RNA id: XM_026921257.2


Basic Information

Item Value
RNA id XM_026921257.2
length 2745
RNA type mRNA
GC content 0.44
exon number 4
gene id lmod3
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15412170 ~ 15451350 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAGCTGAAGTTCAGGCTGACATTCACTTCGCAGCAGCTTGTGATTCTGCCTTGATTCTGCCTTTGGTTGAGCTTGTGCTTTCCTAATTGAAGCCACTCCAGTGTGAAAATGTCCAAGTACTGTGACCAGGACTCCTACATGGAGGAGATTGATGAAGACAAAATTCTCTCAGGTCTTTCAGCTGAAGAGCTCCAGCAGCTCCAGAACGAGATGGATGATATTGCCCCTGATAAGACAGTACCCGTGGGAATGAGACAGAATAACACATCTGTTGAAGCAACAACTCAAGGGGACAAAGAAAGGGAATCTGAGGATCAGGAAGACATTGATGAAGATGTGATTCTGGCAGGTCTTTCTGCTGAAGAGCTCAAACAGCTCCAGAATGAGATGGAGGTAATTGCTCCTGATGAGAGAGTGCCAGTAGGGATGCGACAGAAGGACCAGACTGATAAACCCCCAACAGGTTCATTTGACCATAGATCACTAGTGGACTACCTGTACTGGGAGAGACAATCTAAACGTTTGCTGAAAGAAGAAAGAATCCCTACAACCCTGCTTCCCAGTCAGAAAAGGGAGGAAGAGCTAAAGAATGCAGTGAaagaagataataaaaatattgatgtAGAATATGTGTATGAGGAGACAGTGGAAGATCCTGAGATAGGGGATCATGAAGAAGTGATTGAGGAAGTGATTGAAGAGGTAAAAGACAAAGTGGTGGATGTAGAAGCTGGTGAGAATGATCAAAAGAGACAGCCAAACAAAACAGAACCTCAAGAGAGTAGCAATATTATTTTTGCTAACTCTCATCCAGCTCCAAATTTCTCTGATTcacaaaaagagacagaaactcATAGAGCTGAATTGAATGAGGACGAATCAACAATAGCTGAAATTAAGCAAACAGATCAGATTCAATGTAAAACTGTTCCCTCAGCCTATGAAAACTGGGTTCctaagaaagaagagagagtcATATCCAAGTTGAAGATCCCAAAGCTTGCACTTGGTGatggtttgattaaaaaaactgcaaGGCCATCTGGGAATGATACCAATCTGGAAAGCACTCTGGACAAAATCCGCAATCATAACTCCTCTATCACTGAGATCAACTTAAACAATATTGAGAACATTCCTAAAGAAATGCTCTTAGACTACATTGAGGCCCTGAAGAAGAACAAGCATGTGAAGACCTTCAGCATTGCAAACACAGGTGCAGACGAAAATGTGGCCTTTTCTTTGGCCAACATGCTGCGAGAGAACAGGAGCATCACCACACTGAACATTGAATCCAACTTCATTACTGGAAAAGGTATCATTGCGATCATGCGCTGTCTACAGTTCAATGAGACTTTGACAGAACTCCGCTTCCACAATCAGAGGCACATGCTGGGCCATCATGCAGAGATGGAAGTGGCACGTCTCCTGAAAGCCAACAACACCCTGCTTAAGGTTGGCTACCATTTTGAGCTTCCTGGGCCCAGGATGGTGGTGACCAACTTGCTCACTAGGAACCTTGACCGGCAGCGACAACAAAGGAAGGAAGAGCAGAGGCTTCAGCAGATAAAAGAGCAACGTCAGATCATGGAGGTGTATGAGAGCCACCTCAACTTGCCATCTGGTCTGCTGGAGATGTTAGGAGGATATATTCCTGGAATCGAACATCTGTGTGCTTCTCAGGGTTCTCAGCATCTTTCACAAAGCTCTCCAGAACCTTCTATGGTATCAACACCATGTCACCAGCTACACAAGACACACCACCCTACTCGACAACATCCACCCAGTTCAGACTCAGACTCCAGCAATATGTTAAAAGATGTGAAGCTTAAGAAGACTCCTAAACGCCGTGACCCACTCCTGGATTTAActaaaaaagaagagaaaagagatggGAGGGCTAACATTCAATTACGAAGCACTCCCAAGCAGACAAACACAGCAAGTGAAGGCTCTCTGGATGACAGGGCAAACCTGAAAGATATGATAAAGTCACTGAAACCAGTTCCTCGAAGAAGACAGCCACCAAAAGTAGAACTAACACCACGTGACCTACTCCTCAATGAAATTAGACAGAGCAGTGTGGCCTATCTAAAAGCGGATGTGTTTGACAAAATTGATGAAGTTGTGCTGGCTGCCAAAGGCCTACAAGAAGTCACATCGGGAATGAAAGAGCTCTCCGACAGTAACAGGAGAACCATGCTGGTGGTGACGGACTCCCAAGCACAACAGCTACGGACAGCTTTCAACTGCCTTGTATGCAAAGGTTTGTATCCCCAACTCGTTACTTTTCTTTACACAGTCACACTGATGTTTTTCATAAAttcagtagattttttttttaaaccacaaattTCAGTTAAACGGTTAAAGGTGCACACAATAATTCTGTTTTCGCTAATATGGCAGTGATTTTGGACTTTTACGTACACTTAAATTGTGTTTGCAGTCTTGCGTAAAAGCAATAGTTTCTAGTTACTGATGCCATTCTAGAAATGAGCTGTTCACAATAGGACATGATTTAATCCATGAGTGAAGTGTACAAGAAGTAAAACATGAAAACCCGTATACTTCACTGGTTATGTTGTATCCTGATGTCAGCCTTCATGAGGTTTGTTACTCAGGTTTTTTCGACAGTGGAGTGGCtagctgccttatgtcccaggctgctttatgtcccagggtgccctcatgtctgtgttaccttctggctctcccttttagttatgctgtcatagctagt

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302361 lncRNA downstream 79719 15332126 ~ 15332451 (-) True G255435
TU302326 lncRNA downstream 152065 15258485 ~ 15260105 (-) False LOC113530775
TU302304 lncRNA downstream 184210 15182157 ~ 15227960 (-) False G255385
TU302303 lncRNA downstream 226198 15182157 ~ 15185972 (-) True G255385
TU302322 lncRNA downstream 231530 15180386 ~ 15180640 (-) True G255403
TU302438 lncRNA upstream 2783 15454133 ~ 15454354 (-) True G255506
TU302664 lncRNA upstream 201497 15652847 ~ 15657703 (-) True G255693
TU302681 lncRNA upstream 292390 15743740 ~ 15820154 (-) False znf512b
TU302675 lncRNA upstream 356353 15807703 ~ 15820154 (-) False znf512b
TU302753 lncRNA upstream 392241 15843591 ~ 15849718 (-) True G255772
XM_026921243.2 mRNA downstream 54313 15339996 ~ 15357857 (-) True birc7
XM_026921090.2 mRNA downstream 94805 15259585 ~ 15317365 (-) False LOC113530775
XM_026921088.2 mRNA downstream 94805 15259585 ~ 15317365 (-) False LOC113530775
XM_026921087.2 mRNA downstream 94805 15259585 ~ 15317365 (-) False LOC113530775
XM_034312166.1 mRNA downstream 94805 15259585 ~ 15317365 (-) True LOC113530775
XM_026920471.2 mRNA upstream 4168 15455518 ~ 15561095 (-) False zbtb46
XM_026920470.2 mRNA upstream 4168 15455518 ~ 15561074 (-) True zbtb46
XM_026920467.2 mRNA upstream 14707 15466057 ~ 15561114 (-) False zbtb46
XM_026920465.2 mRNA upstream 14707 15466057 ~ 15561111 (-) False zbtb46
XM_026920630.2 mRNA upstream 156935 15608285 ~ 15652605 (-) False uckl1b
TU301948 other downstream 707900 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 1261589 14129216 ~ 14150581 (-) False LOC113530423
XR_003403204.1 other upstream 36407 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 263685 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1196473 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1362034 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2225215 17676565 ~ 17695598 (-) True LOC117599224

Expression Profile