RNA id: XM_026921081.2


Basic Information

Item Value
RNA id XM_026921081.2
length 1488
RNA type mRNA
GC content 0.52
exon number 4
gene id sac3d1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14050444 ~ 14054172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agataatatGGCACTTTTCTTATAGCTAATGATGGGACTGGTTTATAAGAGCAGGCGTGTTGATTGGTGTCAATCGGCTCCAGTGCAGGTACATAAATTTGTGCAACCATATCAGTGCCCTTTCCGTGTCTCCGCTGTGCTGAGAATAACTCCCCAGTCGAATTATACCTGCTGGTGTGGTCTTCTATTCACTGACGAACAGAGAATCTGCATACAGTCAGTAGTTGTACACTAGCAGAAGTACATCTgattaaagagacagagaatgcAGtgGACACATCTGACACAGTTGAAACAAAAACTGCAACTTGCTCCATGCACAGGAAGCCACGCTGTGAGAGGAGGAGGGCTCAGGAGCGATATGGGGCAGAAGCAAAGCCAGAAGAGTTAGTTCCCCATGGTACCTGTACCACTATGTGTCCCATCTCAGAGGTCCGGCGGCGGGAAGCACAGAGGCAGTTGCACTGCTTCGAGCTGGTTCCTGGGACAGAGAAAGAGCGCATGCCCCGTGCTGATCTCTCCCGCACGGTTAAAGAGTACTCGCGTCCTGCAGCTGGTAAAGATAGCACCAGAGCCTGTGACCTGAGACCTCCGGACGTGCTGTTCAAGACAGTGTGTTATCTGGTGGATGAGATAGCGGCCGCCTCCCCTACACTTCAGCCCTGGACTGAGGCCTACAGCTTTGTGTTTGACCGTTTGCGCAGTGTGAGGCAGGACATGGTCATCCAGCGCGTGTCTGGCTGGGAGTGTGTGGCAGTGCTTGAGAGAACAGTGCGCTTCCACCTCTATGCATCATACCGGCTATGTGGTGAGCCTCTGCGGCTCTACGACCCACACatcaacaacacacacctgcaggAGTGTCTGAGCTGGCTGTTGGAATGCTACAGCGAGGGACAGCATGAGCATCAGGCAGAATTCCAGGCTCTCAGCCTGCTCTACAACCTGGgtTCCACATGGACATTGCAGGGTGCCCTCGAGCTGCCCGAGAGGGTGCGTCTCTCTCCTCAGGTTCAGTTGGCTCTGGCAGTTAATAGGGCTTATATGGAGCGCAACCCTGTGCGTCTCCTACGTCTGGCCCAGAAACTGGACTTCTTACAAGCCTGTGCCCTTCACCGACACCTCCTCTCCTGCAGGAGAGATTTGCTGCTGCTCTACTGCCATGGACACAACAGCCGCAACTGCCGCTTTCCCATCCAGAAGTTAGCAGACATTCTCTTCCTGGAGTGTTCACTAGCTGCTCAGCTTTGCCAGGCACATGGAATCCAAGTGAGCGGGGACTGTGTGGTCTTCTCTAAAGCCTCCTTTAGCGAGAGCCCATGTAAAGAGCTGCAGTGTGCACAAATGCACAAGCTAGTGGATGACAAGCAACAAGACCTTTCAGTTGGCAGCATCATTCATGGCATTGCCTGAACATGTGGTTTAAAAGGGTGGTTCAATCAAAggtacttccttttttttaaaaaatatcttacTGATATAAATGtg

Function

GO: NA

KEGG:

id description
K16734 SAC3D1, SHD1; SAC3 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301364 lncRNA downstream 350039 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 353824 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 384971 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 435781 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 459474 13590500 ~ 13590970 (-) True G254568
TU301888 lncRNA upstream 477052 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 646451 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 646451 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 821871 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 1126613 15180386 ~ 15180640 (-) True G255403
XM_026920724.2 mRNA downstream 2215 14042572 ~ 14048229 (-) True mrgbp
XM_026920723.2 mRNA downstream 7977 14035800 ~ 14042467 (-) True eef1a2
XM_034311846.1 mRNA downstream 102875 13819191 ~ 13947569 (-) False sulf2b
XM_034311844.1 mRNA downstream 102875 13819191 ~ 13947569 (-) False sulf2b
XM_026920635.2 mRNA downstream 182081 13814838 ~ 13868363 (-) False sulf2b
XM_026921076.2 mRNA upstream 1629 14055402 ~ 14060447 (-) True haus8
XM_026921077.2 mRNA upstream 1629 14055402 ~ 14060446 (-) False haus8
XM_026920383.2 mRNA upstream 18386 14072159 ~ 14086054 (-) True pigt
XM_034311647.1 mRNA upstream 75190 14128963 ~ 14150581 (-) False LOC113530423
XM_034311649.1 mRNA upstream 75993 14129766 ~ 14150581 (-) False LOC113530423
TU300417 other downstream 1891084 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1909271 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 2157442 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 2158024 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2481914 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 75443 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 75443 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 75443 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 75443 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 645499 14699272 ~ 14704270 (-) False G255071

Expression Profile