RNA id: XM_026921273.2


Basic Information

Item Value
RNA id XM_026921273.2
length 8335
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC113530897
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11123944 ~ 11223630 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGCTGCCTCGGGATGAACGGATGTAATGTGCGCATCCATGCAGCGCAGCACAGGAGAGGGAGGGTGAGGAGAGGCAGCGCAAACATTCACACGCGCAGCGCTTATCCAGAAGCATAAAccaaaaaataatacagtaaaaacaCAGCGACCGCACGGCTGGagacagaagcagcagcaggggaAAAAGCGACCATCCGCTGGCTGAACTTTCCCGGAGATTCCGCGTGTGCACTCTCCCAGACTGCGCCCTGGACACTCGCTCTGCAGGCACAAAAGAAGGTGGAAGATGGACGCGGCTGGCGGTGCTGCTGGGAGGCGTGAGGACTGCAGAGTGTGAGCGGAAATCATACGGATGCTGACTACAGACCCTTATCCACCAATCCCACTGGATTCCTGTTTGATGGAAATACATTGTCTGGAAAATATTTCCGACAAATCATGAAGGACAAAGGCTTCAGATCTTTTCAGTGGAGTAATGTCTGAAGATAAGTAAAGGGAGGCATTTGCTCTGGCCTCTAGCTCGGTAGTCTGATTACCCAGAGACTGCCTGCTTCCAGAGGCTTTTCTGCTTCTCTTTGGCTGTGGAGGGGAGGAAATGAGCACTGCATGAGAAATCACTGTTGTGGATTACTGAGGATCAAGCCAGACCAAGACCCCCTGATCAGTAATGGGAACTGTTAGGAGGAATTACACCTGAAACTTGACTGAATTACCGAAAGCCAAAAAGTAACCTTTATGCTGTTGGAGTATCACTTCTGACATGTATATCAGTTTTCCGGTGTGTTATTTTAACCGATCCACTCTTCCACCAACGTAGTGAAACAAAGGAGTGATGTATACATAAATGGTTATCTGGCTGAAGAagcaacaaaaatgaataaaaaatcaGGAGAGACTGAAGGCCATTTTTGCACCATTTACGGCAGTTGAATTCCCCCTTTtctggaggaaaaaaggaataaatctcTGCACCTCTGGCACACTGACAATAGCTGCTGCTCCAGAGACCACATTTGCCCTGTTAGCTTATCATCTCTTATTTTGTTTGCCTTGTTTCCCTGCTGCCTGGCACCTGTAATGTTCCATCGCCTTTGTGCCCATGTAAAACCATGCCAGTGCCTGAGATGGCTGTAAGTCCTGTGAAAACTTTGCAATGGGAGGTCTTCCCCCCAATGGCTACATGCCGAGTCTACTGCACTCCTGTGCTGTGGGGCGGCCGCCTGTATGTGATGGGGGGCTGCAGCGAGAGTGGAATGCCTCTGGACTCTGTAGAGGTCATGGACTTAGAGAGCCAAAGCTGGTGTCAGCTCCCCCCATTGCCCACTGCCAGGGCGGGGGCTTCGGCTGTGGCACTGGGGGACCAACTGGTGGTGATGGGGGGCATGGACGCTCAGCAGAGCCCACTGGCATCAGTGGAAGTCTACCACCCTGACGAGGGCAAGTGGGAGAGGAAGACTGGACTGGGACAGGCATCAATGGGCATAACTGCCTTGGAGATAGatgGAAAAGTGTACGCGCTGGGGGGTATGGGTTCTGACACCACTCCGCAGGCACTGGTGAGAGTCTATGAGCCAGTTAAGGATCAGTGGCTGTCCCTGGCCTCCATGCCCACTCCCCGCTATGGAGCCTTCTCCTTCCTGCGTGGCAACAAGCTCTACGTTCTCGGTGGGCGTCAGGGCAAGATGCCGGTGACAGCGTTTGAGGCCTTTGACCTGGAGATGAAGAGCTGGACGCGCTACCCATGCATCCCAAGCCGCAGGGCCTTCTCTAGCTGCGCCGCCACAGAGCGTGCCTTCTACAGCCTAGGTGGCCTGCAGCAACCCGGCCCTCACAACTTCTACTCTAGACCACACTTCGTCTCCACTGTGGAGGAGTATGACTCTGAACAGGGTGTTTGGCTGAAGCCCACGAGAAGCTCCCGGATGAGAGAAAAGCGGGCGGACTTCGTGGCCGGCTGTCTCGGTGGAAGGGTGATTGTTGCCGGGGGGCTGGGTAATCAGCCTTCTCCGCTGGCCTCAGTAGAGAGTTATAATCATGTGAAGAGAAGGTGGGAGGCTGTGGCTCCCATGCCCACCCCGCGCTGCTCCTGTACCCCTCTACAGACCACGAACATGCTATTCCTAATTGGAGGCGTATCACAGGGTCCCAGCAATGCCGTAGAGGCCCTCTGTTTGCAAGAAAGTGTCTGACACACCAACCTGTTCTCTTGCACCTATAAAGAACTTGTGCTGGACTCTGCAGGGATTACAGACATGCAGATGAAACTGCAGAGTCCTGCTCCGCCTGAGTCCTCCTCCCACGCACAGCTGACAGTTCAGTGGAGACAATCTACAGGAGTCTAGACAGCAACATGAATCTCTGGATGGACTAAAGACTTTGAAGTCTCAGacaagcaagcaaaaaaaaatctctatgtACACACAGAACTACACAGGCAGAGGTGCAGATGCCTTTGAACTGTACAGTGTTTTTCACAATCAAAGCAGGGTACTTTTCTGGCTAAATTCAAAAGGAACTTAGGGCCATATCCACCACGCTGCCGCAGAGTTCACCTGCAGTAGCACGTTTAGCACTTTTTCTATTGCATTAGGGAAAAAGCAAAGACGGAGTGGATCTTTGCAAGAGTGGAGGCGTTTGTCTGTGCGTTTTTGTACCTTCACAGCCATGCATGTGTGAAATTCAGCACTATTATTCTTAGAGCGAGAAGAACATGCCGCTAATGGTTAATAATTGATGCCTGTGCTGTAGCATGTTATGGTATGGTTTTAAGGCAGTAATGGAGACAGAGTGAGTCTAGGAAGTATCAGAGCCCCACATAGTGCATTTAGAACTTTAAAATTACCACATTTAGCATATCCGTAATACTCCCTAAATGAGTACTTGGCATTAAAGGTGATGGTTTCGGTGAGTGGATTACAAGTAACATCTTCGAGGCAGGTTTCTGAAAGTGTAGAAGGGAGCAGCATGATGCTGGTGTCATGCCATGTATACAGTTGGTCTTAATGGAAAATagaagtttttttaaacagaactaaGGTTATCATGTGAATGCTCAGATCAAAACACAATCCTTTTAggtaatatacacacatttactgcttggacacatacacacaaacattacaccACATTATTACATTGTACATGTACATcacaatattacatattatttcaCCATGGATTAATTGAAAGTGGCAGAAGGCTAATGTGCAGGTATATTATGCATAGTAGAAGGAGGTGGAAATAGTGGTGGCAACACCTAAGAGCCCTAAAATTCAAAGGCTGActgatgattggctgatgaaaAAGTTGCAGTCAAATATACTATACAAACTACAGCTGGCAGCAGGAATGCACATGTATTCTGGCCCTGAATGACAGGAAATATCTCCCTATAACAGAAAGTGGCAGTAGTCTGTACtattaaattttaaagaaagaaaaccttaagaccacaaaaaaaaaacctgttccGAATTGCTTACTACTGTTTTAAATAGTATGTCAAAATAGTATCAGTGTGttgtcagtatcagtatctaTAGTGGTGTACTATATACtttgacatactatttagtgcAGTATTATGTAGTTGGGGATGTAGCATGCCACTGTGAAAGAGCTTCCCTGGAATGTAAACAGTGCTCGGTCATTTAATTACAAAAGTATAGCTAGCTACAGCTGATGAGCAGAAGTTGAGACACCTTTTTTATTGTCATGAAAGGGTTATTTATTTGCTGTACGTTCAATTCTGTTTCTTTGAATGGACACTGACAAAAGGGACAAGGCAAAAACTACAGGGCCGTCATGGACCAGTGTGATTAGTTTCGGCTTTTATGGCCCTGAGGCATTATAATACCCCAGGCTTGTCTCACAGCCCACCCTTAACAGGATGCCTGGTGCCTGATAATAAGacacatacatattcatacTGTCATATTTAGACTGTCTCTAGGGTTTACTGCTGCCTCACAGTCATGTCTGTCTGTAAGGAAGGGTTAACTGTCTCAGACGAATGCTGTGTGGATGACGAAGACATTCATTTACCTCCAGCATTCGAGCGACACATGGCCTGCTGGCGAACGTGATGATCAAAGAACCATGCACATATGGTCcatgcacacatgtacacacccACTCTTACCAAGCACGTCTTGTTTGTTTAGATTTACACGTCCCTAATGAGACAACTGTGATAGTCTTCAGGCTGTAGTCTTTTGCAGCATGTCATAGTAGAAACTTGATAGCTCATGATGGCACTTTACACTCTGCCTGGGCAGAGATAGCATGGAAACACATGAGAATGCGTGTACAAGGAAAAAGTGCTACTTCTACTTCTAGAAAAGGACGGCTTGTTTTTGTCGTCCTGCTTCACCATCACAAGCTCTACTGCACTACAAAGGCAAAGCATACTTCTTGCATTGTGCATTGTGTTTGGCTTGAATAAGGTTTTGACAGAATGTGACAGCCTCTGGGCACTGTACAGGCAGGGGGTGTATGAGTGCATTAATTAGATGATGTTGAAAGAGAtatacctctttttttttttacacttatgGTGAAACATGACCTATCAGTGCAATGTATTACAGTCCACTATTCTGAACACGCATATATCTTAATTTACAGTCCAAGTAGGAGCAATATTACTTTATTTCTAAGCATCTGGTTTTAGAGAGCCTAGTGGTAGTGATATAAATGAATTagacaattttattttactagATGATCTCATTGAGCTTGAATATATTGGCCCACTGAATTTCTAACACAAGGAACACAAGGTGTAAAGATCACCTTAATCTTGAGTagcagtgttgctgtgattttgaccatgtTTTCTTAGTCATACATATTTCCCTGTGGTGAATCTCTAGTTTGAACCAGTGGTTTTAAGTCAGCTTTCCCAGTGCTTTGTGTTTGGTTGGTctacatgtttgttttgttcatctGTGATGTGATAAGTTGTCATTGTTCACCCTTTTCTGAAGAGTTGTGGTGCTGGGTCTGTCCTTTTCTCTGTGATGCTGTGTTTTGACATTTGTATTTGGTGTGTAAGTGCAGGTTGTGCTAGCTGATGGGTGCTGATGGTGTCTGACATGACATTCCGGTACCACATTCCAGAGCACAGCTGAGTATGTACCTCCTATTCAGAAAACCTGCCAAAGAGGACCTCAatcaaagaacaaagaaaatacCACTATAAAAATAGTTGTCTAgaggatatatagtgtatagtgtatagtgaaaGGGTGTGTAAAATGTGCAGTTACAATCTCCCACTAGAGAACAGTTTTATATCTCCAAGTCTGTGCCTGTAGCAGGCTTTCGCTGTGTTTACATTAGAAATAATGAAAGCCTATGGTACAAACAGATCCAGTACACCTAAAGAAGAACATAGACATTAGtccttattcatcaaagttgtGTTATTGCTCATACTACAAGAGTACGCAAATTCCAACTTCTCCGCGGAAATTCCCTTTTCATCAGTTTGGTGTATCTGTACAAAACTCTTGGCTGCTCAGAGTCTGCATACATTTGAGAGCGACATTTTAACAACCTGAACAATGCTTGATTTGCAGTTAAATTATTGACAGTAGCAAGTACATTATGGTAGAATAGCATaagtaacagtaaaaataaaataatattcataatcaGTTGTGCACACGGGCATCTTGTTGCAGCAGCAcaacacataaaatcatgcatatacaggtaagagcttcagtttgatgttcacatcaaacatcagaatggggaaaaaatgtgatttcagagATCACGACAGTGGTATGATTGTCGCTgcaagatgggctggtttgaatatttcagaaattgctgatctcttgggattttaaAGCAGAACAGTTtatagagtttacatagaaggtgctttaaaaaaatccaattagCGGCTGTGGAGAGCATAAAAggatctcagaatgcacaacacagtGGACCTTGAGGCggagatgggctacaacagcagaagacgaCGAAagggttctactcctgtcagccggGAAGAGGAAAAACAAGAACTGGGCAGTTTCTGTAAGCTTGAGCCTATTcctagcaccaacaaccatgccacaaagTCACTAttatcatatttttccccattatattttcacatgaacatgaactgaagctcttgacctgtatctgcatgattttatgcattgtgctgctacattattggctgactggataattgcattaacaagcaggtgtacaggtctTCCAATTAAAGAGGCTGCTGTTTGTATATTATCACACATTGAGGTTACATAATTTCATATCCAGACTAAAACTTGCcagatatgtttttatttacttttggtAGTTTCAGGGTTTGATTCatttctttacacattttgtttgaaTGAAATATGGATTTGGCTCACctacatttaattaaatcttcAGACTTCAGTTAAACCCAACCTATTCAAgttctaaaatgaataaaaaagccTAGCTACAAACAGAGTTGGTAGGAAAGTTCGAAAATGGTCCATTGTCCTACCTAATTTGAaaagttaaagtttatttaaaaaaaaaacacacacacacacttccatgtcTACACTTCTACATacaattacattaataataataaaaaaataataataaatgaatgcaaaacacaaatatattggACCATAAGTTCTTCTACTGAAACTAGCTAGTtggtttttcttcatttcaagttttcattttttgcacacttttttAGGATACCAACAGCAACCTTGGACACAAGCACCGTTAACTCAGCTTCACTGAAAAGTATTTTCTCCTCTCTGTACTTTTCCCAATTCTAGCCAGCTGAATGCTTCCCTTCTATCAGCTCACTATCACAACGCCTGAATAAATTAGGGTGTTTTACGCAGCTGTGGTTGAATCATCAGCTGAGTTTGAGTCATCATTTGTGCTCAAATCACCATTTCTTTTGATGTCATACAGTTGTATGAATCAAATTCAGATTTGCTTGAGCAAATCTCAAATCTCTGCTCGTTTCTTTGCGACTTTGATGAATAAGGCCAATGCATTTTTAGTGTTATGCTGCTTTCATTAGCAGGACTGTTAACCCTGCAGGTTAAACCTGCACACTGAACTTCATTGTAACAGACCTATTAATAGCAGAACATTCTTCTCAGAGGTTTTTCTaatatgaattatgaatatgaattagCATTAATGGTATAGGAGCAGGAGCACTAATATCCCTACTCTCTCCTGGATCATATTTCCAATATGCTCATACTCTTCTGACAATCAATCAATCTGaagcaattttaaatgaaaccatCTAAACTGGTATCAATCTTGACTTTTTTAAAGACCATTAAACTTATTCAGCCAAAGGCATTAATTTGTACTTGAGTAGAAAGGCAACACTTGTCTATGCTCGGGCAGTTAATGAAGACGACCACTGGGGCTGTGGCACATGTGGCAGGTTTGATTTATcactttacttactttatatGGAGAAGCTACAATAGGCAGCTTCATGACGTCAAGAAATTCAGAATCACAATTTGAAGAGTAGCAATTTTACATTGTAGAGAAGTGGCCTAGTGTTAGATATTCTTCTAATCCATTGTTGTGCTTTACCTAATATGAGTCCATGGAGACTGAAGTTTCAAAGTGGTatcaagaaaaaacaaacttgaATGTAACAGTCACATACAACATTGTCCTACAGTATTTAAGTGAACCTAATTCCTCATTAATGACAGACCAACTAATTAACCCCTCCATTTTCCAGTGCATATTGTAAAAGCATATCATACACAAACCTTCACTCAGACTGGCATAGTTGCTGACAGTGCTCTGGGATAACACAAGTTCGTGCAAGTTTGTGCCAGCGGCTCCAGTCCAGTAGTTCAGTGCCTATATATGTGAGATAGTGCCTCTACTATGACTCCTCTAATAAAAGATTTGACCATTGCTGTCCAATACTGTTTTACTGTGTGCCTCTGTTTTGCCTCATTTCTTTCCCCTAATTTCAGCTGAACGTGACAGCAGCCCCGTCACGTGCCCCGGACCATGAATACATCTGGCCAGCACACAGAAAATCTGACAAATGGATTGTGCTCAAATGTCACAACCATTCATTATAGATGAAGTAGAAACCACCAGAACATCTTCAAAGGTTGCCATGGGCTATTGTAAGAGAGGCGCAAATGATTTTCTGGCCTTGCTACCTTGCCTGTTATTGCTTCGATTTATGACTCCACATTCAGCAGCCTGGCAGTTGAGGGTCATATTATAgaacagattttctttttttgttactgtgtttactgtgtgtagAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299500 lncRNA upstream 19914 11104139 ~ 11104527 (+) True G252996
TU299459 lncRNA upstream 85010 11038218 ~ 11039431 (+) True G252966
TU299445 lncRNA upstream 124621 10998081 ~ 10999820 (+) True G252955
TU299384 lncRNA upstream 162799 10949669 ~ 10961642 (+) True G252903
TU299383 lncRNA upstream 171259 10949669 ~ 10953182 (+) False G252903
TU299682 lncRNA downstream 21131 11244761 ~ 11245472 (+) True G253152
TU299681 lncRNA downstream 22268 11245898 ~ 11246862 (+) True G253151
TU299753 lncRNA downstream 147073 11370703 ~ 11372352 (+) True G253210
TU299755 lncRNA downstream 149365 11372995 ~ 11376620 (+) True G253212
TU299761 lncRNA downstream 168804 11392434 ~ 11414634 (+) False wu:fa11c10
XM_034312187.1 mRNA upstream 20853 11090187 ~ 11103588 (+) False tasorb
XM_026921133.2 mRNA downstream 1979 11225609 ~ 11228356 (+) True guca1b
XM_026920569.2 mRNA downstream 7748 11231378 ~ 11237023 (+) False oard1
XM_026920568.2 mRNA downstream 7755 11231385 ~ 11237367 (+) False oard1
XM_026920304.2 mRNA downstream 37144 11260774 ~ 11264393 (+) True ebp
XM_026920483.2 mRNA downstream 56199 11279829 ~ 11302003 (+) True pard6b
XR_003403205.1 other upstream 127698 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 211908 10872029 ~ 10912533 (+) False atp2b3b
TU299368 other upstream 273096 10848851 ~ 10851345 (+) False b4galt3
XR_004579736.1 other upstream 785236 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2498579 8621005 ~ 8625862 (+) False LOC113530359
TU299671 other downstream 7799 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 36217 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 43981 11267611 ~ 11267683 (+) True trnaf-gaa_28
XR_003403199.2 other downstream 168962 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other downstream 176406 11400036 ~ 11415449 (+) False wu:fa11c10

Expression Profile