RNA id: XM_026921253.2


Basic Information

Item Value
RNA id XM_026921253.2
length 1657
RNA type mRNA
GC content 0.55
exon number 3
gene id stk35
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22775731 ~ 22783461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGTGAAATGGTACGTCTCGGtgtaagccacgcccacttctggtTGCTAACGCTATAGTTGAGAATGGTTCTATTATTGTTTACGTCCGTGAGGCTTGAGCGACGTAATGGCCAGTAAAAgcgaaagaaaaaataatagagTAGCAATAAGTAGCTCCGAGTCAGGAGAGTGATGAAAACTGGCACTTAGACATATATATGTTCGGAAACTCATGGAGTTACGCAACGCGACACGGAGGCAGTTAGTGTTAAGGAGCGGGAGGCGAAGCTGCAAAAGATCCGCCACCATGAAGCGGGACGCGGGGAAAGTTTTGAGGTCGCTCCCGCTGCAGGGCAACGACCCCGGAGACGCGACCATCGAAGAGGCCTGCTTTACCCTGGGCTTGTCCAAGCAGGCCGGCCTCGAGAACGCCAGCGTGGTCATGGCACCGCGGTACAGCTTGCTCCGGGAGGTGGGACGGGGAAGCTACGGGATCGTCTACGAGGCCGTGGCCCGAAAATCCGGCGCCCGCGTGGCGGTGAAGAAGCTCCGCTGCGACGCGCCGGAGAAGGTCGAGCTGGCCCTGGCTGAGTTCTGGGCCTTGGCGAGCTTGGAGAAGAAACACGAAAACATCGTCCAGTTGGAGGAGTGTGTGCTGGAGAGGAATGGCATGGCGCAGAAAATGAGCCACGGCAACAAAAGATCCAAACAGTATTTACGATTAGTGGAAACTTCATTAAAAGGTGAGCGTATCCCCGGTTATCCCGAGGAACCATGCTACCTCTGGTTCGTAATGGAGTTCTGCGAAGGTGGTGACCTGAACCAGTACATCCTGTCACGACGGCCCGACCCACGAACCAACAGGAGCTTCATGAAGCAGCTGACCAGCGCCGTGGCCTTCCTCCACAAGAACAACATCGTCCACCGTGACCTCAAACCTGACAACATCCTGATCTCACAGAAGTTCGGCATGCCCATCATCAAGGTGGCCGACTTCGGTCTGAGCAAGGTGTGCGCCGGTCTTGGATGCATAGAGCGTGGGTCTGAAGGACATGTCGAAAAGAACATCAACGTCAACAAGTTCTGGTTGTCGTCGGCATGCGGTTCGGACTTCTACATGGCGCCCGAGGTATGGGAAGGCCACTACACGGCCAAGGCGGACATCTTTGCGCTTGGCATCATCATTTGGGCTATGCTCGAACGGATCACGTTTATTGATGGCGAGTCGAAGCGCGAGCTCTTGGGCACGTACATCCGTCAAGGCAACGAGATCGTGCCAGTGGGCGAGGCGCTGCTTGAGAACCCCAGGATGGTCCTGCACATCCCACTGAAGGCACGGAGCTCAATGTCCAACGCCATCAGGACGCTCCTGCACGACATGTTGGCCGTTAATCCGGAGGACCGACCGGACGCCTTCCAGCTTGAGCACAGGATGGACCAAGTTACGTGTGCCACATGAACCAGACCAGATGAACTTCAAGCTGAATTTCAGGTTTGAGAGCAGCGCGAGCATCCGATCGCTCAGCGGGACGGAGAACAGGAGCGACGAATCTCAGTACTGTGAAGAGCGTGTCGGAGTAAGGACAGGAAATTAAACTCTTCAGGATGTGATGGAAATCAGACCGGGTCACGCAAAGCCCATAAGCCATCGTGCCTGCCATTTCTGCATGTCTGGT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08859 STK35, PDIK1, CLIK1; serine/threonine kinase 35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307080 lncRNA upstream 189922 22584557 ~ 22585809 (+) True G259403
TU306925 lncRNA upstream 272826 22502687 ~ 22502905 (+) True G259268
TU306924 lncRNA upstream 294631 22480557 ~ 22481100 (+) True G259267
XR_004579757.1 lncRNA upstream 545051 22227964 ~ 22230680 (+) True LOC117599300
TU306766 lncRNA upstream 624932 22148905 ~ 22150799 (+) True G259131
TU307196 lncRNA downstream 55756 22839217 ~ 22841739 (+) True G259498
TU307249 lncRNA downstream 229923 23013384 ~ 23015896 (+) True G259536
TU307252 lncRNA downstream 238509 23021970 ~ 23022448 (+) True G259539
TU307254 lncRNA downstream 242985 23026446 ~ 23064569 (+) True G259540
TU307418 lncRNA downstream 493973 23277434 ~ 23277909 (+) True G259690
XM_026921443.2 mRNA upstream 19798 22745066 ~ 22755933 (+) True gmeb2
XM_026921444.2 mRNA upstream 19798 22745072 ~ 22755933 (+) False gmeb2
XM_026920957.2 mRNA upstream 31706 22742054 ~ 22744025 (+) True LOC113530713
XM_026921103.2 mRNA upstream 40708 22721758 ~ 22735023 (+) True LOC113530788
XM_026920613.2 mRNA upstream 59585 22709993 ~ 22716146 (+) True LOC113530513
XM_026921401.2 mRNA downstream 51061 22834522 ~ 22851428 (+) False LOC113530963
XM_026921402.2 mRNA downstream 51061 22834522 ~ 22851428 (+) False LOC113530963
XM_026921400.2 mRNA downstream 51061 22834522 ~ 22851428 (+) False LOC113530963
XM_034312177.1 mRNA downstream 52287 22835748 ~ 22851428 (+) False LOC113530963
XM_034312178.1 mRNA downstream 52289 22835750 ~ 22851428 (+) True LOC113530963
XR_004579671.1 other upstream 96181 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 463843 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1233477 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 1544860 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU305940 other upstream 1870658 20903147 ~ 20905073 (+) False ubxn10
TU307769 other downstream 588286 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 588286 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 604077 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 1248766 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 1485116 24268577 ~ 24269267 (+) True G260483

Expression Profile