RNA id: XM_026921101.2


Basic Information

Item Value
RNA id XM_026921101.2
length 3512
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113530786
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20045305 ~ 20051294 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgtttactgagattaaggttaggtttagatttaggtgtaggcatagcattaattagctgcattaacaGTTATGAAGCAATTATAATAAGATGAAGGTTCTCATGATGAtagcaagaaaaacaaatctactcctgagaagtgtgtgtgtgtgtgtgtgtgtgtgttttgtgtgtattaaAACATTGCTGACACTTGGGTGCCACCTTGTGGCATTAAACAGAAACATAGTTTAAACTGATGATTGGATGAGTATATTCACTATAAAGACAATAACATGGAAGACAAAACGACCAAATCATGtttctgaattattattttgtgcattttcgCCTTTATAGCTCTCTGTTTACTTGAAATGAACTATGAAATGCATCAAAATCGACCAAatttcacatctctctctcagttctactggcaaataaatattattccCCTCCCCTAAATGTGATGCCCCTCCCTCCccctcagcagcagtgatgaCGTCGGGGAGGCCAAGCAGCTCAGCACACAGATGGTGACGATTTTCTGACGTCATGGAACTATGACGCCATGCGATCTATGACGCAATAATCGACTTTGCTGCttttaaacagaaacacatgCTCCAGTGATCACGGATCAGTCCGTATCGAAGCCTCACTGCACACGGTACAGAGAGCGTCATGTCTTCTGTGAGAAAAATGTCTAACAATTTCACAGATTTTGAGACGAACCGACGAAAGCAGATTCTCTTGCCCATGCCTCCTAAAGATGAGAAGCCGACACATTCAGGGCGTCTGCTGAGGAAGAGATGGGAGGCCGTGAAAATGCAGGAAAATGTCCAACTGCAGATAAAGGAATTTGAGTTGTCTCAGCATGCACTGCTCGAGCGTAAGGAAAAGCTGAAGGAAAAAGAACAGCAGATGCAGCACCGCATACAAACCAACAGCTTCCTAAAGCATAATGAGGAGCAACGGTGTGACGCAGAGAGAAAAGCAAGATGCAACAAGGAGCTGATTAAGAAGAAGCAGGTGTACCTCCAAGAATTAAATGAGGAACTCAATACTTTGatcacacagcagcagcagctgaggAAGCAAATCGAAACAAACTGCATTTATGCCAAATATATGGATGCAGTGATGCAGGAAAGCAAGCAGTTTCAGGAGACACATGAACTGATCACACACTATGAGACACGGAAGCAGATACAGGAGGAGTTGTTGGCTAGAATAGAGAAGAAGCAGGTGGAGATGGCGAAATCCCATGATGAGTTGGCCAGGGTGAGGGAAGAGTACTTCCTCACACGAGTGAATCACGAGACCAGGATCAACCTGCTGAAGAGCGAACTGGAAAAGGCCAAACAACATGTGCTTAATTGGGAGGCAACGTGGAGCGAAGTTCAGATGTCAGCCAAAATGAAAACCTATCTACAGGCTAGAATAAATTTGGCCACATTTAACATATCCAAGAATCTGTGGAAGATGGGCACCGACATCCCAAAGCCAGTTAAGCCAGAGGAGACTATAGAAGTGCTGGATAAGATTCAGGAGTTCATACGTGATCTGAACTCGATCTGGGAGAAAGTGAGCAAATCTGAATCCGAAAGAGCTAACCCTTACACTGGAGAGCAGAGCAACAGCGGTACAAAATtatgacacaaaacaaaaacaaaatccaacacAAAATGCTAATTACAACTGGTTTAATTTTATACCTCCTAATCACCAGGGGCGCTGTTTGAATACCTGAATACCTTCGTATGACCTTCGTAAACAATCAGAGGTCAATCTCCTGGAAAGCGAAAAACGCTGGGCTGTCGGTAGAATTTAAATTTATACCCCTGCAGCTTAGACATCAGAATCCaccagaaatgtttttaatataaagtgCTGACAAACCTTGTCCTTTATGGATGGGCTCTGCAGGGCTTCTAGTGGTGGAGGATGTGTTTTGGTGTAAATATGAGGCTCTCAGATGCCTGTCAGGAGTCTGAGTGCGTGACATTTGTCTGTTTAGTGCTTGTAAGAGGCTGACAGAAATTATGTGGGCGCCTAGCTGATAAGCCTGGTTGTGCTGCAGGTGTCAATGGCAGGTATGATTCCCAGGCCAAGGCTAAAGTTCAGTTGTCGGTTCACCATCAGCTGGGAAATGTCTCCCAgatgcagctataaacatagCACGCTTCAAGAGAGACTTTAATCATCTACTCGGCTCAGAATCAAGATCTAATTTCAAGAACCGGCCTTGGTGTCTCCAAGGCCTAGTGTTGGCCTTGGTGTTGCTTAGCACAGGGAATGTCAGAACAAAAGGCTGATGTTTTTGCTGATATGGTCGATGCCGAGGCAGCCGACACATCGCTGATGTTCATTCATGGTTACCAGAGAGCTTAGACATTCACTGCATGAGTGTGAATCCTGTGTGTATTGTGGAAATCAACTAACTCGGTGGCCCAAGCAGACATCAGGTTTATCAGATGGTGAGTGATAGAAAGAAAAACTCTGAGGGAAACTATACTCAGCAAGGGACTGAGAGATGAATGCAGCACAAAGTCGCAAAATGGTTGCAGctagcttgaaaaaaaaagagagaaatccAGGTGTTTAAACCCTCCCCCCTGGCAGTTAGGAGGCATGAAATTGTGCCAAGTTCAACAAATAAAccacaataaaaatgaatagcaGCCAGGTCTTGGGTCTTGGTCTGTGACTGGCTCAGTTTCTGGAAGGATTAATCTTTGTTTGGTTCCggattttttacattttaataacgGAAAGATCAGTCAGGCTTTCATATAGATATCCATGTGAACAATGTCAAATCAGCACCAGGTGAggctacaaatacacacacacacacacacacacatacatacaaatgaatgaatgaatgaatgaatgaatgaaacccAAAGcatatgatataaaaaaaaatgcaaggtTTTATACAAAAACAGCCAATGTGGAACACAGATTCCATATTTTAATAGCTTTCTTGTTGCATGAGCTAGTTAATGttttttcaaaatgacaaaaagggATTTCATATGCACATAATACTTTTCtagcaaaataattaaattacaaataaaatattcagtacCAATTCTATTTCATAATTAGTAAACCCAAATGATAAATTTTCTAGATACAGTTTAAATTCACTGTGGATTGATCCcaaaataatatgattatataatatgatatacaCAAGTTTTCGAGTTTTGGTAGATATTACATGTGTTTGAACGAGTTTTACAAAACTCTGGAAACCATAGCCAGAAGTTATGCACTAAGAcaaatcataataatcataatgcaACATCAGTTGGCTTTGTATATGACCATGTCTAAAACATATAATGAAGAAGCCTGACTTTATAGTGTTCTGTAATGAGTATGGGACTGATGAGTGTCTTTGTGTCAGAAATATGAGCATTAGTGACACAGCAGGTAGATTTGCTGCCTCAaagctccagaaggaaaaaccatgcattaagagccggggggtgaaaactttttgaatttgaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305265 lncRNA downstream 430626 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 454175 19586328 ~ 19591130 (-) True G257870
TU305250 lncRNA downstream 463623 19580212 ~ 19581682 (-) True G257866
TU305220 lncRNA downstream 565573 19479524 ~ 19479732 (-) True G257838
TU305201 lncRNA downstream 579969 19464054 ~ 19465336 (-) True G257819
XR_003403186.2 lncRNA upstream 127 20051421 ~ 20057906 (-) True LOC113530857
TU305425 lncRNA upstream 77611 20128905 ~ 20129112 (-) True G257980
TU305460 lncRNA upstream 92731 20144025 ~ 20144249 (-) True G258003
XR_003403139.2 lncRNA upstream 263068 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 312761 20364055 ~ 20373180 (-) True LOC117599243
XM_026920137.2 mRNA downstream 11803 20008581 ~ 20033502 (-) True c1qtnf12
XM_026920112.2 mRNA downstream 67517 19968226 ~ 19977788 (-) True olfml3a
XM_026920753.2 mRNA downstream 182224 19849660 ~ 19863081 (-) True klhl21
XM_026920857.2 mRNA downstream 204698 19822267 ~ 19840607 (-) False nol9
XM_026920675.2 mRNA upstream 22566 20073860 ~ 20098987 (-) False nckap5l
XM_026920676.2 mRNA upstream 22566 20073860 ~ 20098987 (-) True nckap5l
XM_034311797.1 mRNA upstream 22566 20073860 ~ 20098604 (-) False nckap5l
XM_026920679.2 mRNA upstream 22566 20073860 ~ 20096623 (-) False nckap5l
XM_026920677.2 mRNA upstream 22566 20073860 ~ 20090775 (-) False nckap5l
TU305224 other downstream 423745 19615527 ~ 19621560 (-) False magi3a
XR_004579690.1 other downstream 658264 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 916769 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 980723 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 1532048 18509155 ~ 18513257 (-) False LOC113530839
XR_003403201.2 other upstream 49705 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 52480 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 59169 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 200876 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 779534 20830828 ~ 20867958 (-) False LOC117599256

Expression Profile