RNA id: XM_026921268.2


Basic Information

Item Value
RNA id XM_026921268.2
length 2182
RNA type mRNA
GC content 0.45
exon number 10
gene id slmapb
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11030067 ~ 11039455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCCCCCTTCCTCCTCAGAAATGGAATCGTCTAACGGCTCCATCAGAAAAGCAAATGTGTGGAAGAGTGTAAAAGCCAGCAGTGCCTCTGCTTCACCTTCACGACGCCTACCGGCAGCGGAACACCAGTCCTGTGATAAGGAGGAATAAATGGAGAGTCAGCAACTGAAGGATCCACTGAATAAAGTTTCACTAATCAAAGATGAGCTGACTCGGAGCTCCATGGAGGCCAGTGAGTCAGAGAAGGTGATTCAGCACCTTAATCAGGAGCTGAAGGAGGCCCATGATCAGGCCAATGCTGGCAAGCAGAAGTGTGTGGAGCTGCAAGGCCTTCTAGAGGAGGAGAAGCGGGCCAGCAAGCATCAGACAGAGGAGTCTGCAAAGCAGATGAAGATTCTTCAGACTCAGCTTCAGAAGTTGCAGGATGAAATGGAAAATCTCAGGGAACAGAAGGACAGTACTATTTTAAGTATGCGACAGGAAGCACACGCATCTCAAGAGGAAATGCAGGTATTGCGCCGAAGCATGGAGAAGGCTGCAGCCGAGCGCGAGCACGAGGTCAGCGCTCTAAAGGGCAACCTGGCAACACTAACTACTGAGCTGGAGAAATGGCAGTTGACTGCAAATAAGTACGAGCGTGAGATTGACAGCCTGCAGGCAAATCACCAGCAACAGAACCAGCAGAGAGACAAAGTTGCTAAACAGCAAGCCAGTGAGCTGGAGAAGCTGAAGCAGGACTATGAGAGCCtgcagagggagtgtgtgtctctcaggtCAGAGCGGGAGCAGTTGGCTGCACAGCAGCAGAAGGAGAACAGCAGTCTGCAGAGTGAATGCTCGTCACTGCGCTCTGAGAAAGATCAGCTTCTAAGGAAACTGCAGCAACTGGAAAAAGAGCTAGACAGCTGTAAGAAGCAGAGTGAAAGTCTGAGCAGCACGGCAGAGGCTCTGGAGAAGACAAGGGCTGACCTAGAGAAATGTCTGAGTGCTGCGCAGGAGGAGCATCAGAAAAACTGCAGCCAGCTTCAAAGCCAGCTGGAGCAGAGCAAAACGAGGACCAAAGAGCTGCAGAAGGAGTACGAAGAGACGCAAGCAGAGCTGTCAGGCCTGAAAGAGAGGTGTGAGCAGGTAGAGCAGAACAAGGAGTCTCTCAGCCTGGAACTGCAGCAGTGCCAAGCTAGCCTGAAGTCTCTGCAGGAGAAAAGCAGCCAACTGTCTTTATTGCCGCCCATCCTAGCCGTAGTCATCGGCCTTGTCCTGGCTTTGCTGTATTGGTGCTTCGGCCCATTGTGGTAGAAAGGAAAGATGGATCAGGTGGATGCCTGTCGCCGCTGTAACAGTTGCTGTCACAGCCTACGTGCTCACAAAGACTTCAACCTGAGTATCTGGCACTATGAAGCACTAAAAAAACCACACGCGCACATTTCCGACCTTACAGACATATTGCCCTTTTAGTATAAGAGGGCTTTATGTGAGAACTAGTGCAGCTTGTAACTATAATATTGAATGCTGAAGGCCTTAGTTTAATTATATAGGGTATTAGATCCATATCAGATCCAAGCTCCAAGCAGCTGCAGTGTTTCTGTAAAGGCGAAGACTTTTAGACTTTAATGTGTCTAAATGTTAGTTTTCTTCCTGCAAAATGTAGTTATTTTGCCAAACATTTGTATTATACGCATTTGCCTTACTGAATTAATGATGAGGTTAGCCCATTTCCTGATTGCACTGCTATATTTCGTctgctataaaaaaaagtcagctttaaataattattttaataattcactATAGTGAAAGCAATAATACATTTGAAACATGTACTCACATTTGAAGTCTTGCACACTATGAAAATGGTTCTGTTCTGCTAGTTTTGCTCTTCTTGTACTGATTTAATCGTGTTCGTCTTATTTATCTAGTTGCCAGTTCTGATCTTAATTTAAAGTTACAAAAACAAAGTTTATGCCCTGTTTGTCAATGTTCTATAGCTTTTTAAGTATTAAGGTATTAACAATCAGAATACTACACTTAAAGTTAAGAGCACTAATTTGTCTCAAAGAGACACTTAAAGCAATTAATTTGTTACTTGTACAGATGTTTGCTGAAGGACAGAGATTTAAAAGTGTGCTTGTTGCAacaattaaacagaaatattaatggaaataaagaagaaagtgtgtgttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299474 lncRNA downstream 7042 11021959 ~ 11023025 (-) False abhd6b
TU299471 lncRNA downstream 14437 11009824 ~ 11015630 (-) True LOC113530950
TU299468 lncRNA downstream 23450 11005952 ~ 11006617 (-) True G252969
TU299463 lncRNA downstream 32631 10994816 ~ 10997436 (-) True G252967
XR_003403161.2 lncRNA upstream 49610 11089065 ~ 11091286 (-) False LOC113530615
TU299537 lncRNA upstream 49622 11089077 ~ 11090683 (-) True LOC113530615
TU299539 lncRNA upstream 49622 11089077 ~ 11091335 (-) False LOC113530615
TU299705 lncRNA upstream 225454 11264909 ~ 11265149 (-) True G253174
TU299971 lncRNA upstream 314047 11353502 ~ 11354217 (-) True G253383
XM_034312050.1 mRNA downstream 5058 11020531 ~ 11025009 (-) True abhd6b
XM_026920311.2 mRNA downstream 10352 11016816 ~ 11019715 (-) False kctd6b
XM_026920310.2 mRNA downstream 10352 11016816 ~ 11019715 (-) True kctd6b
XM_034312180.1 mRNA downstream 14401 11013958 ~ 11015666 (-) False LOC113530950
XM_026920265.2 mRNA upstream 3808 11043263 ~ 11049735 (-) True atp6ap1lb
XM_026920729.2 mRNA upstream 74824 11114279 ~ 11115673 (-) True LOC113530590
XM_026920567.2 mRNA upstream 198797 11238252 ~ 11242304 (-) True apobec2b
XM_026920565.2 mRNA upstream 208197 11247652 ~ 11254606 (-) True si:dkey-109j17.5
XM_034311770.1 mRNA upstream 208197 11247652 ~ 11253543 (-) False si:dkey-109j17.5
TU299470 other downstream 14437 11013964 ~ 11015630 (-) False LOC113530950
TU299234 other downstream 391349 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 560533 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 1000074 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 2451467 8566656 ~ 8578600 (-) False ttll10
trnae-uuc_4 other upstream 219588 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 233875 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 416566 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 416566 11456021 ~ 11462706 (-) True LOC113530309
TU300077 other upstream 517432 11556887 ~ 11568530 (-) False avpr2ab

Expression Profile