RNA id: XM_026921185.2


Basic Information

Item Value
RNA id XM_026921185.2
length 1651
RNA type mRNA
GC content 0.42
exon number 9
gene id dnase1l1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10999100 ~ 11004596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGGAAGGGTGGATCCTCTTTCACTGAACAACACTACTGCTTAAAAAAATCCGCTTCTCCGGAAGTCAAACTTTCCTCACAACTCCCCAAAAAGCGTTGAAACCCCTTCAGCTCTCAGgttcacTATGATTCTTCCTCAATCCCTGCTCTTTTTAGTCTACCTCTCTGGACCGCTGGCCTGCCATGCATTCAAGATTTGTGCCTTCAACGTTCAGAGTTTTGGAGGCTCGAAAGCAACAGATGGCACAGTTTTGCACATCCTAATACGGATTGTGTCACGCTGTGATGTGTGTTTGCTTCAAGAAGTCAGAGATCAGAAGAAAACAGCCATACCACGTCTGATTAATAGACTCAATAAttatgaAAGGGATCACCAGTATGACTATGTGTCCAGTGGACGTCTTGGCAGGACACAAACCTATCAAGAGCAATATGTTTTTGTATTCAGGATTGACTCAGTCAGGCTAATAGACCAGTATCAGTACCCAGACACACAGAAAGGAGATGAGGATGCTTTTGCCAGGGAGCCTTTTGTAGTGCGCTTCCGAGCACCTAAAACAGTGATTGGCGAGTTTGTTCTGatcccaatgcacacctctcCTTCTAATGCCACCAAAGAGATTGATGAACTCTATGATGTCTTTGAGGATGTTAGACAGAGGTGGAAGACAGAGGACATAATGTTCCTTGGTGACTTCAATGCAGCTTGTGGATATGTCGCcaagaaaaacaggaagaacaTAAGACTCTACTCCAACATTTTCAGCTGGCTGATAGATGACAAACAGGACACTACAGTAAGAGGGACCACTGACTGTGCATATGACAGGATAGTGGTACACGGAGATTCCTTTCTCAGAGCTATAGTGCCATTCTCAGCACAACCATTTAATTTTGCCAGTGAATACCGGATCAAGGAGGAAGAGGCTTTACGTGTGAGTGACCACTATCCTGTAGAGGTAGACCTGAAGACCAAGTCAGGAAGTGAGCAGGGAAGCATGATCTTTTTCCAAATAACTCTTGGCCTTCCCTTGCTACTCCAACTGACATGACACCAGTGTGAAAGCGGAGACtttttcagtcagtcagtttgaGAGAAGATAACGATATGCACTGATGCTACTTAAACATCATCTAAGCCAAAGCTGCATAAGAATGTACTGGGTTTCTTGGAAATAATGTGATACACATTTTCATGCTCTTTAAATCAAGGAGATTGTAAGTATTAAAAAAGTTTATCAACTACTGAAAAGCacattgctttatttttaatctgttatcatgctggaatttCATCGGACACAGTCCTAGTTCTTGTTGGTAGGAAGTACATTTAAGGTAACTGGCTGCTAATGAATCAGCTCTTTTGCCACTTTACTGGTGACTATCtggtttttgtttgtaaatggCACATTCAAAGTctactggacaaaaaaaaaaaaagttgaatccTCCAACAGCAATATCAAACTGTACAATGTCAGTAGGTTGCATGCCTGAATGAATCTAACCCATTTGTCAGGTGCTGAGGTCACCTTTTGTTGTTCATGTCAAGGCAAAACACAATGCTGACATATGGCATGGGGTCAAATCTGTGctggattatttaaaaaaaaaaaaaaaattggtggcGTCCTTATCTGACACAA

Function

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299463 lncRNA downstream 1664 10994816 ~ 10997436 (-) True G252967
TU299464 lncRNA downstream 1664 10994816 ~ 10997436 (-) False G252967
TU299430 lncRNA downstream 86635 10904886 ~ 10912465 (-) True G252944
TU299404 lncRNA downstream 132404 10866236 ~ 10866696 (-) True G252921
TU299403 lncRNA downstream 133400 10865360 ~ 10865700 (-) True G252920
TU299468 lncRNA upstream 2186 11005952 ~ 11006617 (-) True G252969
TU299471 lncRNA upstream 6058 11009824 ~ 11015630 (-) True LOC113530950
TU299474 lncRNA upstream 18193 11021959 ~ 11023025 (-) False abhd6b
XR_003403192.2 lncRNA upstream 34056 11037822 ~ 11038968 (-) True LOC113530895
XR_003403161.2 lncRNA upstream 85299 11089065 ~ 11091286 (-) False LOC113530615
XM_034311886.1 mRNA downstream 25325 10942875 ~ 10973775 (-) True flna
XM_034311887.1 mRNA downstream 25326 10942875 ~ 10973774 (-) False flna
XM_026921244.2 mRNA downstream 57848 10932106 ~ 10941252 (-) True emd
XM_034311977.1 mRNA downstream 142138 10853017 ~ 10856962 (-) False cfap126
XM_026920887.2 mRNA downstream 142138 10853017 ~ 10856962 (-) True cfap126
XM_034312181.1 mRNA upstream 5697 11009463 ~ 11015666 (-) False LOC113530950
XM_034312180.1 mRNA upstream 10192 11013958 ~ 11015666 (-) False LOC113530950
XM_026921370.2 mRNA upstream 10192 11013958 ~ 11015663 (-) False LOC113530950
XM_026920311.2 mRNA upstream 13050 11016816 ~ 11019715 (-) False kctd6b
XM_026920310.2 mRNA upstream 13050 11016816 ~ 11019715 (-) True kctd6b
TU299234 other downstream 360382 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 529566 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 969107 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 2420500 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 3489353 7476274 ~ 7509747 (-) False ctnnbip1
TU299470 other upstream 10198 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 255277 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 269564 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 452255 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 452255 11456021 ~ 11462706 (-) True LOC113530309

Expression Profile