RNA id: XM_034312195.1


Basic Information

Item Value
RNA id XM_034312195.1
length 2377
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113530777
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20883692 ~ 20886509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGCACATCCGATTGCACCCTGTCAGCTCTACAACTGACCACAAAACCAAGCCCATACAGAGCTATAGACACAAAACAGgTGAGAACCACAGAGGTGAAAGAAAGTTTTCCACTAGTGTCTGAGTGAGACGGTTGACGAGACTGACGGAAAAAAGGCCCATGTCTGGAGATCGCGTTATCAAGgactgatttacacaaaaaCTCAAAAAGACGTGaaatcagaaaaaCTTCCAAAGATGAACACTTCCAACAACATCTCATGCGATGCCGAGTTGACTGCTGATTTCCAGTTCTACCTCTTCCCCATCACCTACATCCTCGTGATGGTGTTCGGTCTGCTGGGGAATCTGGGAGCCCTTTACATCTTCATCTTCAAAACAGAGCATAAGTCCCCCTCGAGCATTTACATCATCAGCCTCGCAGTGGCTGACACTATTTTCCTGTGTGTCCTTCCCTTCCGCATTCACTACCACCTCAATGGCAACAACTGGACCTTCGGGAATGTGGCGTGTCGTATGACGGGTACGGTCTTCTTCGCCAATGTCTACATCAGCATCGCCTTCATGAGCTGCATCTGCGTGGACCGCTACCTGGCCACCGCGCATCCCCACATGTACCTGCGTCTCCGTAACACACGCTGCGCTGGAGCCGTGTCCACCTTCATCTGGGTGTTTGGAGGGGCAGCAATTTTAGCCTTCATGTTCACGTCTCCAGATAGCCACACCACCAATGGGCGGACAAGCTGCTTCGAGAATTTTTCAGAGAGTGACTGGAAGACAAATCTGGTTCTGTACAGCGCCTTAAGCCTGGTATTTGGCGCCTTGTTTCCCTCAATCATCATCCTGGTGCTCTACCCGGTGGTGGCGCGTCGGATCGCGCAAATCAAGACGCGAACAGCGCGCGGTGCCCTGAGGATCATCTACACCATCCTGGCCATCACAGTCCTCTGCTTCTTGCCCTACCACCTAGTGTACTTGCTGCACCTGCTGCTGCGAACTCAGGTCATCCATAACTGCTTGCTAGCTGATGGTATCTACAAAGCAAGGCGTGTTACCATGGCGCTGGTCAGCATGAACAGCCTACTCGACCCTGTGCTTTATTACTTCGCCACCAGCCACTGCAAGTTGAACTGCAAATGGAACTTCAAGCGGCTGAAGCCAAGGAAGAAAAGAGACGTCTATGCCATCTCAGAGAGGTTACAAGCTCATTGAAGAAACAAACTCCATTTATCGAGATTTCTAAGAATAAACAATGACAAAGAAATGAACAGGAGAAGATGAGGGGCATCTATGTGACATAAAGCTTAGGAGTGCATTGGAAGGATTTTTTCTGGTGAAATATTCTACTGGGGTTACTGTTTTAAATGATAACCTAATCTTAATTgactataaaacacacacacacacacacacacacacacacacacacaagctggtgGTGAAAATTTAAGGAAAAATTAATTATGAAACCTCTCTTGTATatatagaacaaaaaaaaaagaaacaaaagatcAAATCCAGTGACTTTTCCATGAAATTTCATACACTGTCAGTAGTTATCATGTTGTTATACGctgaagagagagtgtgtgaaaggaaaggaaaaaattTAAACAGAGCGCACTGTGCGGCGCTGCTTAGCCAAAAATAGTTTTTTGGTTTAATGGTTTACGTCTGGTCAGCCATGTTGTGGTCTTCTGTGTTTGAGAGCCATCGCCATTGGGTATGCTACAGTTATAAACATGCTAGCAGCGGCAGCAGAGATAGCAAGGTGCTCTGGATGATTTCTGTCCAGGGGAAGGGTTGTGAAATCCAGCCGATGTTTCTGAGGCATTATAGCCAGACACAAATGGGATGAGAACCACTGGAGTTAAGAACTTGACTGGGTAAATGGCAAGAGATGGAAATGCATTTCAATCAGAAGTCAATCAGAAAAAGTCAGCGGTGAGGTAACCATCCAATCATACTGTGACGAACCACTGAAACTGTGACACTGTAACAACTCTATCtacaaccatgcaaatctcaccGAATGGTAGACAGGACTTCATTTAATGAGGGGTTTCAATTCCAAAACGGCAGCTGGACTGCAGGAAAGGAAAAGAGTTTATTCCTCAATGGAAACATTTATGCTAGTCAAAGAAAAGGAAACGTTATGCATGATAACAGAACTGAAaagatgttgttgtttttttagacAGAGGAATCCACCATGCAATCTTAAGATTTTAATTAGAAACATTTTATCTGATTTTAATTCCCAAGCACTGACGTtgtgtataaaatgaaatggtGGAATTCTTGTTTATCTAGAAACTTTGTTTGATCCAATCTTTGTgggtgtaaaataaaaatgtattgtatgcTGTGGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305900 lncRNA upstream 93547 20786242 ~ 20790145 (+) True G258362
TU305795 lncRNA upstream 127154 20682370 ~ 20756538 (+) False G258275
TU305794 lncRNA upstream 127154 20754692 ~ 20756538 (+) True G258275
XR_004579729.1 lncRNA upstream 171734 20708115 ~ 20711958 (+) True LOC117599266
XR_004579728.1 lncRNA upstream 184024 20696985 ~ 20699668 (+) True LOC117599265
TU305939 lncRNA downstream 16638 20903147 ~ 20907459 (+) False ubxn10
XR_004579744.1 lncRNA downstream 22307 20908816 ~ 20911082 (+) True LOC117599282
TU305997 lncRNA downstream 89389 20975898 ~ 20976359 (+) True G258439
TU306029 lncRNA downstream 198873 21085382 ~ 21088222 (+) True G258460
TU306047 lncRNA downstream 206820 21093329 ~ 21093844 (+) True G258476
XM_034311607.1 mRNA upstream 131821 20737744 ~ 20751871 (+) True march9
XM_026921277.2 mRNA upstream 153759 20719865 ~ 20729933 (+) True tspan31
XM_026920339.2 mRNA upstream 192078 20689186 ~ 20691614 (+) True LOC113530407
XM_026921045.2 mRNA upstream 196914 20684365 ~ 20686778 (+) True LOC113530755
XM_026921162.2 mRNA upstream 203622 20668113 ~ 20680070 (+) True pip4k2ca
XM_026920955.2 mRNA downstream 13613 20900122 ~ 20902771 (+) True cptp
XM_034312060.1 mRNA downstream 16596 20903105 ~ 20905396 (+) True ubxn10
XM_026921039.2 mRNA downstream 16598 20903107 ~ 20905396 (+) False ubxn10
XM_026920705.2 mRNA downstream 32579 20919088 ~ 20953971 (+) True vwa5b1
XM_034311675.1 mRNA downstream 37623 20924132 ~ 20953971 (+) False vwa5b1
XR_003403172.2 other upstream 369497 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 484978 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1404797 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1850704 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1971978 18879568 ~ 18911714 (+) False fmnl3
XR_004579743.1 other downstream 16596 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 16638 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 341811 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 651745 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1425297 22311806 ~ 22311888 (+) True trnal-uaa_2

Expression Profile