RNA id: XM_026921111.2


Basic Information

Item Value
RNA id XM_026921111.2
length 2407
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC113530792
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12975444 ~ 12987137 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGTGACGTCAGCACGTCACGTCAGCTGTGTTGTGTTTACATCAGaccgttttttttcctctgccaGAGTCAAGTTCAGCGCTGTTGTTGTGCTGTGTTTAAACATTTCCAAGTGAAATGTGGAAAAGCAGCGTTTATGCGATCGATGGGCAAACACATGGGTGAAACGGTTGTCGATTCCGCCATCGCACGACTGTGCTAGGCCTCTGTCCTCGCTGAccccagacacacactctctccttcACCATGGGTGGTGCTGTGAGTGCCGGAGAGGACAACGATGAACTGATCGACAACCTGAAGGAGGCACACTACATTCGTTCAGAGTTGGTAGAGAGGGCTTTCCGGGCCATCGATCGTGCCGATTACTATTTGGAGGAGTACAGGGACAGTGCTTACAAAGACCTGGCCTGGAGGCATGGCAACCTCCACCTGTCCGCTCCCTGCATCTATTCAGAAGTGATGGAGGCGCTGGAGCTGCAGCCTGGCCTGTCTTTCCTCAACCTAGGCAGTGGAACAGGCTACCTCAGCACCATGGTGGGCCTCATCCTGGGTCCATTTGGTGTGAATCATGGTGTTGAGCTGCATGCAGATGTGGTGGAGTATGCCTACCAGAAACTCGACTACTTCATCAAAACCAGTGACACCTTTGACAGgtttgagTTCTGTGAGCCATCGTTTGTGGTGGGTAACTGTCTGGAGATTCCTCCAGAGAGCCGCCAGTATGACAGAGTGTACTGTGGGGCTGGAGTGCAGAAAGAATATGAAAACTACATGAAGAACCTGCTGAAGGTTGGAGGAATCCTAGTGCTGCCTCTGGAGGAGAAGTTAACCAAGATCACACGCACTGGTCAGAACTCCTGGGAGACGAAGAAAATCATAGCTGTGACTTTTGCTCCTCTGGTGCAGCCCAAGCAAAGCATTAATGGGAGAGGCAAGAGTGTGCCACTGCCCATCTTTGAGGTGCGAACACTGCAGGATTTGGCACGCATCTCCATCCGCCATACCCTGCGCCAGCCTACGGAGCTGACAGAGGGCCGTTCCAAAAGGCGGGTATCGTTCCCTGGAGCTCGTGCCATGCACCGCTATGGGCCTCGCTTCGAACGCCGCCGATTCTGTCGCCGCTTCTACCGCCAGTGCATCAGCTCCACCATCCTTCACGAGTCCATGATGCCGATGGCCACAGATGACTGCACCTACCCAGGAggagtggaagaagaagaagaggaggaagctGAGGAGGAGAGGAACTGCCACCAAACAGGGGGAGACCTgcaggaagaggatgaggaagaggagagtgCCGCTGGTGAAGAAGAGGAGAAGGTAAAGCGAGTTGAGGCACCCGTCAATGTTCTGAGGCAGAGGATCCTGGGACTGCCATTGCCTGAGCCGCTCAAGATGTATCTCTTATATTATCGTGAGAAATGAGTTAAAGAAAGTTGGTGCCAATGGGCTAAACTGAATTTTAAAGGTCCAACTCACATGAGTCCACCCATGATTAAATCACTACCCCTTTTCCCATTGAGACACAAACTTGCTGCATTCTGGATGCATGAAGAACTCATATGGGTTTCTTGCACTTTCTTCTTACCACTTGTTTgagctattttttatttttttttggagtcCCTTCTGTGATTTCTGTCTGATTTTAGAAACCCGATCCCCTTTTTGCAGTGAACAAACACCTGTACATCATCTTCATGAGGCTGGTGGACTATTTCAGCAAGATTAGTGTAATGCTATGACTTGAATGACAGTAGCATCATTTTTGGATGTTTGCCAAGATTGGTGTGATAGAGTAAAAtcattgtatatttttctaTAGGTTTATGAAAGCTGTTGTCTATTGTTGAACTGCTTTCCTTGTTAGAGTCTCTCTTATCATAAGGTACTCAATTCCATTTGCATGTGTAGTGCTACTGTGCACCTGCATTTTGTTGTGATGTGTTTCAACACTTTATGCTGTGCAAGTCAGTTTATGTTTGGGGATAAAGATACATTCGACACAGTCATTCTGATGTCAGGTTAAAACAACTGTTAAGGTCTGCACATCAcgtgtaaattaaattatttattgtgcCCCTAGATtccagcacacagcacacaccccACTGCAACATGCACACATGACATGCTTATGAGCATGACATGGAAATAATACTCTCaagagcagtggttctcaaagcaGGGTGTGGGGAAGTATAGTCATGCAGCATAGCCTGGGGACTgtgactttattatttatttccagaCTACagttatcaaagttattatgtttaataatgaGTTCTGATAGTTAACTGGTCACTTGAATCGGATTGGTTTAGTCCAAACTCcaaacttggacctaatgtgttatGTCTGTGGatatttcaggaataaaaagctctgtgactaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300854 lncRNA downstream 5433 12968364 ~ 12970011 (-) True G254107
TU300857 lncRNA downstream 42305 12932725 ~ 12933139 (-) True G254110
TU300856 lncRNA downstream 43024 12932219 ~ 12932420 (-) True G254109
TU300848 lncRNA downstream 51432 12923719 ~ 12924012 (-) True G254101
TU300819 lncRNA downstream 73167 12897542 ~ 12902277 (-) False plagl2
TU300905 lncRNA upstream 153874 13141011 ~ 13141219 (-) True G254153
XR_003403150.2 lncRNA upstream 213882 13201019 ~ 13202631 (-) True LOC113530405
TU300928 lncRNA upstream 264003 13251140 ~ 13251353 (-) False oprl1
TU301036 lncRNA upstream 441153 13428290 ~ 13488493 (-) True G254270
XR_004579752.1 lncRNA upstream 477054 13464191 ~ 13465215 (-) True LOC117599295
XM_026920426.2 mRNA downstream 41136 12897474 ~ 12934308 (-) True plagl2
XM_026920427.2 mRNA downstream 71437 12897474 ~ 12904007 (-) False plagl2
XM_026921372.2 mRNA downstream 320623 12615024 ~ 12654821 (-) False slco4a1
XM_026921371.2 mRNA downstream 320623 12615024 ~ 12654821 (-) True slco4a1
XM_034312213.1 mRNA downstream 321584 12615024 ~ 12653860 (-) False slco4a1
XM_034312114.1 mRNA upstream 8283 12995420 ~ 13028887 (-) False myt1b
XM_034312115.1 mRNA upstream 8283 12995420 ~ 13028887 (-) False myt1b
XM_034312112.1 mRNA upstream 8283 12995420 ~ 13028887 (-) False myt1b
XM_034312111.1 mRNA upstream 8283 12995420 ~ 13028887 (-) False myt1b
XM_026921362.2 mRNA upstream 8283 12995420 ~ 13025005 (-) True myt1b
TU300417 other downstream 816084 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 834271 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1082442 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1083024 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 1406914 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1142079 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1142079 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1142079 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1142079 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1712135 14699272 ~ 14704270 (-) False G255071

Expression Profile