATGAGGAAGAGGCACGGCAGCACTTCCTGCAGCAGATTGCTTTATGTGAGCAAAAGGGCTGGACTGTCCAAGCTAACTGGTGGATCCACTTGATGGCTGGCATCAAGTAAACTGAAGGAGCAACTGAtgtctgatgtgttttttttttccttttggatTGCATAgtacttttgtgtgtttggtttgtGGCTTGTGTTGTTTAATGTGGCTAAGAAGCATCATGCCAAAATGACTTGATAAATAGTGAAACTAAACTAATGAATAAACTGGTGTTTACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299090 lncRNA upstream 5347 10620649 ~ 10633419 (+) False G252665
TU299148 lncRNA upstream 9962 10624852 ~ 10628804 (+) True LOC117599292
XR_004579750.1 lncRNA upstream 12142 10624855 ~ 10626624 (+) False LOC117599292
TU299087 lncRNA upstream 14857 10620649 ~ 10623909 (+) True G252665
TU299104 lncRNA upstream 97287 10541270 ~ 10541479 (+) True G252675
TU299154 lncRNA downstream 3884 10655807 ~ 10656025 (+) True G252720
TU299172 lncRNA downstream 113203 10765126 ~ 10766107 (+) True G252732
TU299171 lncRNA downstream 126617 10778540 ~ 10779404 (+) False si:dkey-32e6.3
TU299371 lncRNA downstream 293157 10945080 ~ 10946913 (+) True G252893
TU299383 lncRNA downstream 297746 10949669 ~ 10953182 (+) False G252903
XM_026920649.2 mRNA upstream 19952 10617926 ~ 10618814 (+) True taf13
XM_026920650.2 mRNA upstream 19952 10617937 ~ 10618814 (+) False taf13
XM_026920651.2 mRNA upstream 19952 10617939 ~ 10618814 (+) False taf13
XM_034311760.1 mRNA upstream 201109 10422931 ~ 10437657 (+) False znf362b
XM_026921265.2 mRNA upstream 201109 10422932 ~ 10437657 (+) True znf362b
XM_034312151.1 mRNA downstream 7245 10659168 ~ 10663619 (+) False si:rp71-17i16.6
XM_034312150.1 mRNA downstream 7247 10659170 ~ 10663619 (+) True si:rp71-17i16.6
XM_026921052.2 mRNA downstream 13105 10665028 ~ 10710143 (+) True lamb2l
XM_034312141.1 mRNA downstream 60840 10712763 ~ 10744388 (+) True lamb2
XM_026921058.2 mRNA downstream 60840 10712763 ~ 10744388 (+) False lamb2
XR_004579736.1 other upstream 299561 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2012904 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 2280666 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 2301267 8312773 ~ 8337499 (+) False atp13a2
TU299368 other downstream 196928 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 220106 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 344686 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 579506 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 607924 11259847 ~ 11259918 (+) True trnah-gug_14

Expression Profile