RNA id: XM_034312065.1


Basic Information

Item Value
RNA id XM_034312065.1
length 4458
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC113530861
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18193197 ~ 18240912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTATAACAAATGTCTAGCTGCCATCATCAAGTCCAGCCGAGGCGGGAGGgaggagttttttttataatgttcaGTTTGTTCTCGGGATCGATGTTCACGGGCATCGCCTCACCGTGTCTGAGCCAAGCGCGATATTCTCTTACACACGGACGCTTTCTTTCTGTCCTCGTCACTCGTTTCGCTCACTAACCGAATCCGGCGTTTTGACAGGCGCTCGTCCTTTCGGCTTTTGAaagggggagaaagagaaacggaaagaaaaagaagaaagggggggaagagaaaaaaaagaaagaagaagaagaaaaaaaaaaagcggtcCGCCATAGATCCGAGAAGGCGAAAGAGAGACACCCCGTCCTGACACCTGATTTGACAAGACAGCGTCTCTGATACTGGGATTCTACTAGAgcagagcagaggagaggagaggagagaggagaggagtgcAGTGCGTTTAGCGCCTTACAACATAACAGTGGCTCTTCTGTtcgtttgtttgtgtgtttgtttggttttttcttcttttacgGACTATTTGAGAAACCTGAAGTCGGCACCTATACGAATTTGAAGTACGAGTTGAGAAAATGCCGAGGAGGAAGCAGCAGGCGCCGAGGCGGGCTGCGGtgTATGAGccagatgatgatgttggtgccCCCGAACCAGTGGCAGAAGACGAGGGGGGAAATGACATGCAGAATGAAGAAGAGGGGTCTGAAAAGCCCAGCACTAAGATTCCTGAGGACAAGGAAACCGACAACAAGAGCAGCTACAGCTTCCAGAATTCCCCTGTCAGTGTCTTGTCCAACCAGGAGGTCGAACTAGAGTCCCGTCTGAGTGATGGCAGCGACAGACTATCTGACTTCAAGGCCTCTTCACCACCAGAGAGCCTGAGGGACAATGAGAATCATGGTTCAAAACCGAAAGACGAGATGTACAGCAGCCTTGAGAAAATGAGGGCAACTTATGTCAACTTCCTCTCAGACTCCTACTGGACAAATATTGGACTAGACCTTAAGGTTGGTAACACCAGCAGCAAGCCAAACTGCGACAGCTCCAATGCAAGCACTAAGCGTGAGTTTGACTGGCATCAGGATGCACTGTCCAAAACCTTACAGCAAACACTGTCCCCAAAACCTGTCTCAAAACCCAACCTGTTCAGCTCAGTGCACCTGTACAGGCAAAGCAGCAAAGCATGTGGTACAGTCTTCACAGGGGCCAGTCGCTTCCGTTGCAAAGACTGCAGTGCAGCATATGACACCTTGGTAGAATTGACAGTGCATATGAACAAGAGCGGTCACTACCAAGATGATAACCACAGCAGACAAGGAATTGCCTCCACTTCATCTTCCAAAAGTCGGAAGAGGAACCTACAAGACATGGAAGGCAAGGAGGATGCCCAGAAAGTGCTGAAATGCATGTTTTGTGGCCATTCTTTTGACTCTCTCCAAGACCTAAGTGTTCACATGATAAAAACTAAACATTACCAGAAAGTGCCTTTGAAAGAACCTATTCCAGTAATCACTCCTAAATTAGTTCCACCAGCAAAGAAGCGTGCCTTTGAAGCTACAAGGCCTTGTTCCCCTGACTCCACCACTGGTACTATAGGCTACAGTGAAGCCCAAAGGTCATCTGGTCTTACAAATGCTCCAAACAACAGATATGGCTATCAGAATGGTGCTAGCTACACATGGCAGTTTGAAACATGCAAATCTCAGATTCTAAAGTGCATGGAATGTGGAAGTTCACATGATACTCTTCAACAGCTGACCACTCATATGATGGTCACTGGCCATTTCATCAAAGTGACAAATTCAGCATCCAAGAAGGGTAAACAGTTAACTCTTGATCCATTAGCAATAGAGAAGATGCAGACACTAGTGGAACCCACTGTTAATGATTCTGAGGGACAAAAGGCCTCCCCAAAAAGTCCTGCCTCTGGGGATTCTCAGAAATCTTCCCCAAAGGAAAAGAGATCTGAccaagaagaagagagaaataaagatgaCCAGCAAGATGGGGCAGATCAAAAGTGTACTGATGCTAGTTTTAAATATCCATACCTACGAGAGGAGGACCTGGAACAAGGAGCTAGTGGAGGGGGTGATATACTGAAATCTTTAGCCAACACAGTGGCCACAGCAATTAATAAGGCTCAGACGGGGACACCCAGCTGGAGTGCTTACCCCAGCATACATGCAGCTTACCAGCTATCAGGCGTAATTAAGAGCGCCCCTCTTTCTGCCTCTCCCCCCATACAGGTTAAACAGAGTCACAGCCACAGATTGAGGCTCATTGCCCCCAAAGGAAAGTTTTATCAGGGACTTCGAGGACACGAGAGTTTCCAGGGACATCACAGTCCGGACATCAAAAAGGAGAGGGGTGGTGCATCCGATGACAAAGAGAGCCAGAACAGCAAGTTTGATCTGGCAGAGAATGATGACAGTGATTGTCAGGATgattcctcttcctcttcaaaGCTGGATGCAGACTGGGTAAGTGAAGGGAATGACACGATCAAAGGGAAGTTGAGCCCAGCTTTCTCTGACACAGCCAACCATTCACCAAGCCCTCCTGCCAGCAATGGGCACAGCAGTTCCTCAGACCTTGTCAGCGACTCTCAGGAAGTCCCTACTATAAACCCTTTAAGTGCACTACAGTCTGTCCTGAACAATCATTTGGGGAAGGCAAATAAGCCAAGGCAAGAGGGGGTTTTGTCTCAACGCATCCAACCTATATTCTCAGAACTAAGCCGAGGCCTTGAGAAACCAGGCTCAATCCTCACATCCTCTGCTGTCATCAGGGCCAACAGCAACTTCATGTTCACAAATAATGACCAGCCAATAGacttaacaaaaaacaaacataaactgAGTTCCTCTGTCTCGTCGCAGTCCTCCACGCCTATGCCTCAGAAACATGCACTGTCTGACATTGCTGACATGGTAAAGGTTCTTCCCAAAGCCACAACGCCAAAGCCCTCAATACCATCTAGAGTGCCTGCAATGAAACTGGAGTCAGACGTGAGGCGGTTTGAAGATGTATCCAGTGAGGTGTATTCTGTCCACAAACGTAAAGGCAGGCAATCAAACTGGAACCCTCAGCACTTGCTCATTCTTCAAGCCCAGTTTGCTTCCAGTCTCTTTCAGACCTCCGAGGGCAAGTATCTTCTCTCTGATCTTGGTCCTCAGGAACGGATGCACATCTCCAAGTTTACTGGACTCTCTATGACTACCATCAGCCACTGGCTAGCCAATGTTAAATACCAACTTAGGAAAACAGGTGGGACCaaatttttaaagaacatgGACACAGGCCACCCGGTCTTCTACTGCAACGACTGCGCGTCCCAGTTTAGAATGCCGTCTGCTTTCATTTCCCATCTTGAATCCCATCTTGGTTTTCAGATCAAAGACATGAGCAAACTGCCAGTTGAGCACCAGACAAAGGTAGCAGAGCCTGAACTGGCGAAAACTTTCAGTGTTAGAGTGACAGAAGCACTGGTGACAGAGGAAGACATTGACTCTAAATTCAAATGCAAGCTTTGTAGTCGGACATTTGCCAGCAACCATGCAGTCAAACTTCACTTGAGTAAAACCCACAGCAAATCTCCAGAGAATCATTCACAATTTGTTGAGATGGACAAAGAGTAGCCTGGTTGGTTTTTATTATATGTAGTTTTGTTGTTAATAACTGTAATTGCtctgcttttatatatataaaaaataacgggtgaaattatttttttcatgttacatGTAGCATTAAGTAGTATgctcataaatttaaaatgaaacatttcatcatgttaaagaaaaatggacACACTGGCTGGATTAGAAGGAAGTGTAAGTAAATGCATTACAGAAGATTCTGAAATGAATCCATTGACATAAGTCTTTGCACTCTGCTCAATTGCATCACCAGTAATGAACTGTATTATTGCTTGAAACATAACTGCAGATGTTTGCATGCGGTAGCTCTGGCTATGACTATTTATTTGTATGATATGGCAAGTTTTAATTGTAATACTTTTAACAGCAAATTGATTGATGCATTAACTGTAAGCTCTGATGATGCACCTGAATGGACAAATGTTCAAACAGGTAGCCAAAcacacatttccaaaaaaataaataaataaaaatgcaaataaaaaataataataaatgaaaaaaagaaaaaagaaagaaaaataaatgtacagtacattattctgtaaaatatatgtGTTGCAATGATAGAACAGACAAGcactttaataaatgtttaatcacCAGTTTAGGCTCAGATTCGGTATGTGAGTTAACAGATTTAGACAACTTTGACATAAAGATGTCTCACATCAATGTATATATAGCACtgcagaaaaatgtgtctcATCAAAAGGAGGATAGTGAGACAGAACATACTGCACCTTTTATAccagtaaaaataaatcattaacatTTTTC

Function

GO:

id name namespace
GO:0048701 embryonic cranial skeleton morphogenesis biological_process

KEGG:

id description
K09236 TSHZ; teashirt

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303952 lncRNA upstream 112865 18078167 ~ 18080332 (+) True G256851
TU303953 lncRNA upstream 115385 18076948 ~ 18077812 (+) True G256852
TU303870 lncRNA upstream 248098 17944895 ~ 17945099 (+) True G256772
TU303869 lncRNA upstream 249842 17943151 ~ 17943355 (+) True G256771
TU303824 lncRNA upstream 314711 17877613 ~ 17878486 (+) True G256726
TU304013 lncRNA downstream 81157 18322069 ~ 18324070 (+) False G256899
TU304014 lncRNA downstream 85320 18326232 ~ 18328256 (+) True G256899
TU304259 lncRNA downstream 379337 18620249 ~ 18621066 (+) False G257068
TU304260 lncRNA downstream 379337 18620249 ~ 18621175 (+) False G257068
TU304261 lncRNA downstream 379337 18620249 ~ 18621305 (+) True G257068
XM_026920242.2 mRNA upstream 446668 17739271 ~ 17746529 (+) True si:ch211-66i15.4
XM_034312049.1 mRNA upstream 446668 17739271 ~ 17746529 (+) False si:ch211-66i15.4
XM_034311767.1 mRNA upstream 516893 17649314 ~ 17676304 (+) True si:dkey-261h17.1
XM_026920653.2 mRNA upstream 516893 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XM_034311768.1 mRNA upstream 516893 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XM_026920971.2 mRNA downstream 105863 18346775 ~ 18351473 (+) True pfdn4
XM_026920076.2 mRNA downstream 249569 18490481 ~ 18497402 (+) True cd40
XM_026920100.2 mRNA downstream 370241 18611153 ~ 18620055 (+) False casp9
XM_026920099.2 mRNA downstream 370243 18611155 ~ 18620055 (+) True casp9
XM_026920103.2 mRNA downstream 370243 18611155 ~ 18620055 (+) False casp9
XR_004579712.1 other upstream 1072256 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 1684817 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 1796985 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 1798197 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 1963791 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 638656 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 792005 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 1237390 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 2149897 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 2269332 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile