RNA id: XM_026921264.2


Basic Information

Item Value
RNA id XM_026921264.2
length 5015
RNA type mRNA
GC content 0.40
exon number 9
gene id znf362b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10422931 ~ 10437657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTTATATTCCATTTCTTATATTCCTCCATGCATAGTGATCTGattagtttatttatcattGCAGAGGAATTGGAGCACTGGATTTGGAGCACTGATGTGAATCTCAGCAATGGCAGTGCTCAGAGTTAGCACGCgctgtgctgtgtgttacaCACTCTGGGAGTGTTAGCGGCTCTGTGGGAAGCACCAGAAGTGAACACTGGGCGACCCGGAAGCGCTGCAGCGTGGAGGCGCACAGAAAGAACACCGAGGTCTTTTAGCTTTTATTAAGCTTCTCCTGCGAGGGAAACCGCAGTCCGAGCACAAGGCATGGCAGAGCCTCGATTCAATAACCCTTATTTCTGGCCACCACCTCCCTCTATGCCTGCTCAGACGCTGCTGGTGGCCTCACCGCCCTCCGACGCCGCGCAGCACATGATGCCAATCCCCAAACTGCAGCAAGTGCCGAGCCTGCAGGTGCACAACTCCACCCAACCTGACATCGCCCTGCACGCCCGCCCAGCCTCCAGTACTGTTCCAGAGGTTACCATGGATGACAAGTCAGCTCTGAAGGCTAAAGGATTATGGGAAGATTGGCACATGCGCCAAGCTGTGGATCAGGCTGTTAGAGCAAACCATCGTTCAGGTCTGGCACCTACTTCTCGTGCAGACAGTCACAGCACTTCACAGGCCATGACATCCACCACCACGTCCAGCAGTCAGAGCCGACTAGGAGCAGCATCCTCTCTGAATGTCATCTCAGGCCTGGCCAGTGCCCCTGGCATGGATCAGGTGAAGAACGTGGGCTTGGCGGGTATGCTGGGGCCTCAGCCCAAACCCCTACGTGGACGCAAGAAGATCAAAGCAGAGAACAACACAGGCCCCCTGCTGGTTGTGCCCTACCCCATTCTGGCATCGGGCCCTGACCAGTCAGTCACCATCGCCAAAGAGGGGAAAACTTACAGGTGTAAAGTATGTCCACTCACCTTCTTCAACAAGTCTGAGATGCAGATCCATTCCAAGTCCCACACGGAGGCCAAACCACATAAGTGTCCTCACTGTTCCAAGTCTTTTGCCAATGCTTCGTATCTAGCGCAGCACCTGCGGATTCATTTAGGGATCAAACCTTACCACTGTTCCTACTGCGAGAACTCTTTCCGCCAGCTCTCTCACCTGCAACAGCATACCAGGATTCATACTGGGGACAGACCTTATAAATGTGGCCATCCCGGATGTGAAAAAGCGTTCACACAGCTGTCGAATTTACAGTCCCATCAGAGGCAACACAACAAAGACAAGCCGTACAAGTGCCCGAACTGCTACCGTGCCTACACAGACTCAGCCTCTCTACAGATCCACCTGTCAGCCCATGCCGTGAAAAACGCTAAAGCCTACTGCTGCAGTATGTGTGGCCGTGCATACACATCAgaGACCTACCTTATGAAGCACATGTCCAAACACACAGTGGTGGAGCATCTGGTTAGCCACCACTCTCCACAGAGAACAGAATCTCCCAGTATCCCCATACGCGTCTCTCTCATCTGAGCTTTGATTTGCTCTTCTCTTTACCTCCTCATCTTATTCTGTGTGCCAGACTGCTCttctgtttagaaaaaaaaagaagacagaaaggAATAGACAGTACTGCAGTCCTGAAAAGGACACTGTGTCTGCCATACTCTTTGCTTTATTTAGCTGTTTAGTGAAAATTAGTATAGCGGCTCGACTGGCTGCCATCTCAACACCAGGTGTCTGCTGCTGATTCGCCTCGGACACCAGTCTAACTGACATGCATTccaaaaacagaacaacagaGCATTTTTCATTAGTTTGTTCTCATATTATGTTACTGAGGGTGTATTAGGAGGCATCCAAAGATAAGCTTTAAGCACTTTCCAGTCTTTGGGGTTCAGCTTAAATGTTTGAATTTTCAGACAGGACGTAAGGCCTTGTTTTGGGGCTAACAGTCTTTTAGTGTCATGGCTGTTTTGTTGGTcagtttctgtctctttttgcaTAAGGCACCATCAGGTTTTACAGggttgtgtgtttagtgttagtGTGGATATGATAATGCCTCCACTTTATACTCTTTTAACCATCGATAAACAGATATCAGATGTTGGGATAAAAACAAGAAGTAacatattaatcatttttttgaTAAAATAGTGTGATGTGTGAACTTGGCAAGGATGATTTGACCTAGAAATGGGATTAATGTGTGAGAGCACGATGTCAGTGTGTTCAGAGAACACCAGTGCCGCACTTGGTGATCAGTTTTTAGCTTGCTTtattacatacacactttacataACCATTTTACCCACACTTCATAAACTAAATTGTAGTAGGTGTGCACCAAGGTTATGTGGTAAGagttccttttatttttatactctcTTAAAGGCATTTTTCTATGGAGGCTCTATAGAAAATGTGCAAAGAGCATCAGTATGACCAGATGCTCTCTAAAATAATCTCTTATATGAATTACATCACAGATGTACCATgtatccttttttttgttgtgcaaTGTCATGGAAATCAGTTAGATTTCCTGTCTTGTCCTTTAGGCCAATTCTAATGTTGTGAGGAAAATCTATCATTTTTAGCACTTCATCATACGACATTACACTGTCCATTAAATGGGTTGATGTACTGACATGGTGCGGTGCAAGTCAGGGGTGTATACTCATGACCTCTGCCAAGCCTTTTCTTCATCCCTGTAAAAATGAGTAATGTAGAAGCACCTTGACAAATGATTGAGAAGCTGCAACAAGTCATGGGTCTTTTAAATGATGGTCATCATTGGGGATTTCAGGACAACAAAGCAGCAGCCCAGCGCTGAACTTTCTAGTACTGATCactaaactttattaaaaaaatgccagTGATGCAAAGATCCAACTGTAAAAGCTTAATTTTGTCTAGTTTCAAAAGATCAGCTATTGTGGCTCATAGTGAGGGTGTATTGTAATgtgctcagaaaaaaaaattaagtaatttAGCTGTCAATGTACTCTAAATCAGCaagagtaaagaaaaaaatgcttcttTAAAAAGTAGCAACAGTATTAAAAGGGAGTCGCAGAAACAATATGAAGTATGCATAAGAATGTAgttgtaaatttaaaaagtctttGCCAAACATTGCATTCCGTTAGATCATTTTGGTTGAGATATGCAAGTGTTTATTTATCCTGTACCAGCTAGTAAAAACTCTGGGCAAACATTACTGCCTACAATATAGACTATTAGGTGTATATGATTACAATTAAATCTGCTGTAAAAgagattacatttacatacaacatATACCCACAAACCTAGTATGACCAGTGTAtttctcaattttatttatgaacataGCACAGTTTccctgaatattaaataaatgaaatagacATTTGCTTTACAGCTAGCTTTATAGAGGAGAGGTAAGTTAAAGCTCATCCTGGCTTTAATTAAGTATAAATAACGTCTGATTAGTTTAAAGTACAAATGTTTAGTATTCAGTATTACTTTTTCCAAGAAACTCCCCTGAATGTGGCCCAGACAGGTCAATTGCAAATGaaggtgattttaaaaaataataataattgtgaaGTACATCAATTTGTTTGTATACATCCTAAATTAATGAGTCagttcagtaaaataaaatgaccaatACATTTTTAGTGTCACATTGTTAGTTCCGTAAAGTAAAGTTGTAATATTCGGACTTCTCAAAGTCTTCTCAAAGTGATTTGCCTTGTCAAACACTGCAGTGATTTCACTCACAggcgttttgtttttttaatcatcagtcATAATATACCAGTCATTTGTTAAGCTCATACTGTTTAATTCGAGAACATTAAAGCAACTGCCAGAAAGTTTTTatcagtgtgttaatgtttaatgttctcATTTCGTTCTTTATTATTggtgttattgtttttgttactgtttcaAATGTGTATAGATTTCACAAGTTGTTGCTTCCGATGTTCCAATAGGCCAAAATTACACTGGTCTAAATAAGAATTTGTTCAGTTTACTGATTCAGCAAattgtcaattaaaaaaaaaaacttgtaagTAGCCCAAATGTTGCTTTCTGATTTCTCTGAGGTTGCATTAAGAAAAGTTGAAAAACTCAGCAGAGGAGTAATGTTGTGTTATGTATGTTATCTCTGTAATTCTAATAGAGAGAGCAAAGGGTATACAACTTTTCCTCTTATGAAGAGGCTCAAGTGTTGGTTTGATCCCATGTCATTGTGTCTGTAGCCTAAAAAGAATGTTCTCATTGTGTGTAAAACCTCAATAGAAAGCTGTACAATGGAACTCAAGCATGTTTACATATCAAAGCCCCAGTCAGTATGTTCTGGCCATTTtggttttctcatttctcataGCAGACTGGCAGAAACTGATTGcgatgttaattttttttttgcacactagtCCTCTTTTATTTAGCTCTGAAACAATACATCCTAACTGGGGCTTTAACAGACTCCAGATTACTTTAGCCAGTTGTCCATTTGCCGGAATCTCTTTATATCAATgagatgtgtacatttattataaagtaTACCATGTATTCATCATTAATAGTGCAAATTACAAGCTTTAGCTAGtgtactttgtttttttatctgtatttcCAGTTATTGATGATTATCTCTGTAAGTACTGATTGTTTTTAATATCCattctttttatcatttatttgtaCCTTGAATATTCACCTTGATGGTTGTATTTCttccccccccaccccccatgTTGACGTTTTCAGTATTCAGTCTGTTAAGCCTTTTTTATGTTTCCGCATGGACTTCTCTGACAGTAATTGTTATTAACTGTTAACAAATATATGACATTGTTATATATGTCTGgaaattattacatttcatttgtcTTGCATTGTGGTCTCCAAGATTTAATTCAATATGCACAGACAATACAGCGAGATTTAATTTAGGAAATATCAATGTCAAGAACACTTTGTATCTATCTTGTTTAATAAACTCAGACTGTTATA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298798 lncRNA upstream 256141 10166549 ~ 10166791 (+) True G252422
TU298760 lncRNA upstream 257677 10164708 ~ 10165255 (+) True G252389
TU298668 lncRNA upstream 421484 9998684 ~ 10001448 (+) True G252336
XR_004579703.1 lncRNA upstream 476000 9944562 ~ 9946932 (+) True LOC117599238
TU298408 lncRNA upstream 692877 9708095 ~ 9730055 (+) True G252116
TU299103 lncRNA downstream 102790 10540447 ~ 10540656 (+) True G252674
TU299104 lncRNA downstream 103613 10541270 ~ 10541479 (+) True G252675
TU299087 lncRNA downstream 182992 10620649 ~ 10623909 (+) True G252665
TU299090 lncRNA downstream 182992 10620649 ~ 10633419 (+) False G252665
TU299148 lncRNA downstream 187195 10624852 ~ 10628804 (+) True LOC117599292
XM_026921177.2 mRNA upstream 80504 10290096 ~ 10342428 (+) False kcnab2b
XM_026920649.2 mRNA downstream 180269 10617926 ~ 10618814 (+) True taf13
XM_026920650.2 mRNA downstream 180280 10617937 ~ 10618814 (+) False taf13
XM_026920651.2 mRNA downstream 180282 10617939 ~ 10618814 (+) False taf13
XM_034312143.1 mRNA downstream 201109 10638766 ~ 10651923 (+) True si:rp71-17i16.5
XM_034312144.1 mRNA downstream 201175 10638832 ~ 10651923 (+) False si:rp71-17i16.5
XR_004579736.1 other upstream 83727 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 1797070 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 2064832 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 2085433 8312773 ~ 8337499 (+) False atp13a2
TU299368 other downstream 411194 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 434372 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 558952 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 793772 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 822190 11259847 ~ 11259918 (+) True trnah-gug_14

Expression Profile