RNA id: XM_026921150.2


Basic Information

Item Value
RNA id XM_026921150.2
length 5594
RNA type mRNA
GC content 0.44
exon number 27
gene id nfascb
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11863151 ~ 11884023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAAGAGACAGCTGCAAATAGATCACATTGGTTTGAGTGGCTTACAGTCAAGGAAACATCTGTCGAGATATTCATTGTTTTGGACATATTTCTATCCTACTGGTGCTGCAACTGGTGCTGCAACTGGGACTATATTTGCGCCAATCTATAACTGGACTATTATGATATGAGGATAACTGCAGATTTATATTCACATCAGAGGACACTTGACATCAGAGAGTATTTGGTGGCATATTGCTGGTGGCTGTTTCAGAGATGAGGACTGAAAGATTGTGGGAGATTCTGGCTGCATTCATATTCCTGTTGCAGATATGGAAACAGGTATCTGCGGTGGAAATCCCACCGGATGTGAGACAGCCTCCTATGATAATTAAGCAAAGCGTCCAAGATCATATAGTGGAGCCAACAGACCCTATCATAGTGGAGTGTGAGGCCACTGGAAACCCTCCTCCAGTCTTCACTTGGACACGTAATGGAGTGTACCTGAATGTTGCACGTGACCCTCAGGTCACCATGAAGAGGCGCTCTGGCACTCTGGAGATATTTTTTTGGGGACGTCCGGAAGATTACGAGGGCATGTACCAATGCACAGCTACTAATGAGTTTGGTTCAGCTCTATCCAGTCACATTCATTTGCGCGTCTCCAAGGCTCGTACATGGCTGAAGGAATATTTGGAGccagtgtctgtgtttgtgggtCTTCCTTTGATTCTGCCCTGTAATCCTCCTGTGGGCCCACCCAAACCTCAGACCTACTGGATGAACAGCTCTATGGTACCAATTCGTCAGGATCGTAGAGTATCAATGGCAGAGAATGGAGACTTGTACTTCTCCAGCGTCATAGCTGATGATGCGCTAACAAACTATGTGTGCACAGCTCGCTTCCCCAACTCCAACATCATCCAGCAGAAACCTCCACTAATTCTTCAGGTGCACACAGCCCGTATGGCAGCTCAGACTGCTCCCAAGTTCTTGAAGCCCAGAGGAACAGCCAGCACTCAAATCGCCATGCTAGGGGAGGAGCTTATCTTGGAGTGTTTCGCTTCTGGAGTTCCAGCTCCCACCATCAAATGGACTAAAGATTGGGAAAGCTTGTCCATGGATGGCATGAAGCTGGAAAACTTCAATAAAACTCTGCACATTAAGAAAATCTCTTTGGATGATGGGGGCGACTACATCTGCACTGCTACCAACAGGATGGGCAGTGTGGACCACATAATCACAGTTaaagttaaatCAACCCCATTTTGGGTCGAGAAACCAGAGAGTCTTATTCTCTCTCGAGACGATAGTGGGCAGATAGTGTGTAAAGCTGATGGAATTCCCAGACCCCAGATACGGTGGCTAGTTAATGGAGAACCTATTGAGGATGCTCCTAAGAGTCCTGGCAGACAAGTATCTGGCGATACTTTGATATTTCGTGCCGTGGTGCCTGATAGCACAGCTGTGTTCCAGTGTAATGCCTCCAACCAATATGGCTACATCCTGGCCAATGCCTTCCTTGCAGTAATGGATATGAGGCCACGAATGCTGGGCATTAGAGATGACTTGGTTAAAGTAATTGAAGGGACTCAAACACTTCTGCACTGCCCATATTTTGGCTCACCAAAACCTGTCCTGCGCTGGTCTAAAGGTGGAGTGGGTTTATTAGAGGGAAGTCGATATAGCATTCTTTCTAATGGAACACTGGAAATAAAGCTCACCAAACTCCAGGACCAGGGGACATATCTCTGCATTGCTAGCAATGTCATTGGTCGAGACGAGATGGAGATACAACTGGAGGTCAAAGAACCCACTAAAATCATCCGTGCCCCACATAATGTTATTGTGATAAAAGGGAGCTTGGCACAATTTGACTGTAAGATCCAGTCTGACCCAACCTTGGAGGTAAAGGTCACCTGGCTCAAGGACAACAAATTCCTGATCTTTGGAAGAAGAATCACAAAGAATGAGGACTCTATGAGCATTGCTGATGTGTATAGAAGAGATGAGGGTATTTATACCTGCAGAGTTAAGACCGAACTGGAGGAAATCAGTGCATCAGCCAAACTCACTGTGatggATCGTCCTGACCCACCTACTGACTTGGAGGTGTCAGATCCATCAGAACGAAGTGTTAGACTTACCTGGGTGCCAGGACTGAGCAACCACAGCCCTATCAAAgAGTATCTGGTGCAGTACACAGAAGATCTGCTTGCTGATTATTGGCTAGTGCCGAGTGGCTGGAAGAACCTGACCCGTTACCCTGGCCACCTGAACTCTGTTGTGCTGCAGCTGACGCCGTTTGTTGAGTACCAGTTCCGGGTTGTGGCTATCAATGTGATCGGCCCCAGCAAACCCAGCAAGCCATCTGTGCATTACGAGACTGGTGGAGCTGTGCCAGATGCCATACCAAGAAACATCCAAGGAAGGGGGACTGGAGTGTTCCGAAATAACATGGAGATCAGCTGGGAGCCGTTGGAGTATAGAGAGTGGAATGGGCCAAAGCTTGGCTACATGGTGTGGTGGAGAAGAAGAGATTCCAGAGAGGAGTGGAAAAATTACACCACCTATTGGTGGTGCAGTCACATTATCTATGAGACGGACACCTTCACACCCTATGAGATTAAAGTGCAGGCTGTCAATTACTTTGGCCTTGGACCAGAATCTCCTGTGATCATTGGATACTCAGGAGAGGATCGGCCCACTGCTGCTCCAGATGACCTGCATGTCTCAGATGTGGAGAGCACGAAGCTGACAGTCCACTGGCACCCTGTTCCCCAAGCCAGCATCATGGGGGAGATTAAAGAGTACACGGTGTATTACTGGCGAGAGAGCAGCCGCCTGCCCCATCACAGCGTCACCACAAGGATCAAATCCAAGAGCTTTAAAGCAAATGGACCTCGGCTTTCTGGCACCCTAACTGGCCTCATTCCCTACAGCAACTACAAAATGTACATAGTAGTGGCCAATAACCGCTTTGAGGGTCCACCGAGCAACAGGATTGAGTTCCAAACCCTTGAGGGAGTGCCATCAGTACCCAGATCCTTCAGGATCATGCATAGGCATTATGACACCATCTACCTGGACTGGGAGGAACCTGCAGAACCCAATGGCATCCTGACCGGGTACATCCTCAAATACCAGACATTGAACGTGTCAGCAGGAGAGCGGATGCTGGTGGAGGAAATCCCCCCCAACACCACACAATTCTCATTGCGCCGCTTTGACCGCTACACTCGCTACAAGTTCAGTCTGGCTGCCCAGACGCAGGTGGGAGTGGGAGAGGCATACACAGAGGAGTCGCCCCATTTCACAACAGAGGAATATACCCGGGAACAAGTGGACATAGTCACGCAGGGATGGTTCATCGGGTTGATGTGTGCCATTGCACTTTTGGTTCTCATCATGCTCACAGtcttcttcattaaaaaaacacgtGGAGGGAAGTACCCAGTGAGAGACAAGCGGGATTTTACACTTGACTCTGTGGATGAGAAGGATGAGGGGTCTTTTGAATACAGGTCTCTTGAAAGGATAACGCGTGTACCCACCCTACCCTACACCAGGCGagaggaggagagccGCCAGGGTCGGAGTCAGGGACACATGCAGAAGAAGACAAACAGTGATGACAGCCTGATGGAATATACTGAAGGTGATGAGATCGAGTTCAACGAAGATGGCTCTTTCATTGGTGAATATACCGGCACCactaagagagacagagactctTTTGCATAGAACAACTCCTAAACATGTTGAGAGAGTGCAAAAGACATGGCGCCCACTGGTCCCTCAAAACCCCAGTTTTACCTCAAACACTGCTGAGCGTGGATGGATGACCAAAATGGCCAAACAGAACTCATGTGCCACTGGCCACCTCATGCAGCAGTTCAGCCTGAATTATGGCAGAGGCATTACACTACTAGTCAAAAGTATGGACGTAAGCTGTGGGTTTTTAATAGTCAACaatgatgtgtgtatttattaaagaatttttcTTCTGAATATTTCATAGATTACCGTTTACACTGCACAATTACTATAACATATTATAGGGGAAAAGCCTTCACAGCCTTTCTTTAAAATAGTTCCTTCACTGAGAATTATAGTCTCCTAATTTACCAACTTCAGGGGCTCTTGAAGGTGCATAAGGTTTTGCTGCAATAAAtctctacattttaaaaataaaatgcaaacaacAATAAAGAAACAGTAGTTGTACAACAATACTATAGAATTTAGTCATAGGCTTTTGTTCCATGTTAATAAACACATAATTTTCcaaatcatgtttattttcataaagtGTCGTGTCCAAATTTGGCCTACACACTTCTTGACCTCTGTGAAGTTATCCATCCATATAAAAAGAAACTGTTGTGTATGTGCTGTTTTGCCCCATAAACATTATTGTTTGTGccaatttggttttattttattgtgccATTTGATTTTTGAGTTGagatattataatgttatttattaatgcgAGTCACTGATAAGTTGAGAATGATGTCATGATGTTACAGTGTATTGAATTATTGTCATTATAATccacatataaaaaaaacagcacaaacaaTACTTTTACAGCACATACATATCTCTTTTAGAATAAGGTGCTACCTTTGCAGAACTGACATTTGTAACCcataagggttctttggtttgtccctctgaaGGAACCTTTAAACAGAGTGTTTCcttcctgttcctgtttccTGTATTAACGACAGTTCTAAGTAGAACACCTTTAGGTAGCTAATGACACTTAACTATCTAAAGAGCCCTTGAGGAACCCCCTTTTTGACTGTATGTTTTTGAAGAACTGTGTTATTTTGGTAGTTGTCAGTTTTGCTGACTCAagtagagtgtttttttttcttgtacatCAATCAGATTTCTCATGTTTGTGAATGAAAGAAGCCAGTGACAGCATGGAGAATAAACATGTGTCTGTTTATATTGTTGATAAAATGAAAGCAGTGGACCTCTAGATCATGATTTGGATATGGATATTAGTAAGTTAGCTGATCATAATATGACaatgtatttttatctttatgaTTTACATATAAACTTGCCTGCATGTTAACATGAAGTGGTGAGAGACATGCAAAAAGTGAAGGTACATGTGTAGTATGCAAAGGATAACTGTAGCACTAGTGACATTATCATTACTAATCACTGTCTGTAACTGTAGTCACAGCTGCATAATGCAGATTCAGACAATGTAACAGTTTGTCTTTATTTAGTTTGTCTGGCATGTACAGAGGTATTTTTCTTTACTCTTCTTTGGCCATATAATTTGAACTGAATGGAGTTTTGTTCTATTCCACCTCTAactactatatacagtatattgaaatTTTATCAGTGCTGTAATACCCTTATGCCAAGCCATTCAATgatcttaaataaaaataaacaatgtatgTATAGTTGTGTCCTATCGACATACTGTCACAAAACACTTTAGAGGATGATGTAATTTAGTAGTCAGTATTGTACTTAGCCAGTTTATGATAACAGAAAGCATGAACTATCTTAAGTTCCTGGATaagccatgtttaaaaaaaaaattaaaaaaaaccttatccAATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300144 lncRNA downstream 3805 11841041 ~ 11859346 (-) False LOC113530816
TU300151 lncRNA downstream 85218 11777718 ~ 11777933 (-) True G253509
TU300120 lncRNA downstream 105221 11755205 ~ 11757930 (-) True G253492
TU300131 lncRNA downstream 118993 11743950 ~ 11744158 (-) True G253499
TU300122 lncRNA downstream 148398 11713177 ~ 11714753 (-) True G253494
TU300190 lncRNA upstream 22417 11904277 ~ 11904686 (-) True G253538
XR_003403159.2 lncRNA upstream 261773 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA upstream 261854 12143714 ~ 12150861 (-) False LOC113530483
TU300430 lncRNA upstream 335564 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 510503 12392363 ~ 12393653 (-) True G253843
XM_026921157.2 mRNA downstream 12690 11838796 ~ 11850461 (-) True LOC113530816
XM_026921153.2 mRNA downstream 12708 11821848 ~ 11850443 (-) False LOC113530815
XM_034312068.1 mRNA upstream 2684 11884544 ~ 11892026 (-) False LOC113530663
XM_034312067.1 mRNA upstream 2684 11884544 ~ 11892026 (-) False LOC113530663
XM_026920866.2 mRNA upstream 2684 11884544 ~ 11892026 (-) True LOC113530663
XM_026920868.2 mRNA upstream 4548 11886408 ~ 11892026 (-) False LOC113530663
XM_026920873.2 mRNA upstream 10291 11892151 ~ 11900392 (-) False naca
TU300077 other downstream 294621 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 400445 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other downstream 400445 11456021 ~ 11462706 (-) True LOC113530309
trnan-guu_24 other downstream 589748 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 604037 11259043 ~ 11259114 (-) True trnae-uuc_4
XR_003403206.1 other upstream 10488 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 11067 11892927 ~ 11893002 (-) True LOC113530993
trnae-cuc_33 other upstream 259242 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 276912 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2247356 14129216 ~ 14150581 (-) False LOC113530423

Expression Profile