RNA id: XM_026921115.2


Basic Information

Item Value
RNA id XM_026921115.2
length 3097
RNA type mRNA
GC content 0.43
exon number 4
gene id epm2a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22550556 ~ 22569855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cattgtcattCTGTCCTGTAGGAATTTAAATTCAATCTGGTTTGACtttatcagcattttttttattcatactcACAAAGCGATGGgttaaaaagacagagaaaagtgaAACATTTTCACGTCTTTTGTCTCTTGAACCAGTTTCTACTGACGTCAGACATCCTGCACGTGACACTGACTGAGTTTCATTCAATTTGTcgggtttatttgtttttcaccaaTGCACTCATTTTAAATGGCTTCTTAAGCATGACTGTTTAAGTacatgcatttttgtttgtttgtttgtttgttacctTGCactagaatatttttttttctgtttgttggCATGCTGTGATTTCCTTTTCATCATGCAGCAACACACTTTTGGACATgcataaagcattttttttggaaaacaatGTGGATTGATTGCACCACATGGCTCTAAACTCTAAGTGTGTGCCAAAAAAATCATCCCAGTTCCCTCTGGCGGTCAGGACAGCCAAAATCATAGTGCTGCCTGCATGTTCAAGCACGTGACGTGATCAGGACGCGCGGGCAGGGCTGGAACTGGGATTGCGAGGCAATTAGGAGATATAGTTAAAGCTGTGGATGTCTAGGCTTCTCATTAATAATAGGAACAGAACGTGATTTTCATCAGGCATGTTGCATTGATTTGCCTTCTTTTTGTCACAGTTTTCAACATATAAATCATGACTTTAATAAACGCAGGCTGTGTATCCTATTCCAGTGTAACACAGCACAGTGATGGCCTgagctttaatatttaataagaatAAAGGTTTAATGCAGACTTCATATCTGGTTGCATTTTCATGCCTGACAGAAGAGACATGCTGAGAAATGAAcacaacagtgacatttttcctgacattttccaTAAATATGATCCCACAGTGCAAGCCTACGGGTTTGCTTCCTGCAGATGTATCAGTGGAGACCTAAAACACAAATCATGAAATGGTGGAAAGAGTACAGAACATTCCAAGCAAGAGCAGTGCTACTGTAGAAAAAAGTAATGGCCCACATCACGATcgggagtgtgtgtatgaccAAGGCAACATGGTGGACGGGGTGTACTGTCACCCGATTGGTCACTGGATCGAGGTGAGCGGCCACACAGACGAGATGAGGCACACGACAAACTTCTACTTCAGCGTCGCTGGACAACAGGCCATGCACTTTTCCAAGATCCTGCCACGGATTTGGCTGGGCAGTTGCCCTCGGCGGGTTGAGCACGTCACCCTGAAGCTGAAGCACGAGCTGGGCGTCACGGCCGTGATGAACTTCCAGACCGAGTGGGACGTCGTAAACAACTCGCACGGCTGCCGGCGTGACCCCAACGAGCACATGACCCCGGAGACCATGATGTACCTGTACCGAGACTGTGGTCTGGCTTACGTCTGGATCCCGACGCCAGACATGAGCACAGAGGGACGTGTGCGGATGCTGCCCCAGGCCGTGTACCTGCTCTATGGGCTGTTAGAAAACGGTCACAGCGTGTACGTGCACTGTAACGCAGGCGTGGGTCGCTCCACAGCCGCCGTGTGCGGCCTGCTGATGTACGTGCTCGGCTGGAGCCTCAGGAAGGTGCAGTACTACCTTACAGCCAGGAGGGCGGCGGTATACATCGACGAGGAAGCTTTGGTACGAGCGCAGGAGGACTTCCTGCTGAAGTTTGGACGTTTACATCCCCCGGTATGCTGTTCTGAGATGCAGGCAGGAGGACAATGTTAGACATAAATACAGGAGTGGATACTTATActaaaaaatatgattattgCATATGAAGGATGAATACCAGCAGTTTGAGAGAGgtctatataaaatatttgtagttacatttttttattttaattttatttacttttatttaattttttcacacacttttactcCCAAATTGTAGCAtcatcttttttgttgttgttgttgaaataTTATAAAAGAATATTAAAGTGTTCAGCTGCTTCACTGATCTGTATCTCATCTCCGGTTTGGATACAAAtcacctctctttttttattacaacatttttcttggaaatgttcCTCACATTTTCATCTTATCATCCTTCCCCTATCTTCTTCCTGACAAAATGGCCATTTTGCAAAAGGGCACCTTCGAGCCGTTGGCAGCTCTTCTGCTCGCACATGTGGCAGTTATCGTTATTCCATGGACCGCTTTTCCAAATTTAATATCCTGCTAAATCATTTTGTGAATACTCAGCATGGTGGCTATATTTAGATCAGACCTTTCACTCACACCATCACCCAGGCTGCTTTCCAAGGCAGGGTGTGAAAACAGTGTGACCTTTGAATAAATGGGTAGAAATTCTGTCACTGTCCAGAAAGGCttattgaggggaaaaaaatgagaagaagCTGGTAAATTATTCCGAAGGAGAGATTTTAAATTCAGAAAACATCTTGTTCTCGCTCGCTTTCTGTctcagcaaagaaaaaagtgcTGAGTCTTTTTTGTTCTGTCCATCCTCTAAAGTTTCACAGCACCGTTTTAAAACCCCTCACTCATTTCATCTGTTTACTTTGTCCCTCCATGTCTGTTAGAGCTCAGGGTGTCTTTATTTTATAGCACAGTTTGCTGCTTTTCCTGGAGATAAGGTTTCTGCAGAGCTTTTGTGCTGTACTTCAAACTCCTCAGTGTTCAATAGGATAGAAGAAGTGAGCTCTTAAAGCCATGTGTCAGGCCTTGAGGAGGacgtgtgggtgagtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtagatGAGTGTAAGATGGAGCAAGGAAgtgaatgagaaaaaagaacatGACCTTTTTCGACTCATGTTCTACGAATCCAGTAAGTGTGGTCATTAAAGAATGTCAATTTTAGCCACAGACTGTGTGAGGACGTGTCTCGTCCTCGCTCTCCTCTCGCCACTCAGCGAAGCATGTGACAAATTCGAGTGCTTGTTTTCTTCCACAATGTGACTTATTTCTGTGGCCTGGAATAATGAAAGGCTGGacttgtgccatattctttccatctTTTAATAAAGGATTTGTGGGCTGTTTAAagattgggatttttttttttata

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:2001070 starch binding molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579704.1 lncRNA downstream 80803 22467663 ~ 22469753 (-) True LOC117599239
TU307005 lncRNA downstream 126314 22422592 ~ 22424242 (-) True G259337
TU306958 lncRNA downstream 179467 22341861 ~ 22371089 (-) True G259294
TU306775 lncRNA downstream 514593 22031278 ~ 22035963 (-) False cpeb2
TU306772 lncRNA downstream 529405 22016486 ~ 22021151 (-) False cpeb2
TU307420 lncRNA upstream 86113 22653338 ~ 22656929 (-) True G259692
TU307467 lncRNA upstream 175519 22742744 ~ 22787979 (-) True G259724
TU307563 lncRNA upstream 402658 22969883 ~ 22973246 (-) False si:ch73-217n20.1
TU307564 lncRNA upstream 439135 23006360 ~ 23010550 (-) True G259811
TU307557 lncRNA upstream 443624 23010849 ~ 23012362 (-) True G259809
XM_026920940.2 mRNA downstream 245173 22284221 ~ 22305383 (-) False LOC113530701
XM_026920939.2 mRNA downstream 245173 22284221 ~ 22305383 (-) True LOC113530701
XM_026920417.2 mRNA downstream 502168 22016047 ~ 22048388 (-) False cpeb2
XM_026921251.2 mRNA upstream 3221 22570446 ~ 22579027 (-) True fbxo30b
XM_034311896.1 mRNA upstream 12927 22580152 ~ 22621931 (-) True LOC113530559
XM_026921134.2 mRNA upstream 64064 22631289 ~ 22642289 (-) True LOC113530805
XM_026921105.2 mRNA upstream 166727 22733952 ~ 22741554 (-) True LOC113530789
XM_026921205.2 mRNA upstream 191226 22758451 ~ 22762020 (-) True pdyn
TU306971 other downstream 101129 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 595951 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1195859 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 1380858 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 1682598 20830828 ~ 20867958 (-) False LOC117599256
XR_004579695.1 other upstream 631357 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 1196449 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1934508 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1938403 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 2220465 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile