RNA id: XM_026921241.2


Basic Information

Item Value
RNA id XM_026921241.2
length 3087
RNA type mRNA
GC content 0.46
exon number 19
gene id trpc4apb
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11444394 ~ 11453985 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGTAATCTGACTGTTTGTGTCATTCAGCAAAGGCTttattgaagaaaaagaaaaacattgcgACGTCAAAGGAAAAACAATGGCGGCTAACGGGCAGCAGTCGTCTCGAACTCAAACAAGACGGAGAAATCGAAGCAAAAACATATTGCATAAGATCAAATATGGGCAGATAACAGGCTTGGGGATGACCCATGGCACACAGATCCCAGTGGGTCTTCTTGAGGAGAGAGATAAGAAAGCTCGATGGCAGGGAATACCACTGCTGCTGAGGAAACTTCACAACAGCAGCCACATAAACAGTGATCTTTCCAAAAGCCACAATGTGGTTAAGGAGCTGTCGTCACTGCTGTCCATGGAGGCGATGTCCTTTGtgacagaagacagaaagacaccGCAGGAGTCTGTGTCTCCTAACACTTACACCTTTGACCTTTTTGGAGGAGTTGATTTGTTTATAGAGATTTTGATGCGGCCCACTCTCTCAATACAGGGGAATGTTCCCATTATGGGTGATGATCTCATCAAGGACTGTTTAAGTGTTCTTTACAACTGCTGTATTTGTACAGAGGGTGTTACAAAAAGTCTTGCAGCAAGGGACGactttgtcatgtttcttttcactttaaTGTCAAACAAAAAGACTTTCCTACAAACTGCCACACTTATAGAAGACATAATGGGGGTCAGAAAGGAGGTGATCCGACTGGAGGATATTCCCAACCTGGGCAGTCTGGTGCAGAGCTTTAACCAGCAGCAGCTGGCCAACTTCTGCCGTATCCTGTCTGTCACTATATCGGAGCCGGATGCAGGCATGGATGACAAACACACCCTTTTGGCCCGCAACGCTCAACAGAAGATAACTGCATCTCCGTCACGTGCAGAGAGCAACCAAGTTGCTCTACTAAATATCCCGGGCTTCATTGAGCGACTGTGCAAACTGGCTACACGGAAGGTGTCGGAAGCTTCAGGCACGGCTGCACTgctgcaggagctggaggactGGCACAGCTGGCTGGACAACGCCCTGGTGCTGGATGCTCTCATGCAGATGGCCATCGAGGAGGCTGAGCAGAGCAGCACAGAGTCATCTGATGAAGGCTCACTTTCATCAAGTCCTCTTAGGCACACGTTGCCTCAGTCCATGAAGATTGTGCATGAGATCATGTACAAAGTGGAGGTTCTCTACGTGCTGTGTGTACTGCTCATGGGCCGACAGAGAAATCAGgtTCACAGGATGCTAGCAGAGTTCCGATTGATTCCTGGCCTGAACAACTTGTTTGACAAACTGATCTGGAGGAGACATCCATCTAGTCATGTCTTACACAGACAGAACCAGAATTGTGACTGCAGTCCAGAGATCTCATTCAAGATCCAGTTCCTCAGGCTGCTACAGAGCTTCAGTGACCACCACGAGAACAAGTATCTTCTCCTGAATGGGCAGGAGCTAAATGAGCTCAGTGCCATCTCTCTGAAAGCAAATATTCCTGAAGTGGAAGCGTTGGTCAACACAGACAGGAATCTAGCATGTGATGGGAAAAAGGGCCTCCTGACACGACTGATTTCAGTCATGAAGAAAGAGCCAGTCGATTCATCGTTCAGGTTCTGGCAGGCTAGAGCAGTAGAGAGTTTTCTAAGAGGAGCCACATCCTATGCAGACCAGATGTTCCTGCTGAAAAGGGGCTTGTTGGAACACATTCTCTTCTGCATCATTGACAGTGGCTGTAAATCACGTGATGTCCTTCAGAGCTATTTTGATCTGCTAGGTGAACTCATGAAGTTCAACATTGACGCCTTCAAGAGATTTAACAAATATGTGAACACAGAAGAAAAGTTTGAGACGTTTCTGAACCAGATCAACAGCTCACTCGTGGACTCCAACATGCTGGTACGCTGCATTGTTCTGTCCCTGGACCGCTTTGAAGGACAGACGGAGGACATGAAAGTGATAGAGGTGCTGTCAGAGTGCCGTCTGTTGTCCTACATGGCTCAAGTCGAGAATAGACTCTCCTTCCTCTTCAGGCTGATCAACATCATCAATGTGCAGACTCTAACTCAGGAGAATGTGAGCTGCCTGAACACAAGTTTGGTAGTGCTGATGCTGGCACGGTGGCGGGGCAAGCTGCCATTCTACCTAAGAGCTCTTAAGGAGAAGGAGTATGCTGAGAAATACCCAGGCTGCTTGCTCAACAACTTCCACCACCTACTGCGCTTCTGGCAACATCACTACCTCAACAAAGACAAGGACAGTACCTGTTTGGAGAATAGTTCCTGTATTCCTTTCACCTACTGGAAGGAGACGGTGACGGTGTTGCTGAGTTCAGATAGGAGCTCCCTCTGTGCCATAGCCACCTACATAGATGAGGCCTACAGGGATCTGGACAGAGACTTTCTGGAGATGTGATCATGGTGACTGTGTGGCTATGGAAGCAAAAGAAGGTTTTTAATGAGCTGCTGTCGCGCACTTCTATAGAGATGCATGCAGGGCTCATTAAACAGGACTGCTATACTGGGTGTatgtatgagagagagtgaaagagtgagtgagtgtgcttGGGAAAGTGTGGAATGGATGTGCATATGTTTTTACAAGTGTGTTTGGGTGTACTGCTTCTAATGAACCAGTGATTCTAAAtcttaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctagcacGCATGTGTGTTGCAGTAGACTCTGGATGTTGTTGTCCAGGTCTAAAGAGGCACACTTATTTCAGCTGTAGTCTAAGGGCTGTCTCTCCTTTTTAGATATATGGGAATGTTGTAACCTGaataaaaaacatggaaatgccCGTGAAAAGAGCCTATTtcatcagcaaaaaaaattacaaaattcaGGGGCAATGCAATTTAATCTTGGTGGTTTGCTTCGTTTAAATACTGCCTCTATATTTATGGATAATGTGTAGCTCAGTCTTGAACTCAAATTCTAACTTTTCAGCCCAATGACAGGACagtaactgaaaataaagatgTAACATGTTTTATCACAACTATGTCTTATGATTACATAAACATTATTGTTCCCAAA

Function

GO: NA

KEGG:

id description
K11796 TRPC4AP; Trpc4-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299761 lncRNA upstream 29760 11392434 ~ 11414634 (+) False wu:fa11c10
TU299755 lncRNA upstream 67774 11372995 ~ 11376620 (+) True G253212
TU299753 lncRNA upstream 72042 11370703 ~ 11372352 (+) True G253210
TU299681 lncRNA upstream 197532 11245898 ~ 11246862 (+) True G253151
TU299682 lncRNA upstream 198922 11244761 ~ 11245472 (+) True G253152
TU299791 lncRNA downstream 7729 11461714 ~ 11462757 (+) True G253248
TU299793 lncRNA downstream 16066 11470051 ~ 11479369 (+) False zgc:103759
TU299787 lncRNA downstream 52473 11506458 ~ 11507627 (+) False arhgap4b
TU299813 lncRNA downstream 140519 11594504 ~ 11633295 (+) False hsd17b10
TU299869 lncRNA downstream 275055 11729040 ~ 11729292 (+) True G253301
XM_026920082.2 mRNA upstream 6749 11429838 ~ 11437645 (+) True nsfl1c
XM_026921394.2 mRNA upstream 34770 11392610 ~ 11409624 (+) True wu:fa11c10
XM_026921393.2 mRNA upstream 34770 11400036 ~ 11409624 (+) False wu:fa11c10
XM_026920982.2 mRNA upstream 74670 11344353 ~ 11369724 (+) True bcl2l1
XM_026921373.2 mRNA downstream 19310 11473295 ~ 11479376 (+) True zgc:103759
XM_026920331.2 mRNA downstream 29434 11483419 ~ 11507750 (+) False arhgap4b
XM_026920333.2 mRNA downstream 29434 11483419 ~ 11503952 (+) False arhgap4b
XM_026920330.2 mRNA downstream 29435 11483420 ~ 11507750 (+) True arhgap4b
XM_026920332.2 mRNA downstream 29435 11483420 ~ 11507750 (+) False arhgap4b
XR_003403199.2 other upstream 28945 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 28945 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 176711 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 184476 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 207032 11231429 ~ 11237362 (+) True oard1
TU299947 other downstream 438165 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 659637 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 687502 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 912758 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 1383066 12837051 ~ 12850995 (+) False rbbp8l

Expression Profile