RNA id: XM_034312254.1


Basic Information

Item Value
RNA id XM_034312254.1
length 2863
RNA type mRNA
GC content 0.43
exon number 11
gene id cs
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16708190 ~ 16762693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCATCCAATCCAAAATGCGGATAAATACTAGATGGTTCACCGCTTCCTACTTCAATGCACTACACATGaatgCAGCAGGTGTTGCTGTGACTGCCAGAAATATTAGTGCGTCCACAAATTTGAAAGATGTCTTGGCAGATCTCATTCCCAAAGAACAGACGAGAATCAAGAACTTCAGGCAGCAGTATGGCAAAACCAGCATTGGCCAAATCACTGTGGATATGGTTTATGGAGGGATGAGAGGTATGAAGGGCCTAGTATATGAGACCTCTGTGCTTGACCCTGATGAGGGAATTCGTTTTCGTGGCTACAGCATTCCAGAGTGTCAGCAGCTATTGCCAAAGGCTGCAGGAGGTGAAGAACCACTGCCTGAGGGACTCTTCTGGCTGCTGGTCACAGGCCAGGTGCCCACTGAGGAACAGGTGAACTGGTTGTCGAAAGAATGGGCTAAGAGGGCAGCCCTCCCCTCCCATGTGGTCACAATGTTGGATAACTTTCCAACCAACCTGCACCCTATGTCCCAGTTTAGTGCTGCTATCACTGCTCTAAATAGCGAAAGCGGCTTTGCTAGAGCCTATTCCGAGGGAGTCCATAAGAGCAAATACTGGgagTTTGTGTTTGAGGACTCCATGGACTTGATTGCCAAGCTTCCCTGTGTGGCGGCTAAGATCTACCGCAACCTGTACCGTGAGGGCAGCAGCATTGGAGCCATCGATCCCAACCTGGATTGGTCTCACAATTTCACCAACATGTTGGGCTACAGTGATCCCCAGTTTACTGAGCTCATGAGACTCTATCTCACCATCCACAGTGACCATGAAGGTGGTAATGTCAGTGCCCACACCAGTCACCTGGTGGGCAGTGCCCTATCTGACCCTTATCTTGCCTTCAGTGCAGCCATGAACGGCCTGGCTGGACCTCTGCATGGACTCGCTAACCAGGAGGTGCTTGTGTGGCTGACAGCCCTCCAGAAGGAGCTTGGTGGTGAAGTGTCAGATGAAAAAATGAGAGATTACATCTGGAATACACTAAAATCTGGCAGGGTGGTGCCTGGCTATGGACATGCTGTCCTGAGAAAGACAGACCCACGCTACACATGCCAGCGAGAGTTTGCCCTGAAACACCTTCCTAATGACCCCATGTTCAAGTTGGTGGCTCAGCTCTACAAGATTGTGCCCAACGTGCTGCTGGAACAGGGCAAGGCCAAGAACCCTTGGCCCAATGTTGATGCCCACAGTGGAGTACTACTGCAGTATTACAGCATGACTGAGATGAACTACTACACAGTGCTGTTTGGAGTGTCTCGGGCCCTGGGGGTGCTGGCTCAACTGATTTGGAGCAGAGCACTGGGCTTCCCTCTGGAGCGTCCCAAGTCCATGAGCACGGATGGCCTTATGGCCCTTGTAAGGGCTAAGTCAGCCTAGAGACAACAGGCCAATATAGTTAAGAAGATGGGGTGCAGAATGTTTAGTTGTGAAATAGTCTTTGGACTAAAGAGTTTAAAGAGAAATTCCACTTAAATTAAAAAGGGCCATTATTATTCAATACTGTTATTGTTAAAACTTGAGACATTCTCCAAATTTAGTTAAGTACTTGTGACTGATTTTCCTCTTTTACATATCCTATACCAATTCTGATTGATAACCTGCCGGGGCAAATATATGTAAAGATACATAAAATAAGGAAAGGTGCTGATGaacagtaattaattaattactattTTAGTGAGTTACTTGATTTGTGTGTCCGTACAACATTTATTGGAATAAACAGACAGTTTTCCCAATAAAGAGACAGGTTTTCCCCCACAGCCATTGTAACAAATCCTAAGTATTTGcccttttaaaataatttctcatGCCTTACCTGTATAGTAATGGATGAAAACACATACATTGCCCTTCAAAACCTCAACCTAAATGGTATGACCAGGCATCCTTTCTCCAGGTTATATATCAATCATTTCTCCTGGTAATAACTCCCAAACTGCCAAATGGCCTTTTCTAAATTTAAGATAAATTCAAGGGTTCACCACTTCTGCACTGAACGCTGGGCAGATCTGTCAAAAGCTGAGTATGATGGTACagatttaaagctttaaattttttCATAATAGATTGATTTCATTGGCTTGTAGTTTTCATTAACATTAGTGTTATTGTCCAAGAGCATGCTGAAACAGCAGTCAGAGCAGCCAGTGCTTTCACTTTGCTGGGCCCAaaattattagtttttaatataaaaagaaatgcttGTTAGTTTGGactctttcatttttaagtCTACAAACCACATGTCTTCTTAGGTGTAGAGTTCTTTGGATTTCTAAAttctatacaaaaataattaactgtGAGTACAtaatttgtgattttatttgttttgtaaatacatatatttaaatatatgtaaatacatacattaaAAGCTGTAACCTATATACCCTGTGCATAGGGTTGAGTTTGTTCTCTGGGATGGCACAGGCTGGTACTGATTTGTTTCATGTTTGCTTGAAGGTGATCAGTGGTTTAGATCCTACTGCTCTGTCAACTGACAGGTCTGTAAACACTCCACACACTTACATGAAGACTTATTTTCAGTCTCTTTCCCTGTCTTTATAGGTTTTCACAAATCCAGAGGTTTTATAAACAAGTATTCAATGCTTTTttcctgtagtttttttttttggtcatgatCACTGTATCCTATCAGGTCTGCATTGGAGAGGACATGAATTACTCAAAGTAACTAATGAACTAAGGATGTAGAATGGGGACATTTTGGTTGAATGGAAAAAGATGCTtggttaaacaaaaaaaattggggTGGTTTTGAGGGGGgcaataaatgtttttaacaaaa

Function

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0004108 citrate (Si)-synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303191 lncRNA downstream 70465 16636888 ~ 16637725 (-) True G256162
TU303189 lncRNA downstream 75742 16631392 ~ 16632448 (-) True G256160
TU303198 lncRNA downstream 78673 16628981 ~ 16629517 (-) True G256166
TU303194 lncRNA downstream 81573 16626242 ~ 16626617 (-) True G256164
TU303193 lncRNA downstream 81655 16626242 ~ 16626535 (-) False G256164
XR_003403153.2 lncRNA upstream 18435 16781128 ~ 16782877 (-) True LOC113530431
TU303233 lncRNA upstream 30224 16792917 ~ 16793280 (-) True G256197
TU303235 lncRNA upstream 31751 16794444 ~ 16794769 (-) True G256199
TU303249 lncRNA upstream 66522 16829215 ~ 16829435 (-) True G256212
TU303245 lncRNA upstream 89040 16851733 ~ 16852672 (-) True G256208
XM_026920437.2 mRNA downstream 13159 16647823 ~ 16695031 (-) True fam50a
XM_034311723.1 mRNA downstream 60489 16641460 ~ 16647701 (-) False si:ch211-207e14.4
XM_026920434.2 mRNA downstream 60489 16641460 ~ 16647701 (-) True si:ch211-207e14.4
XM_026920436.2 mRNA downstream 60677 16641460 ~ 16647513 (-) False si:ch211-207e14.4
XM_026920435.2 mRNA downstream 60771 16641460 ~ 16647419 (-) False si:ch211-207e14.4
XM_034311604.1 mRNA upstream 25108 16787801 ~ 16838649 (-) False si:ch211-210c8.6
XM_034311602.1 mRNA upstream 25113 16787806 ~ 16831861 (-) True si:ch211-210c8.6
XM_034311603.1 mRNA upstream 50691 16813384 ~ 16838649 (-) False si:ch211-210c8.6
XM_026920854.2 mRNA upstream 90235 16852928 ~ 16871164 (-) True dazap2
XM_026920775.2 mRNA upstream 362326 17125019 ~ 17171019 (-) False rapgef3
XR_003403156.2 other downstream 13160 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 888036 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 1220331 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 2003920 14699272 ~ 14704270 (-) False G255071
XR_004579684.1 other downstream 2557609 14129216 ~ 14150581 (-) True LOC113530423
XR_004579669.1 other upstream 50691 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 913872 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 1130388 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 1522793 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 1746462 18509155 ~ 18513257 (-) False LOC113530839

Expression Profile