RNA id: XM_026921091.2


Basic Information

Item Value
RNA id XM_026921091.2
length 2070
RNA type mRNA
GC content 0.45
exon number 10
gene id ca6
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9411473 ~ 9417779 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCAGTCCGAGTGTGCCAAACACACACGTAGATGTGCAATGGAGCTGTTCACTGCGATCATACATGCTGTTTCACTGAGTTTTGTACTGGCTGGAGCTGGGGTACACTGGACATATAAAGAGGGATCTCTGGATCAGGCGCACTGGCCGGATGAGTATCCCGCATGCAGTGGCCGTAAACAGTCTCCCATCGACATCCAGCGGCGCAACGTGCGGTTCAACCCGCACATGCTGCAGCTCGAGATGACCGGATATGGCGAGGTGAAGAACGGCAACTTCCTCATGATCAACAACGGGCACTCGGTCCAAATTAACCTTCCGCCCACTATGGTGATAACGAAGGGGCTGCCAGACCGCTACACGGCTGTTCAAATGCACTTACACTGGGGTGGATGGGATCTGGAAGCCAGTGGCTCTGAACATACTGTGGATGGCATCCGTTATATGGCAGAACTTCATGTGGTCCACTACAACTCTGATAAGTACAAGAGCTTTAATGAGGCCAAGGATAAGCCTGATGGTCTGGCAGTGTTGGCCTTCTTTTATGAGGATGGGCATTTTGAGAACACATACTACAGCGACTTCATCAATAACCTGGCAAAAGTCAAATATGCAGGGCAGTCCATGAATATCTCTACTCTAAATGTACGTTCCATGCTCCCTGAGAACCTCGCCCATTTCTTCAGATATGAGGGCTCTCTCACGACGCCACCATGCTACGAGAGCATCCTGTGGACTGTGTTTGATACCCCCATCACCCTGTCCCATAACCAGATCAGGAAGCTGGAGAGCACACTTATGGACCTGGAAAATAAGACCCTGTGGAATGACTACCGCATGGCACAACCTCTCAATGACCGAGTGGTAGAGTCCTCATTCCTCCCTCGCCTGGGCAAAGGCATATTTTGTAGGCAAGAGGAGATTGAGGCAAAGCTTTTAAATATTGAAAGCATGATTACCTCTCTTGGAAAACATATACACTCAGATGGCGGTTATAGGCCTACCAACAAAGAGCCACAGGCAATATTCCCACTAGTGCTTAATTTCCCTACAAACAAGCTAGAGAGTTTTGCTCTGATGAACCTGGCTCACCCAATGAACCTGCATTCCTTTACGGTGTGCATGAACCTGCGTATGCACTTACGCCCTGTGCACACTGTGCTTTCCTACTCCACCTCCAAAAATGAAAACGAGCTCACGATCACCATGGGCTACGAGGTGGGGCTCTGGATTGGAAATGAGTTCGTCAACCTTCCCCATGAGCTGCGCCCCCGTGCCTGGGCACATTACTGTCTGACCTGGGCTTCACACACTGGAGGGGCTGAGCTCTGGGTGAACGGTGTTGCTGGTGAGGAGCAGTACCTGCGAGCAGGCTACACCATTCCTCCTGGTGGTGACCTCATCCTGGGAAAGGACCAGGATGGCTTCCTGGGAATCTCTGATTCGGATGCATTCGTGGGCTATATGACAGATGTGAATATATGGGATTATGTGCTGGGTCCTGAGGAAATCCAGGAAGAAATGAACTGTGAGAGAAACTCAGGGAAAGGCAACGTGCTGAATTGGGGTGTCACACGCATGAGTCTGTATGGAGGAGTCCAGCTGGAGACTGAACACAAGTGCTCCTGATTCAACACATTTAACTTCTTCTAAATAACATGAATAACATGATGTTGATTTTCTCTTCTCTGAAGCACTGACTGTTGATCATTATTCCTTTGGGTTTCAAGTATAATATCAGTTTTGTACTTAAAATTCTCTGCTATGTAAGACcacaaatataatatacatatacatatacatatacatatctaCAAGCATTCAATAAActttagaataataaaaaattatttgcatattttaatagaatatgtttttaaaataaagtaacaaacaagatatatattttttttccaacatgtaGTTAAAGTTTTCCAACTTGAAGTTAAACTTTATACACACAAGTAATAAGTAAACTCTAGGATATCTCAGCAGTTCTTTGGCtaatcttatattatattaaaaaaaaaaagagaaaatagtgCATTTTAGTCAGGATTTCTAAACCTA

Function

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579723.1 lncRNA upstream 3775 9406507 ~ 9407698 (+) True LOC117599255
TU298028 lncRNA upstream 5085 9403851 ~ 9406388 (+) True G251800
TU298026 lncRNA upstream 10081 9358262 ~ 9401392 (+) True G251799
TU298031 lncRNA upstream 162210 9243314 ~ 9249263 (+) True G251803
TU298029 lncRNA upstream 172940 9233213 ~ 9238533 (+) True G251801
TU298189 lncRNA downstream 20781 9438560 ~ 9438796 (+) True G251921
TU298258 lncRNA downstream 124350 9542129 ~ 9543640 (+) True G251988
TU298391 lncRNA downstream 237103 9654882 ~ 9656393 (+) True G252102
TU298408 lncRNA downstream 290316 9708095 ~ 9730055 (+) True G252116
XR_004579703.1 lncRNA downstream 526783 9944562 ~ 9946932 (+) True LOC117599238
XM_026921233.2 mRNA upstream 304250 9068705 ~ 9107223 (+) False noc2l
XM_034312117.1 mRNA upstream 304250 9068866 ~ 9107223 (+) True noc2l
XM_026920737.2 mRNA upstream 390328 9006742 ~ 9021145 (+) True perm1
XM_026920937.2 mRNA upstream 452278 8957394 ~ 8959195 (+) False her9
XM_026920936.2 mRNA upstream 452278 8957395 ~ 8959195 (+) True her9
XM_026921378.2 mRNA downstream 52293 9470072 ~ 9489862 (+) True spsb1
XM_026921022.2 mRNA downstream 261823 9679602 ~ 9728769 (+) True phc2a
XM_034312059.1 mRNA downstream 261828 9679607 ~ 9728769 (+) False phc2a
XM_026921023.2 mRNA downstream 261828 9679607 ~ 9728769 (+) False phc2a
XM_026921024.2 mRNA downstream 261828 9679607 ~ 9728769 (+) False phc2a
TU297603 other upstream 785611 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 1053373 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 1073974 8312773 ~ 8337499 (+) False atp13a2
XR_004579706.1 other upstream 1073974 8313817 ~ 8337499 (+) False atp13a2
TU297455 other upstream 1170706 8240018 ~ 8240767 (+) False si:ch211-197l9.2
XR_004579736.1 other downstream 874827 10292606 ~ 10339205 (+) False kcnab2b
TU299368 other downstream 1431072 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 1454250 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 1578830 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 1813650 11231429 ~ 11237362 (+) True oard1

Expression Profile