RNA id: XM_026921251.2


Basic Information

Item Value
RNA id XM_026921251.2
length 4595
RNA type mRNA
GC content 0.46
exon number 3
gene id fbxo30b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22570446 ~ 22579027 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGCCCACAGCGactgaactattttttttttttggagaagaTTGAAGGATAGGGCACAGGacgagtgatgatgatgatggttttgGTTAAAAAACAAAGTTTTTCGTTTTACAGTGTCTGATTTGTAGTGAACATATTTCGAGGAACAGTGCGGAACAGCCGGGCTAGCTGACACTTCTGGACATTTTATACCTGAGGCTTGGGCTTCAGCCAACATCCCTGCCTTGGCCTTCTTGAAAATGGAAGAGCTCCACACTCACTGTGTGTCATGTGTGAGCCGGCGGTGCATGGTCAAGCCTGAGCCTGGCACTTCCTGTGACCTTCTTGTCTGCCCGCTGGTTTGCGGCGCTGTTTTTCACAGCTGTAAGGTAGACGAACATCGTTTGCTGTGCCCACTTGAGAGGGTACCATGCCTCAACCACAGCATCGGCTGCCCTTTTATGCTGGCCCGAGGCAAGATGGCGGAGCATCTTGAGGTGTGTCCGGCTGGCGTGGTATGTTGCACCATGGAGTGGAACCGGTGGCCGGTGAATGACGAGGACTACCGCTCCTACGAGAGGTTGAGTCGGGATGCAGATGAGGAAGAACAGCTAGACATGGCTCTTGCCTTGCAGGACCAGCGCACAATGCTGGCCTCACTAAAACTTGTATCTCTCGCACCCACAAATTGTCCTGACAGAAAACCGCAGCTTGCAGAGACACGTGAAAAGCCTAGTGTAATTGCAGATGTTATGGTTCCCACCATGACACTTGAGGAAGACATGGATGGGGCATCAGTGTTGTGTTGCTCAAAAGACATAATCAGCAATGGGATTAACGGATTGAATGAGGAGCATTATGGTGAGCTTTACCAAACCACGGTAGAGACGACCAAAAGTCTGTCTGCTGCTCTGAATGTTCTGATACACCTCAATGCCTCGGACACGCAGTGTCAAACAACGAGTGTTTCAGCAGCGCAACCAGACTTAAATGGAGAGTTACATGAAGTGTTACTTATGAAAGAAGACACCGGGTCCTACTGTGATAAAATAGCCAGTGGGGTTAGTGGTTTAAATGAGGAGTTGCAGCCTCAACGACACCAAACCTTGATGGAATTGGGGAGAAACTTGGCCTCTGCTCTTGGTGCGCTTGGAGATGCTGTCAAAGGCTCTGAGCCAAGCTGTATATTCAGCAAGACCAATAGTGCAATCGATCAGCCAGATACTGTTgagtgtgcagacattgaaaTGAAGGATAGTACCTCTGAAAATGAGGTTGAGTTTGGGGCAGTTGGTGGAATTGATGATGAGGATTCAGACAAACTTCCTGGCCACATTAGTCAAGAACATTGTCAAGAATCTTCACTCAGACTAGGAGATGAGGATGAGAAAAGTTTGTGTAACAATTGTCACAATGCTGTATCATCTAGAAAATCACAGGACCATTCTATGGAACCAGCTGAAATAGATGAGTGTTCAGAGCATGGTGATTCTTGGGAGTTTGTTGGTCCATTAATTCCGCACAGACCAGAATTGAGACATGATCTAGCCACTGTTGTAATGCAGGAGGCATCTGGATCCCAGGCTCCACTCTTACAGCCGCCTGTGCATGCCCAGGCTCTGGTTGTTCCCAGGGACAGTCTGCTGCCTTCCATAGCATTAGACTTTGAGGATAAGGCTTTTGAGAGAAAACTCCAAAACCTTCAGTTGCTCCGCAATTTTATGCCTCTTGCACTTAATGGACGGAAGGGTTGCTTTACTGAGAGCttcccacacagacagcatcGTTGTAAAATGGAGGACAAAGCTGTGGACACGTCCGATCTGGAGCAGGAGCCTCAGGATGACCCCTTGGGCCTTGGTGAGATCGACTTCACAGCTGCAGCGCTGCTGTTTTGCCTAGAGGAGTCACCACGAGCCCGCAGAATCTCTGACACCCTCTATGCCTTTGGTGGCTCACGTGTCGATTTTGGAACTCAGACCTTCAGTTTCCCTGCTGCCATCTTGGCGACCAGCACTATGGTTGGCGAGGTGGCGTCTGCTTCGGCTTGTGACCGAGCCGCGCCTCGTCTCTCACAGCCAAGTCCCTTTTGTACTTTACGATTAGATTTGACTCTGGAACAGCTGGTGCCACGACCCAGCTGGGCCCCACGTGAAGGCTCCATGTTCACATTCGAATGTGGCCAACTGTTCCGCCGAGAAGAGTTCCTCTCACACTTCCGCAACGTCCACGGAGACATCCATTCAGGGCTGAACGGCTGGATGGAGCACCGCTGTCCACTCGCCTATTATGGCTGCACCTATTCCCAACGCAGGTTCTGCCCATCCAGACAGGGATCAAAGGTTGTCCATGACCGACACCTCAggtcatttgggattcagcccaTGATGGACATAGTAACAGAGCCTGGGTGTGATCGGCTGAGCGCATTGCCCTTTGAGATCCTGCAGCATGTAGCACGGTTCCTGGATGGCTTCAGCCTGTGCCAGCTGTCTATGGTGTCACGTACCATGAGGGATGTGTGCGCTAGTCTGCTGCAGACACGGGGCATGGTGGTGGTACAGTGGGAAAAGAGGCAGTATCCTGATGGGAGTCGATCCTGGCAGATAAAAGACAAGGTGTGGCGATTCAGTACAGCCTTCAGTCCCGTGACCAGGTGGGAGTTTGCAGACATTTCCAGCATGGCAGACCACCTGAAACGCTGTCCATATAACGAGGTCCATAGACAGGTGGAGGCCGTGCCGCTGCCGTGCATGTGCACGACCAGGGAGCTTACCCGAGGCGGGCGATCACTCCGTTCCGTCCTCAAGCCAGTATTataacaacgacaacaacaacaacaacaacaacaaaaacactttaACACCAGAGCGAAAGAGCTACAACACTACATTACCTAACCTCTTTAATCAATAATATTCATCGCTGTGTACATaagacaaattattttttgagttaagattatttttatatatagtatataaatctAACAACTGCTTCGATTATGATCAGTTTTAATGACACATGCACTGAGAAAGATTTTCAGTGTTTGCCTTGTTTCTCACAGAAATGTGTGGTAACGTCTAGAGCTGTTCTCCCCAAGAGGTAAcactaaaatgacaaaaataactcAGTTGAGTGGAGTCAAATGAAGAGCCTTAAGCTGTGGATTCGATTTGTAGAATTTGACGCAGTGGATTTACTTGTAGATTTCCTCATGCTCACTTCCATCAAGTGGTGTGTTACATTATGTCCGTGTACTCCGGTTGGTATGACTGGACAAGACCCTTACAGGAGGAGACATCTTTCCAGAACAAGCACCAGTGGAGCCAACGATGAAAGAGAGATGGCTGTGATTTAAGTGGTGATACCTTGCCACTACCGACTGTTATTCATTGCTAGTAATCTACTGCACAGATTCCCAAACCCTGTTCCTGGAGTTTCCTCTGTCCTACTCAGGAAGGAGCCCCTCTCCTTCTCAACCCCCAACTCAGGAAGGGTTCTTAATTaactgattagttgaatcagatgtattagagcagggaaaacacgaAAACATGCAGGGCAGAGGATACTCCAGGAACCTGTGATCTTGTGCTGGTtttgaatacattttcattttcagttttagaTGACCAACAGCTGATCCTAAACTAGCACCCATACTCTGTGATTCTGCATAATAAAAAAGGTATTGATGAGTAAAGGTGTTGACTTAGGATCAGAGTTTGGCAATTACATGCAATCTGGATGTCATTCTACACAAATAGGTTTGATATTTCCATCagaatacactttttttttttcattttctcacagtATGAGCTGTCAAAGCATGTTGGCCATATAATCATTTTTTCCTCTGCACTTTACTGAACTCTGTCACACTTGGAACCTTGTTCAACCCAGAGACTGGCATCAGTGTCATCATCTATCACTATTATTTTAGGAGAAAATGAGGGTTCCACTTTTAAAAGACACTCCACAAGCACttaatacatttctgaaaacaTAATGTAGCACCTTCCTAAATATTGTAAACACtcataatttaaatgtttacatgcaaaatgtgttatatCTCCATGTCCAAGTTCACAAGTGCATGTTGAATGAAAACGTTTGTGGATTGTCGCATTCATTTCCGAAAGCTTTACAATATGTGCAGTTAATCTGGTAGGTAATAATAAGTTGGTCTGCTTTCAACTACTGCAGCAATTTTCAGGCCTAATCCATCCACGCtcactttgtttttgtgtctttcatctttctgttctatttcttaagCACATCCAGAGCTGAATTTGATTGATGATTGGGATTGAGCAGCACTGAATTAGCTCATAATCCAAAGCCaagtttttgtgtttatgtctGTGTAATCCCAATGAAGGCCttatggagtgtttttttttgttttgttttgtttgtttgtttgtttttttggcaactcttgctgctgctgctgctgctgctgctgaagaagaaggaaagtGTTTGCCTGAGAAAGCGTGCTGGCACCAATGATATGGAAATTAAGCCAGGACATTATATAGTCTGGACCTGCATGTGGTTTTGGTTGTGTtgaataaaaagatattttatcATCTTTGA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579704.1 lncRNA downstream 100693 22467663 ~ 22469753 (-) True LOC117599239
TU307005 lncRNA downstream 146204 22422592 ~ 22424242 (-) True G259337
TU306958 lncRNA downstream 199357 22341861 ~ 22371089 (-) True G259294
TU306775 lncRNA downstream 534483 22031278 ~ 22035963 (-) False cpeb2
TU306772 lncRNA downstream 549295 22016486 ~ 22021151 (-) False cpeb2
TU307420 lncRNA upstream 74311 22653338 ~ 22656929 (-) True G259692
TU307467 lncRNA upstream 163717 22742744 ~ 22787979 (-) True G259724
TU307563 lncRNA upstream 390856 22969883 ~ 22973246 (-) False si:ch73-217n20.1
TU307564 lncRNA upstream 427333 23006360 ~ 23010550 (-) True G259811
TU307557 lncRNA upstream 431822 23010849 ~ 23012362 (-) True G259809
XM_026921116.2 mRNA downstream 591 22550556 ~ 22569855 (-) False epm2a
XM_026921113.2 mRNA downstream 719 22550565 ~ 22569727 (-) False epm2a
XM_034312051.1 mRNA downstream 1445 22550556 ~ 22569001 (-) False epm2a
XM_026921115.2 mRNA downstream 3221 22550556 ~ 22567225 (-) True epm2a
XM_026920940.2 mRNA downstream 265063 22284221 ~ 22305383 (-) False LOC113530701
XM_034311896.1 mRNA upstream 1125 22580152 ~ 22621931 (-) True LOC113530559
XM_026921134.2 mRNA upstream 52262 22631289 ~ 22642289 (-) True LOC113530805
XM_026921105.2 mRNA upstream 154925 22733952 ~ 22741554 (-) True LOC113530789
XM_026921205.2 mRNA upstream 179424 22758451 ~ 22762020 (-) True pdyn
XM_026921337.2 mRNA upstream 222897 22801924 ~ 22810621 (-) True LOC113530929
TU306971 other downstream 121019 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 615841 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1215749 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 1400748 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 1702488 20830828 ~ 20867958 (-) False LOC117599256
XR_004579695.1 other upstream 619555 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 1184647 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1922706 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1926601 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 2208663 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile