RNA id: XM_034311922.1


Basic Information

Item Value
RNA id XM_034311922.1
length 2267
RNA type mRNA
GC content 0.51
exon number 14
gene id mcoln3b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23951660 ~ 23967886 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTATCTGTCAGCCGGTGAAGTCGAGCGGCTAGTGATTCGGCGCTGATTTCGTGATTTTTGTGAGATTTTGGAGTGGAATTGAGTCGAGTTAAGTGTTGAGTGACAGATGAGGATGTCTACTTCAGAGCTGTGGGACTTTTCCGCTCTTTAATTTCGTCTTGAGTGAGTTAGAGGAGTTTTTCTGGGAGAAGcgtcgctgctgctgctgctgctgctgctgtggtgctcagctgtgaatgagctgcagacATGGATGACTTGGGAGCTTCCTATCTGGCCTTTAACGATTTTAACAGCAATGGCGGCTCGCTGTGGGCGGAGTCACTGGCCCATCAGGAGCGTCAGGAGGTGGAGAGCTTCAGGAGGAAACTCAAATACTTCTTCATGAACCCCTGCGAGAAATACCGAGCTCGCGGCAGGAAGCCATGGAAGCTGATGCTGCAGATCATCAAGATCGCCATCATCACCATCCAGctgGTGTCGTTTGGCCTGAGCAATCAGATGGTGGTGACGTTTAAGGAGGAGAACCTGATGACCTTCAAGCACCTGTTCCTGAAGGACTACGCCGATCAAACCGCTAAAGCCTACGCCGTGTACACTCAACACGAGgtctacacacacctgtcctaCATCGTACagcagTTCCTGAGTTTACAGAACATTACGGTGGGGAACCACGCATACGAGAAGAACGATCATCTCTACACTCCTCTACTCATCTGCCAGCAGTTCTACCACAACGGCAGCATCTCCCCGGGCAACGAGACCTTCGAGATCGACGCCAAGGTGGAGGAAGAGTGCCTCGAGATTTATCCTGCCCAGGCGTTATCCACTGCGGAAGACACACACCTGTCCAACTTCACGCTGCAGTTCAAACGGTTGCTGGAGGTGAACGTGTACTTCACTCTGAAGGCCATTAACCTGCAGACGGTGCAGCACCACGAGCTTCCTGACTGCTACGACTTCAGCATCATGATCACCTTCGACAACCGCGCCCACAGCGGCCGGATCAGAGTGGACCTGGACAACGAAGTGGACATCAACGAGTGCCGAGACTGGAAAGTCACGGGAGCGTCTCCTAAGAACATCTACTACACGGTGCTGTTCGACGTGGTGATCATTCTCACGTGTCTGGCGTCTCTGGTCCTCTGCACGCGCTCCGTGAGCACCGGAGTTCAGCTGCAGCTTGAGTACACCAGCTTCTTCCTGAAGCATTATGGGAAGCGAGTGTGTTGGTCTGACCGGATGGAGTTTATTAACGGCTGGTacatcctcatcatcattaGCGACGTCCTCACCATCACCGGCTCGCTGCTCAAAATCGCCATCCAGCTCAAGGCTTTTACGAGTTATGACATCTGCAGCATCCTCCTGGGCACCGGCACCATGCTCGTGTGGATCGGCGTGCTGCGCTACATGGGCTACTTCAAGAAATACAACATCCTGATCATCACCCTGAGAGCGGCGTTCCCCAACGTGATCCGTTTCTGCTGCTGCGCCGCCATGATCTACCTCGGCTACTGCTTCTGCGGCTGGATCGTACTCGGACCCTACCACGAGAAGTTCCGTACCCTGAACACGGTGTCCGAGTGTCTGTTCTCCCTGATTAACGGAGACGACATGTTCGCCACCTTTAAGAACATGCAGCAGAAGAGTTACCTGGTGTGGCTGTTCAGTCGTGGTTACCTGTACACCTTCGTCTCGCTCTTCATCTACATGGTGCTCAGCCTCTTCATCACCCTAATCACCGACACCTACGAGACCATCAAGcagcagttggACGGAAATCCCGTGTCTGAGCTCCAGGCCTTTATATCCGAGTGTAAAGATCATCCGAACTCGGGCTGTTACCGTGTGGAGGACCGATCCTCTCCCTGCCTCTTCTGCTGCACTCGGAGgCTCAGCGACCTGCACGAGAGACTGGAGTGTTAAACACGGGACGCTGAAGTCACACCGAAAATAATTCATCATTACAGTTTAATCTACTTACATCTAAACACAAAAAGGCTATGAAGGAGCATTGGCAGTGTTTCCCACTCGCTTTATTTCTGTAGGTCAGACTGAACACCTAACAGCACTTGCACTTGCAGCTCACAGTTGGGAATTTATTCAGCGATGcacaaaactataaataaatatttgttacatcataatttaattttttttgcggCCATGCAGTCTGCTTTATGCACTTGATACTTGGTTTTTGAATTTCCACCTGAAGATTTcttgctataaataaaataaaatggtagatttctgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308096 lncRNA upstream 33269 23917881 ~ 23918391 (+) True G260232
TU308080 lncRNA upstream 82104 23867651 ~ 23869556 (+) True G260217
TU308086 lncRNA upstream 89090 23861642 ~ 23862570 (+) True G260223
TU308085 lncRNA upstream 124029 23826892 ~ 23827631 (+) True G260222
TU307893 lncRNA upstream 389276 23527428 ~ 23562384 (+) True G260074
XR_004579726.1 lncRNA downstream 34663 24002549 ~ 24003381 (+) True LOC117599261
XR_004579725.1 lncRNA downstream 42789 24010675 ~ 24013004 (+) True LOC117599260
TU308299 lncRNA downstream 55490 24023376 ~ 24030335 (+) True G260410
TU308322 lncRNA downstream 163832 24131718 ~ 24131958 (+) True G260430
TU308323 lncRNA downstream 167908 24135794 ~ 24140619 (+) True G260431
XM_026920473.2 mRNA upstream 29684 23888706 ~ 23921976 (+) True syde2
XM_026920474.2 mRNA upstream 29686 23888706 ~ 23921974 (+) False syde2
XM_026920271.2 mRNA upstream 76273 23872817 ~ 23875387 (+) True c16h1orf52
XM_026920531.2 mRNA upstream 87222 23809480 ~ 23864438 (+) False ddah1
XM_026920938.2 mRNA downstream 80130 24048016 ~ 24055524 (+) True gpx7
XM_026920901.2 mRNA downstream 123236 24091122 ~ 24131107 (+) True slc1a7b
XM_026920900.2 mRNA downstream 123236 24091122 ~ 24131107 (+) False slc1a7b
XM_034311701.1 mRNA downstream 198834 24166720 ~ 24184554 (+) False LOC113530931
XM_034311699.1 mRNA downstream 198835 24166721 ~ 24188371 (+) False LOC113530931
TU307780 other upstream 562346 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 568007 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 568007 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 1272110 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1639772 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 64341 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 300691 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 657051 24624937 ~ 24634545 (+) False ddx58

Expression Profile