RNA id: XM_026921215.2


Basic Information

Item Value
RNA id XM_026921215.2
length 3463
RNA type mRNA
GC content 0.48
exon number 15
gene id wu:fy63c09
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21259533 ~ 21273011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCTGGTTTgttttacatgcacacacacaagaacttCCTGTTGACGTCATGACGTGGGAGCGTACCGAAACGCTCGAGCGATAGTTCTGTTGGAACCTGTTGTAGTTTCAGATAATGAACTACATTGTTTTATTCGGAACGGAGCTTTCGTCTGGTCTTTCCTCTccataaaggtttttttttttaattagcggTTGAATTGCTTTGTATTAGGATTAAACGTCAGAGAGAAGCCCTgctttctctcgctctttcaCCCCGACTGTTTCCACAGGACTATCTTGTACTCAGGACAGGAGAAATGCTCTTCTTGTAGACTAAGCTCTTGTCTTTTTTGTCGAAAGAAGAGATATCTTGTTATCTGCTCTGGATATGGCTGAAGCTCGAGtggaggatgaagaggaaaGTTTGAGAGAGGCGCGTGAGGCCGGCGGCGCGAGGCGAAACCCGCGAGCTTCAGagcgAGCAGATAGGAACAAGCCTGAACAACGCCAGTCCAGcACTCAAGGCGCACTCTCGTCGATCAGAGCTGTGATAAAAAGGACGTCCACCAGAACAGCTGCTCCGGCCGAccaaaacagagagagacgACGTCCAGAGATCACCATCCTTGCAGCTGAACCCCTGTCCACAAACTCTTGGTTCCCAGGAGCCTCTGGGGCATTTCCCCCTGCACCGCCCCCTGCTCAGCCATCTTGGACTGGTTCTCTTACAGTACAGCTTCCCCCACCTTCATATGAACAGGTGATTAGAGAAAAAAGGCAGGAGCAGAATACCCAATCCTCtgtttcttcctcctcctcatcacccTCCTCCTCATTATCATCAGCCTCTTCATCCTCCGCTCCTCGTCATACTGCCACCATCGCCACACAGACCGATCCAGAGACTTCTGAGACACAGAGCTGTTCCAGACCCTCGATGCGCCGGCCCCCAAAACCACCGCGCCCATCCCTCCCACTCATTCCTAAACCTGCCGAGCCagtacctgcacacacacacactttgattgAACTGGGTGAGCCTGATCCACCctgttccacacacactccaacacacccTCCTAGTGGCGAACAATGTGGAGTTCAGACTGACTTCACTCATGCACTGGAACCCTTGACTCCCATCTCTCCTGACTCCTCCCACATTACCCATAATTCTCAGTCACAGGCCCCAGTGAAACAGGAGGTTTCAGCACGCCCTAAGCCACGCCCTCGCTCCAAAGCTTTAGTGCAGTCGGTGATTAAAGAAGAGGTTCAGGATCAACCAATAACAAGAGAGGTCAAAGTTCAGACCTTGGTGCGCCTTAAAGACGATGGCACTGAGAGTGTTTTTGCCGGTTTTACTGACACTTCTTTAGACATTGCATCTAATAAGTATCTACAGGACCTGTTAGATGTCTTTGGTTGTGATAAACAAGACTTCGAAAGTGACCAACATGATGAAAATGACCAAAGTGAGAAGAGCAGTGAAGAGGAAAGTGTCACTTTCGAAAGCTCTTTGGTTTCCACGGTTGCGTCTGAACCTTTGGAAACCATAAAAAGACCAGAACCACGACCAAGAACCCAGAATCCCAAACCACCCATCGCCACAAAACCATGTGACCCAACACAGAGTGTGGAGGAGACCAAAATTTCTTCAGAAGAACAAAATAAGCCATTAGTTCATCCAGTTCCTGCTCCCAGGCCACTGGTGAAAAAATCATCCGTGTCCCAGCAGCAGGGTTCCTCAGAGGAGAAAACCGAGCTCTGTCGACTCCGTCCACCTCCCAGACCTCCGTTAGCTGCACGCATGTCTGGATCTCCCATCCAGGAAGCTCAGCCTGCAGAAGTGCCCTTTAACCCCTCAGGAAAGAGAGGTTCAGAAGATCAGGACTCATCTGTTGCTGCCTCTGGGAAGCCTGTAGCAATCACATCCTCTAGCAGAGGCAGGGGAAAATGTCCAGCTAAGCCCCCGTTCCAGAGGAGGCCTCCACCCCcagcacacactcctgcacacactcctgcacacactcCTGCAAACACTCCTGCAAACACTCCTGCAAACACTCCTGTACAGgatgCTGTCAGTGCTGTAAACGTTAACAAATCTGGCCCATCACTACCACATCAagcCAGTGAGGGTAGGCTGCTTCCTCTGCGTCCTCCTCCAGTCAAGTTGAGCAAATCAGCAAGTTGCTCCCTGACTCCTGCTACAACCAATCAGCTCTCGGGTTACAGGGGAGTCAAACGAGGACCACCACTGCCACCGAGACCAAAGCCTGGGCATCCTCTCTACAGAGAGTACACAagcAAAATCCCTCAAGGAAACACTAAAGTAAATCCCCCTAGCAGTGATCCTGAAGAATCCTACCTTCAGAAAGAGAAGCTTCTTCTTGTTCTTGATGACAAGGCGGGACCAACAGAGACACCAGGAGGTGTGAAAGGTCAACATCAGGACTCGGTGTCAGAAGAACCCGTCTCTCAGAAGAGTCAGGAGCTGCAGAAAGAGCCACAGACGGAGGAGCAGCAGCCTGAGACAAACACCAGTGTCAGGTATAGAGCCCACTTTGCGTTTGATGGCGAAGACGGTGAGCTGACACTATGTGACGGTGATGTCATAACGTTAATAGAATATGTAAATGAAGAGTGGGGGCGTGGCAGCCTTAATGGACGCACAGGGCTCTTCCCTTTGAATTTTGTCCAGCTTGTTCAGGAAAATCCAGTAAAGAAATCGACACCTGAGTCACCTGcatctgcagtgtgtgtaggagaagGGCAGACAGGCCGAGCTCTGTATGATTTCACTCCTGAGTCTGAAGAAGAACTCTGTctcaagGTTGGGGATGTGGTGTCCTCCCTGGAGGAGGTGGATGAGGAATGGTTTGTAGGGGAATTCGCCGGCCGACGTGGCATCGTCCCGAAAAATTACATCCAGGTGCTCTAAAACACGATCAAGATGGATAGAGCGAAAAGTGTTTACATGCGGAAAGTAAAAAGTGTCGTCATTTGTGTGTAATCCAATGGCCTTGGTCTCCTACTTAAATGAACTCCAACACAATCAAATGTACCACTTTCATAAACACATTACTCACTGATTGGTTTGTCTCTTAATGTTTTCATCCTCTAGACCTGTTCTGTTCTGCTCTGTTTATCCGTTCACTGTCATCCCAAAGCCAAATGATGATACTGTAGTGTTGTGTTGGAGTTAATCTAACTGGACTGTGAAGAGGGCCTGACATTTGACAGACTAACGTCATTAGATTTTGAAAAgcttttagttttattaatgttttgaattttttttttttttgtaatttgcaCAGGATACTTTTTGATGTAGGTTACACCTACTGTACTAATTGACACTGTGAATAGCGATCTCCCACTGAAACTCCTTTATAGTCTGTGAGATGGCTTAATCTGTGGGGAAATGATGTCAAGGAGACTTAACCCAAAATAAATCCAGATGAATTATTATAAA

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019905 syntaxin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306206 lncRNA downstream 18473 21238036 ~ 21241060 (-) True G258626
TU306176 lncRNA downstream 91935 21153906 ~ 21167598 (-) True G258596
TU305999 lncRNA downstream 283272 20973397 ~ 20976261 (-) True camk2n1b
TU305993 lncRNA downstream 305681 20953626 ~ 20953852 (-) True G258437
TU305980 lncRNA downstream 356776 20901278 ~ 20902757 (-) True G258427
TU306265 lncRNA upstream 81428 21354439 ~ 21354687 (-) True trnaq-uug_7
TU306289 lncRNA upstream 101887 21374898 ~ 21375103 (-) True G258700
TU306366 lncRNA upstream 241636 21514647 ~ 21555460 (-) True G258771
XR_004579674.1 lncRNA upstream 310704 21583715 ~ 21586639 (-) True LOC117599221
XR_004579673.1 lncRNA upstream 310704 21583715 ~ 21585880 (-) False LOC117599221
XM_026921016.2 mRNA downstream 40620 21212913 ~ 21218913 (-) True LOC113530739
XM_026920602.2 mRNA downstream 68505 21189381 ~ 21191028 (-) True LOC113530510
XM_026920601.2 mRNA downstream 75424 21181047 ~ 21184109 (-) True LOC113530508
XM_034311818.1 mRNA downstream 80478 21176544 ~ 21179055 (-) True LOC117599250
XM_034311567.1 mRNA downstream 127462 21114967 ~ 21132071 (-) True ppp1r14c
XM_026921046.2 mRNA upstream 14603 21287614 ~ 21294773 (-) True LOC113530756
XM_026920132.2 mRNA upstream 24045 21297056 ~ 21304628 (-) True ednrab
XM_034311891.1 mRNA upstream 199707 21472718 ~ 21474842 (-) True LOC117599258
XM_034312021.1 mRNA upstream 221405 21494416 ~ 21496055 (-) True LOC117599277
XM_026920092.2 mRNA upstream 355121 21628132 ~ 21671352 (-) True LOC113530264
TU306159 other downstream 89835 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 391575 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 987626 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1139584 20110463 ~ 20119949 (-) False mlh3
XR_003403208.1 other downstream 1155622 20103774 ~ 20103911 (-) True LOC113530994
trnaq-uug_7 other upstream 81615 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 656164 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1173019 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1925571 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 2490663 23763674 ~ 23764163 (-) True G260310

Expression Profile