RNA id: XM_034312010.1


Basic Information

Item Value
RNA id XM_034312010.1
length 1770
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC113530831
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11717829 ~ 11725337 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacatgtacagtatgtacatgaACCAAACGGGGTGTGACTGAGAAAAGCAACCGCGCGCAACAAGCGCGAGACTCAGCACTGATTCTGCACGAGCTCATTTTTTCAACTTAGAAATGACTTTAAGTCACTTTTTACCTCACTTTCATCCGTGTTTGTTTGCGGTGTGAACATATTTTTTCGCTTGTTGCCTATTTTCGTGGCTTTTCAACCTTCAACATCAACTTCCAGCATGCATTTCCAATGCAAAAATAGTTTTGCTTTTTCTCAGCATCAGACATCTGACTGATTTCTAACTCCACTACAGGGATTCAAGGTGATGCTGAACTAAAAGTGCAACATCCaggtctctctccctctctttcacaGGAGTTTAGAAGATGTGTGAGAAGCTGTTTTTGATTGcactgctggtgtgtgtgtggctcctGTGCGCTCAGTCAGTGTCCAGCAGCAACCGAAGCTCTAGGGGACATCCAGGTGGAGTAAAACCTGGTACTTGTGAGGTGGTGGCTGCCCATCGCTGCTGCAATAAGAATAAGATTGAGGAAAGATCTCAGACAGTCAAATGCTCATGCCTCATTGGACAGGTGGCAGGAACAACCCACGCACGGCCGTCATGTGTGGAGGcatCTATCGTGCATCTGAAGTGGTGGTGTCAGATGGAGCCGTGCTTGGAGGATGAGGAATGTAAAGTTCTCCCTGACCTCACCGGCTGGTCCTGCAGCTCTGGGAACAAAGTGAAAACCACCAAAGCGACACAATAGCGTGATACTGGCTACATATGCTTTGACATCACACTTTACGGAAACTGCAGAAACTCGTAATGATGTGTTATCACAATCACCTACAGCTACAAGTGTTGAGAATACACAGATGTACACAAATGAGAGAATGTTTgaagagtatatatatatatatatatatgaagtcaCTTTCTGTCAGTGGGTAATGAAcctgttaattttattttatctttgagCAATAATGAGGAGGGAATTTACTCCAATTCCTTTAGTTTATCATCTTAAAAATGTTTCCACCATTCACATAAATCCTACAATCCTACTGAATAAAGGAATTTTCCTGTCCATTAACTTTATGACATTCATTGCTGAGTATTACAGACTCACCATACTTCCTGTGGGGTTCAGGCCACTGAGTCATTTATGTTGTCATATCTCAAAGTTACATGATTGTATTAttcttctctcgctctctgccATAAGCACAGTAATATTATTCTTGCAGTTGACATTTCAGATCATActgaaattctctctctctcacacacacacacacacacacacacacacacctgctggaGCCTGAATGATGTCCACTCTGACACTGGTGTAAAGTCCCTGCACAGCTCCCTGCCTCTGACAGCCTGACTAAGAGAAACAtggaaatattcaaataatgccctaacacacatgcacacactcacccacttGCCGGCCCCATTTATTTTCCATCTGACTGGTTTGACACACCACCTGCAAGCCTGTGGAGACAACTATGGAGCTCTGtatggcagagagagagagagatttataatgttacacttttcttagattttttttatgttgtcatattgtgcattttttgtttAACCTGATTTAGATGACTGTTAAGAATAACTATGATGAATGAACATCCCATCCATTGTCTTATGAATACTGCATGTTGCTTGTTGTTGCTGATGGTTGATATTATTTCCAGAGTTCTAGaataaattttctttttccattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300122 lncRNA downstream 3076 11713177 ~ 11714753 (-) True G253494
TU300125 lncRNA downstream 3653 11712997 ~ 11714176 (-) False G253494
TU300126 lncRNA downstream 4042 11712997 ~ 11713787 (-) False G253494
TU300045 lncRNA downstream 97434 11613240 ~ 11620395 (-) True G253433
TU300091 lncRNA downstream 145810 11571820 ~ 11572019 (-) True G253464
TU300131 lncRNA upstream 18613 11743950 ~ 11744158 (-) True G253499
TU300120 lncRNA upstream 29868 11755205 ~ 11757930 (-) True G253492
TU300151 lncRNA upstream 52381 11777718 ~ 11777933 (-) True G253509
TU300144 lncRNA upstream 115704 11841041 ~ 11859346 (-) False LOC113530816
TU300190 lncRNA upstream 178940 11904277 ~ 11904686 (-) True G253538
XM_026921204.2 mRNA downstream 119443 11587705 ~ 11598386 (-) True LOC113530846
XM_026920457.2 mRNA downstream 149226 11549394 ~ 11568603 (-) False avpr2ab
XM_026920456.2 mRNA downstream 149227 11549394 ~ 11568602 (-) True avpr2ab
XM_026921110.2 mRNA downstream 273898 11438049 ~ 11443931 (-) False emp3b
XM_026920993.2 mRNA upstream 3664 11729001 ~ 11741759 (-) False uba3
XM_026920994.2 mRNA upstream 3664 11729001 ~ 11741728 (-) False uba3
XM_026920995.2 mRNA upstream 3664 11729001 ~ 11741545 (-) True uba3
XM_034311552.1 mRNA upstream 96511 11821848 ~ 11850443 (-) False LOC113530815
XM_026921153.2 mRNA upstream 96511 11821848 ~ 11850443 (-) False LOC113530815
TU300077 other downstream 149299 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 255123 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other downstream 255123 11456021 ~ 11462706 (-) True LOC113530309
trnan-guu_24 other downstream 444426 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 458715 11259043 ~ 11259114 (-) True trnae-uuc_4
XR_003403206.1 other upstream 167011 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 167590 11892927 ~ 11893002 (-) True LOC113530993
trnae-cuc_33 other upstream 415765 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 433435 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2403879 14129216 ~ 14150581 (-) False LOC113530423

Expression Profile