RNA id: XM_026921097.2


Basic Information

Item Value
RNA id XM_026921097.2
length 2064
RNA type mRNA
GC content 0.47
exon number 1
gene id fam43b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20997669 ~ 20999732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcagtctctcttcAGCGTGTGACAGAACAGCTTTCCTCACTCTTGCGCTCAGGCACTCAgtacacaacaaacacacactcgcttttTTGCCTTCGGAGGGGCATCAAGCCCCTCAGACAAATTGGGACCATGCTGCCCTGGAAAAGGAGCAAGTTTGTGCTGGTGGAGGATGATTCCAAGAGCAAAGCAAAGAGCCTGAGTGCTGGACTCACCTACCACTCACTGCTGTCCTCGCTGCTGAGGTCGTGCCCTGACCTAGTGCCTGAGTGCCCCTTCCACTGGCTCGCCGGGGTTTTCCACAGCAAGCGCCAGAAAGTGGAGCTAAACAAGGAGGAGCCCATATACAGCGTCCGCTACCTGGGAAGTGTAGTGACTGTAGTGGCGAAGGGTGAGGGCTGCACGCATGATGCTGTCGCCAAGATCTGGGCGTCCAGCAACTACGGTGAGCAGAGTGCCAAGATGAAGCTGAGTGTAGGGCCATACGGAATACGCATGGGTTGCCGCAGGAAACCCCCACACCTCTACACCCTTAACCGTATCACCTACTGCACAACAGACCCCTACCGGCCCAAGATCTTGGCCTGGATCTACCGGCACCAGGTCAAGCACAAGGCAGTGGTTCTGCGTTGCCATGCTGTACTTTTGGCCAAGGCGGACAAAGCTAATGCTATTGCTCTCAGCCTGTACCAGAACTCTATTTCAGCCTTCAGTGAGTTTAAGAGGCTCAAACGCCAGAGTGATTTCCGGCATCGCAAGCAGGAGCTGCTGGGAGAGGATATCATGCCACTCATGCCCCTACGGAAGCTGCTGAATGGACAGTGTCACTATCAGCCACCAGTAGACAGGCCTGGCAATTCCAACCGCCTGTTCTCCATCAccgaggaggatgaggaggaggaagaggaggtggAAGAGCAGGCAGACAATAAAGATGATAAAGCATCAAATACTGATCCACCAAATTCCGAGCCAGAGGAACCCCCTGAGAGAGAGCTGGGATACATAGTTCACGGACTAGACGGGTTTTCAATCACCATCAGAGACGAGGTGCACATGACTCTCAGCACACTTGTGTGACCGCACATGGATATTGGATGGTGTGcacttctttcttcctttgcccattctcctctttcctctctgtcCACTTCAGAAGAGCGCTCTCTCCTCAGAGCACACCGATTCCTGCAGAGCGTGATCTGGTCCACCATCAGCAAGTTTTAATGCTGAGTTGCTGCTGGCTCGCCTTGTGAGCACTTTCTATATGGgtgtctaataaagtggaactttgtgaataaacacaaaagCACAATGAGAGAGCGTCACACTGCAAAGCAAGCCAGGGAGGATGAACACTGAGGGAGCTCAGTCCTTGGGCTACAAACCAAACAAGGACAAAACAGAGACCTTCGATGAGCCTTTGTGTTCTTTTCATGTGATTGCATGAAAATACATACTTTTCTCAGATTTTACTGGATAATTTtggaaatatattatttgtgtaATATGGACATTTTTCTACGTACAGTAACCATCTCCCTCTTCTATGTATCTTTCCTTTCTGGCCAAAACCTCTGTGACAGCATTCAGCCTCTACACCAAGGCAGAAGCACTAATGAATTAATCCATGATTTAGGATATCAGCCATTGAATTGACGGGTTTACAGCTGCCACACATTACAGCCCCAGAATCATTTACCGTATGACCAGTGGAGACGCGTTTGCCATGGCATTTAAGGCAggatgttttaaatgtttgcagTTTTACCGTCCCTGGTTTGCACTGTGACATGTCTGGGACCAATATGaggaaaaatatgaatatagtCTATGCTTCTTTCTACATGATACACATTTCGATATCAGCTTGATCTGATAAAAAGGTAAATAAGCTTTACTGCTTTAAGAGGTAATGCATTGTTCAAAATCGTATGCCTATAAACACTGTCTCATATTCGTAGACATGTTTTTATCTAATAGTTGCTTTGTGATAATAATAGTGTACTAGACATTTCACAAGCTGTCATTCCAATTGCACTAATTAccataaaattataataaaa

Function

GO:

id name namespace
GO:0001944 vasculature development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305997 lncRNA upstream 21310 20975898 ~ 20976359 (+) True G258439
XR_004579744.1 lncRNA upstream 86587 20908816 ~ 20911082 (+) True LOC117599282
TU305939 lncRNA upstream 90210 20903147 ~ 20907459 (+) False ubxn10
TU305900 lncRNA upstream 207524 20786242 ~ 20790145 (+) True G258362
TU305794 lncRNA upstream 241131 20754692 ~ 20756538 (+) True G258275
TU306029 lncRNA downstream 85650 21085382 ~ 21088222 (+) True G258460
TU306047 lncRNA downstream 93597 21093329 ~ 21093844 (+) True G258476
TU306054 lncRNA downstream 103982 21103714 ~ 21105101 (+) True G258483
TU306031 lncRNA downstream 107615 21107347 ~ 21108015 (+) True G258462
TU306028 lncRNA downstream 115318 21115050 ~ 21132053 (+) True G258459
XM_026920705.2 mRNA upstream 43698 20919088 ~ 20953971 (+) True vwa5b1
XM_034311675.1 mRNA upstream 43698 20924132 ~ 20953971 (+) False vwa5b1
XM_034312060.1 mRNA upstream 92273 20903105 ~ 20905396 (+) True ubxn10
XM_026921039.2 mRNA upstream 92273 20903107 ~ 20905396 (+) False ubxn10
XM_026920955.2 mRNA upstream 94898 20900122 ~ 20902771 (+) True cptp
XM_026920704.2 mRNA downstream 52938 21052670 ~ 21056506 (+) True LOC113530567
XM_034312061.1 mRNA downstream 53108 21052840 ~ 21056506 (+) False LOC113530567
XM_034312062.1 mRNA downstream 53113 21052845 ~ 21056506 (+) False LOC113530567
XM_026921161.2 mRNA downstream 60044 21059776 ~ 21062377 (+) True cdaa
XM_026921415.2 mRNA downstream 63363 21063095 ~ 21067217 (+) True pink1
XR_004579743.1 other upstream 90419 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 92596 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 483474 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 598955 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1518774 19478302 ~ 19478895 (+) True G257622
TU306101 other downstream 228588 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 538522 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1312074 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 1671893 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 2372015 23371747 ~ 23383653 (+) True LOC117599309

Expression Profile