RNA id: XM_026921068.2


Basic Information

Item Value
RNA id XM_026921068.2
length 2249
RNA type mRNA
GC content 0.46
exon number 9
gene id bgnb
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10824171 ~ 10841193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGGGAGAGGTTGCTCTAAGTTTTGGGCTGAACTTTCTCCAGATGCAGCTCCTCCGTTATTTCCTAAGTTTGTGAAGGACTTTCAGTCGTCCATTCTGCTGCAGAATACAGACCTGACACCCCGAAAAAACGGAGACAGCTCCTTTTCCTTGGGTGatagcaaaatattaaaatactacTAATTCTTATGTAACAGAATTTCGACTATTCGAAGTGACAGGGATAGTTGACGCTGAGAGAGAATCTGAGGATATTGCTGTTTAACCAAAGGCCCTACTCACAGTCAAAGCCCTAGCTGGTTCACCACTGGGAAGAGGGAAGGTAACCAGAAGTACCATCCCCCTCCAGATGTCCACAGGTCTGAGCATATGTGTTTGTGCTCTGTCAGAATCTCAGTGATGTTCTCCTACTTCtctctcctgctgctgctgagtgTGTTCAGCTTGGCCTCCGTCTCACTGGCGCTGCCCTTTGAGCAGAGGGGCTTCTGGGACTTTGGCATCGATGGCGATGGGGGTGGTCTGACGGTAATGATGAGAGATGAAGAGGATGGCTCAGCTGTGCTGCCCACAGAGCTGCCGCCTTTTGAGGTTCCTTTGTGTCCATTTGGGTGCCAGTGTCAGCTAAAAGTGGTGCAGTGTTCTGACCTAggtTTGACCTCAGTCCCTCAAAACATCCCCACCGACACCAAGCTTCTAGACCTGCAGAACAACCGCATTACAGAGCTGAAGGAGAATGACTTCAAAGGCCTCAGTAATCTCTATGCTTTGTCACTGGTCAACAATCAGATCTCTAAAGTTCATCTGAGGGCCTTCACACCGCTAAAGCACCTAcagaaactttatttttccagGAACCTGCTGACAGCAGTACCCAAAAACCTACCACCCTCACTGGTGGAGCTGCGCATCCACGACAACCGTATTAAGAAGGTGCCTGCGGGCTCCTTTTCTGGCCTCGGCAGCATGAACTGCATAGAGATGGGTGGGAACCCCATTCAGAACGGTGGCTTTGAGCCCGGAGCTTTCAAAGGTCTCAAACTCAACTACCTGCGCATCTCAGAAGCCAAGCTTACTGGTGTGCCTAAAGATCTCCCTGAGAGCCTCCATGAGCTCCATTTGGACCAAAACCAGATCCAAGCAATTGAGCTGGAGGACCTGAGGCGCTACAAGCAACTGTATAGACTGGGCCTGGGTTATAACAACATTCGCAATATTGAGAGCGGCAGCCTGTCCTATTTGCCAAACCTGAGAGAACTGCATTTAGAAAACAACCTGCTGACCCATGTTCCCAAGGGCCTAGCTGACATGAAGTATCTGCAGGTGGTGTACCTCCATTCCAACAACATAACCCGGGTAAGCGTGGATGACTTCTGCCCTGGAAGCTATAACATGAAGAAGAGCTTCTACAATGGCATTAGTCTTTATGGAAATCCCGTCCAGTACTGGGAAGTTCAGCCTGCAACTTTCCGCTGTGTCAGTGACCGCCTGGCCATTCATTTTGGAAACTACAAGAAATAAATGCACccagaggcagagagaagaaagaaggagTGATGGATATTGaacaatatcaaaataaaactgaagagaggaaagaaaatcaGAAGACTGGGGAGGGGGATAAAATATACAGTGGGTTTAGATTAGAGTCGTCTTGATGTAGAAGGAGCTTAAAAGCGGTTTAATAAGGAATGGGGGCTTGTCACGTTTCAAATGTACAGCCTGAGAGCACAGTCTGGCTACATGCCGGGATATATTCACTGAGCTGACATACAAAAAGCACCATTCAGTTTTTATAATAACTGTTATTGTTCACCAGATCTGTTTAGTAGTAATtcatatgtattattattattattattatttgaacagagaaattaaatatagattttaatGTTAAGGTGCCCTTTATGTGTAGATCTGCCTATATGAGTGTCTTTACTGAGTCACTGTCTTGCTTCTTGTGCTTTTGGCATCTCTTCCTGAGGGGCTGTAGtaaatgtatactgtatgtgatagGAAACTACTTGTCCTATActttaaaatgcagtttgtcagaCCCCCAGGCCCCATATGTCCATTCAGTGTCTTTACTGAGCCTGGAGCTGATCTATTCTAATGTACTGTTTTGCACATTGCCTCTTCATATTCTAGATGGAAGCTCTGGATGGGTTGAGCCTGTCCCTGCTTGTACTCTGCTCATCTGCTGCATTttgagaataaaataatattctttatGACTTGA

Function

GO: NA

KEGG:

id description
K08118 BGN; biglycan

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299171 lncRNA upstream 44767 10778540 ~ 10779404 (+) False si:dkey-32e6.3
TU299172 lncRNA upstream 58064 10765126 ~ 10766107 (+) True G252732
TU299154 lncRNA upstream 168146 10655807 ~ 10656025 (+) True G252720
TU299148 lncRNA upstream 195367 10624852 ~ 10628804 (+) True LOC117599292
TU299371 lncRNA downstream 103887 10945080 ~ 10946913 (+) True G252893
TU299383 lncRNA downstream 108476 10949669 ~ 10953182 (+) False G252903
TU299384 lncRNA downstream 108476 10949669 ~ 10961642 (+) True G252903
TU299445 lncRNA downstream 156888 10998081 ~ 10999820 (+) True G252955
TU299459 lncRNA downstream 197025 11038218 ~ 11039431 (+) True G252966
XM_026921074.2 mRNA upstream 8137 10802060 ~ 10816034 (+) True si:dkey-32e6.6
XM_034312147.1 mRNA upstream 8137 10802061 ~ 10816034 (+) False si:dkey-32e6.6
XM_034312146.1 mRNA upstream 28561 10786494 ~ 10795610 (+) True tktb
XM_026921070.2 mRNA upstream 39213 10780232 ~ 10784958 (+) True lrrc23
XM_026921069.2 mRNA upstream 44311 10772671 ~ 10779860 (+) True si:dkey-32e6.3
XM_034311975.1 mRNA downstream 2418 10843611 ~ 10852528 (+) False b4galt3
XM_034311976.1 mRNA downstream 2418 10843611 ~ 10852528 (+) False b4galt3
XM_026920885.2 mRNA downstream 2418 10843611 ~ 10852528 (+) False b4galt3
XM_026920884.2 mRNA downstream 2418 10843611 ~ 10852528 (+) True b4galt3
XM_026920878.2 mRNA downstream 2418 10843611 ~ 10852528 (+) False b4galt3
XR_004579736.1 other upstream 484966 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2198309 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 2466071 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 2486672 8312773 ~ 8337499 (+) False atp13a2
TU299368 other downstream 7658 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 30836 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 155416 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 390236 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 418654 11259847 ~ 11259918 (+) True trnah-gug_14

Expression Profile