RNA id: XM_026921119.2


Basic Information

Item Value
RNA id XM_026921119.2
length 1440
RNA type mRNA
GC content 0.53
exon number 5
gene id ntsr1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12545673 ~ 12572508 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACCCTGCTGCGTCTCCACCCTTTCAGAAACTCATCCAGTCAAATAAAGCGTAATAACTGCTTTATTTAGTCGACGCCTCGTCTGTGATGGAGTAATTCCAGACTGGTGTAAAAGGGAGAACTCAGAACAGTATGGATGTAAACAGCACACTAACAGAGCTCGACTCTCTGAAATTGCGCGCCTTGACGGAGCAACTTGTAGCGCGCGCGAACAGTTCAGTGCCGCTTCGCCATAACGAGACGGACTCCGCTCCTGAGGAGGACCTGGACGTGAACACAGACATTTACTCTAAACTGCTTGTCACCGTGATTTACGTGGTTCTGTTCGCTATCGGCTGCCTGGGGAACTCTATAACGCTGTACACCCTGCTGACAAAGAAGTCTCTTCAGAACCTGCAGAGCACCGTGCACTACCACCTGGCGAGCCTGGCCGTGTCTGATCTGCTCATCCTCCTGTTCAGCATGCCCGTGGAGCTCTATAACTTCATCTGGGTGCACCACCCGTGGGCTTTTGGCGCGGCCGCGTGCAAGGGCTACTACTTCCTGCGCGACGGCTGCTCATATGCCACGGCTTTCAACGTGGCGAGCCTGAGCGCAGAGCGCTACATGGCCATCTGCCACCCATTTAAGGCGAAAAGCGTGATGTCGCGGAGCCGCACCAAGAAGCTGATCAGTGGCATGTGGGCCGCTTCCTTTCTGCTCGCCACACCGATGCTCTTTACCATGGGCCAGAGGAGTGTGGACAGTGAACCCATATGCACCACCATCGTGTCCTCGGTCACGGCCAAAACTGTTCTTCAGGTGAATGCATTCCTGTCATTCATTGTTCCCATGGGTCTGATCTCAGTGCTGAATGGAGTCATTGCCAGTCAGCTTCTTCGTATGTTTCGTGAGGCAGCTCAGGACAACCGTGTCTGCCTTGTTGGGGGTAATGCCACTATGCTCAGCGTTGCTGTGGAGCCCAACCGTGCCCAGTCCCTGCGCCATGGCGTTATGGTGTTGCGAGCTGTAGTCATTGCTTTTGTGGTCTGCTGGCTGCCATATCATGCCCGTCGTCTGATGTACTGTTATGTGACTGATTGGACTGACACTCTCTATGACTTCTATCACTATTTCTACATGGTCACCAATGTGCTGTTCTATGTGAGCTCAGCAATCAACCCTGTCCTTTACAACCTCGTCTCGACCAACTACCGCCAGATCTTCTTCTCCACGCTGCACAATTTCTTCCTGCCATGCCGACGTAAAAAGCAAACACGCATGCTCACCAGGCACTCTATCAGCATCTGCAGTAGCCACACTTTCTCTACCAATGTCGTTAAAGAGACTGTCTACTGATCAGTGGCAACAGCCCATCACAAAGGTCCTCAGCAGAATTCTTCCATACGTGGAGCCTGCAGTGTGATGGATGTGACTGCTGTGTGAGGAATGCATCGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300547 lncRNA downstream 152020 12392363 ~ 12393653 (-) True G253843
TU300430 lncRNA downstream 327929 12217424 ~ 12217744 (-) True G253749
XR_003403159.2 lncRNA downstream 394728 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA downstream 394812 12143714 ~ 12150861 (-) False LOC113530483
TU300190 lncRNA downstream 640987 11904277 ~ 11904686 (-) True G253538
XR_003403193.2 lncRNA upstream 34033 12606541 ~ 12607682 (-) True LOC113530910
TU300710 lncRNA upstream 88736 12661244 ~ 12709317 (-) True G253977
XR_004579658.1 lncRNA upstream 119837 12692345 ~ 12714075 (-) True LOC117599211
TU300707 lncRNA upstream 121111 12693619 ~ 12714080 (-) False LOC117599211
TU300797 lncRNA upstream 235872 12808380 ~ 12808599 (-) True G254052
XM_026920424.2 mRNA downstream 39710 12485170 ~ 12505963 (-) False snphb
XM_026920423.2 mRNA downstream 39710 12485170 ~ 12505963 (-) False snphb
XM_026920421.2 mRNA downstream 39710 12485170 ~ 12505963 (-) True snphb
XM_026920422.2 mRNA downstream 39711 12485170 ~ 12505962 (-) False snphb
XM_034311917.1 mRNA downstream 115178 12422647 ~ 12430495 (-) False LOC113530362
XM_026921372.2 mRNA upstream 42516 12615024 ~ 12654821 (-) False slco4a1
XM_026921371.2 mRNA upstream 42516 12615024 ~ 12654821 (-) True slco4a1
XM_034312213.1 mRNA upstream 42516 12615024 ~ 12653860 (-) False slco4a1
XM_026920426.2 mRNA upstream 324966 12897474 ~ 12934308 (-) True plagl2
XM_026920427.2 mRNA upstream 324966 12897474 ~ 12904007 (-) False plagl2
TU300417 other downstream 386313 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 404500 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 652671 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 653253 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 977143 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1556708 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1556708 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1556708 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1556708 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 2126764 14699272 ~ 14704270 (-) False G255071

Expression Profile