RNA id: XM_034311552.1


Basic Information

Item Value
RNA id XM_034311552.1
length 1806
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC113530815
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11821848 ~ 11850443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAACTGCATCCACAATGACAAGACTTATTCTACTCACagGCCTTTGCctgttatttattcatcttggtTCAGCCTATCAGCTTATATGCTACTTCACCAACTGGGCCCAGTACAGACCTGATCCTGTGAAACATTTGCCTGCCAACATTGATCCTTTCCTGTGCACACATCTGATCTACGCGTTCTCCATCATTAACTCTGCAAATCAGCTGGCCACCTACGAGTGGAACGATGAGACTCTCTACCAATCTTTCAATAGCCTGAAGCAAAGTAATCCAAGCTTGAAGACACTTTTGGCTGTTGGAGGATGGAATTTTGGTTCAAACCaATTCTCTACCATGGTGTCCACACAAGCCAACAGAAATACATTCATCCAGTCCTCCATCAGCTTTCTCAGAAAGTATGGATTTGATGGCCTGGACCTGGACTGGGAGTATCCTGGAGCCCGTGGCAGTCCTCCAGAGGACAAGCAAAGGTTCACTCTGCTCTGTCAGGAGCTTCGACAGGCCTATGAGGCTGAAAGCAGTGCTACAGGACATCCCCGGCTTATGGTCACAGCTGCAGTAGCTGCTGGGAAATCAACTATAGATGCTGGATATGAAATTGCTGAGATTGCCAAgTACCTGGACTTCATTAGCGTGATGACCTATGACTTTCATGGGTCTTGGGAAAGTTTCACTGGACACAACAGTCCTCTGTATCAATGGTCTCAGGAAACAGGAGCTCAAATCTACCTTAATACTAATTACTCAATGACATACTGGAAGAATCAGGGTGCTCCAGTGGAGAAGCTGAGGATGGGTTTTGCTACCTATGGCAGAACGTTCCAACTGTCGTCTACAGCGAGTGGCCTGGGAGCTCCATCAAGTGGCCCTGCTTCTGCTGGCACCTACACCAGAGAGCCAGGCTTCTGGTCTTATTATGAGGTCTGCAGCTTCCTTCAAGGAACCAGCGTACAGTGGATCCAGGATCAGAAAGTACCCTACGCCACAAAAGGGGGTCAGTGGGTTGGCTTTGACACCAAGGAGAGCTTTGACACAAAGGTGACCTACCTCAAAGATAATAATTTTGGAGGGGCCTTTGTGTGGGCTCTTGATTTGGATGATTTTACTGGACAGTTCTGTGGACTGGGAAAATATCCTCTCATCAACGAGCTCAAGAAACTGCTAAACAAtggtcctgctgctcctcctgctgaaggtcctcctgctcctcctgctgAAGTTCCTCTTGCTCCTCCTGCTGAAGGTCCTCCAGCTTTGACTACTGTAGCTTCTCATCAGTTTTGTGCAACCAAGAAAGATGGTATCTACCCAAATCCTTCTGACAAAAAATCTTTCATCCAGTGTGCTGCTGGGAGAAAATTTGTACAACCCTGCCCTGCTAGCACCATCTACGACAAGAGCTGCCAGTGCTGCAACTGGCCATAAAACTGCCACAGGTTGTTACTGAACACATGATATAGACatgatttaaattacatttgttaCAGATTAACAAAACAGCACAGACTTGTTTGTAAATGGCTATACACCTGGCTTGATACCTGTGCAAGCATTTTATTTCCCTACCTGtaaaaatattccataaattttcaattttaaatcaTTGATCTTTTCTAATGGGATTTAATTTTGTCTAGTATTCTCTATTTTTAATGGTAATGGCTTGAAAAAATTGTTACATAGACATTCACACAAGTTATGATGCTCTTTGTTGTCAATTGTTTTATTCCAGAATTAGCAATATGCATTGCTaaatgcagtaaaataaaataaatcacaatatTATTTCTATGATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300151 lncRNA downstream 43915 11777718 ~ 11777933 (-) True G253509
TU300120 lncRNA downstream 63918 11755205 ~ 11757930 (-) True G253492
TU300131 lncRNA downstream 77690 11743950 ~ 11744158 (-) True G253499
TU300122 lncRNA downstream 107095 11713177 ~ 11714753 (-) True G253494
TU300125 lncRNA downstream 107672 11712997 ~ 11714176 (-) False G253494
TU300190 lncRNA upstream 53834 11904277 ~ 11904686 (-) True G253538
XR_003403159.2 lncRNA upstream 293190 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA upstream 293271 12143714 ~ 12150861 (-) False LOC113530483
TU300430 lncRNA upstream 366981 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 541920 12392363 ~ 12393653 (-) True G253843
XM_026920993.2 mRNA downstream 80089 11729001 ~ 11741759 (-) False uba3
XM_026920994.2 mRNA downstream 80120 11729001 ~ 11741728 (-) False uba3
XM_026920995.2 mRNA downstream 80303 11729001 ~ 11741545 (-) True uba3
XM_034312010.1 mRNA downstream 96511 11717829 ~ 11725337 (-) False LOC113530831
XM_026921182.2 mRNA downstream 96511 11717829 ~ 11725337 (-) False LOC113530831
XM_026921151.2 mRNA upstream 12708 11863151 ~ 11884023 (-) False nfascb
XM_026921148.2 mRNA upstream 12708 11863151 ~ 11884023 (-) False nfascb
XM_026921150.2 mRNA upstream 12708 11863151 ~ 11881860 (-) False nfascb
XM_026921149.2 mRNA upstream 12708 11863151 ~ 11881860 (-) True nfascb
XM_034311549.1 mRNA upstream 12708 11863151 ~ 11878850 (-) False nfascb
TU300077 other downstream 253318 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 359142 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other downstream 359142 11456021 ~ 11462706 (-) True LOC113530309
trnan-guu_24 other downstream 548445 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 562734 11259043 ~ 11259114 (-) True trnae-uuc_4
XR_003403206.1 other upstream 41905 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 42484 11892927 ~ 11893002 (-) True LOC113530993
trnae-cuc_33 other upstream 290659 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 308329 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2278773 14129216 ~ 14150581 (-) False LOC113530423

Expression Profile