RNA id: XM_026921277.2


Basic Information

Item Value
RNA id XM_026921277.2
length 2867
RNA type mRNA
GC content 0.42
exon number 6
gene id tspan31
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20719865 ~ 20729933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTCTgatttacccacaatgcactgtgaagcgctgcTCGCAGTGTTGCCGAGTGGCGCCTCTCTGTAGTCTGTGGATGGTTTGTGGCTTTGGCAGGTTGGAGTAAGCATCCTGTTAGCTCGGTGACTGTAACAGTTAGCACGGAGCAGCTCAGTGACTAGCTCACAGCGGGGAGAAGAGGAGCTGTAGACTGTAGATTAAATGCCTCAGGGTTCACCATGGTGTGTGGAGGATTTACCTGCTCGAAAAATGCGCTTTGCGCTCTCAACGTCGTTTACATGTTGGTGGGGCTGCTCCTGATTGGTGTAGCAGCATGGGGGAAGGGCTTCGGGATCGTGTCCAGTATACACATCATTGGAGGCGTGATTGCTGTGGGCTTTTTCCTGCTGCTCATCGCCATTGTGGGCCTCATCGGAGCCGTCCATCACCACCAAGTCATGCTGTTCTTTTACATGGTTATTCTGTTCATTGTGTTCCTCTTCCAGTTTGGTGTGTCCTGCTCTTGTCTGGCCATGAACCAGGATCAGCAGGAGCAGTTGATGACCTCCACTTGGAGTATGATGAGCAATAAGACCAGGGTAGATTTGGAGAAGAAGCTGGACTGCTGTGGCCTGTTCAACAGCACTGCAGACCACCATGAGTTCGATACTGACCGGGCGTTGTGTGAAGCTAACTGTTTAAACACTCAGAATTGCTTAACGTGTGGTCAGAAAATGCTGCAGCATGCGTCCGAGGCCCTGAGAATTCTGGGTGGTGTGGGTCTCTTCTTCAGCTTCACTGAGatTTTAGGAGTTTGGCTGGCCATGCGCTACAGGAACCAGAAAGACCCCCGGGCAAACCCCAGCGCATTCTTATAGTCTCCCAGCCTCCTCCGTGTCCCACAGTGCAGCATCGCAGATTCCTCTTCCCTTTGCACACCCGGAGGCACTCAGGCATTCAGCATGGACTTCAGACTGAACGCTGACATGTTGCTCTCTACAAACCATCTCACTGATTTTATGGCACCAAGAGCTAAAGAGCCCATTTAAAGAaaattctcttttctctctagaatctggtcattttttttcttacatagtGAAAACAAAAGCTGGACGTCTCATGAATGATAGGATGATGTTCGGTATTTATGTCTAGATCTCCAGTCCCATGGTGTGACCTACATCATGACCCCTCCCATCCTTGATTTGAGAAAAAGTGTCCTGGACAGAGATTCAGCATTAATATCTGCATGCTTATAGCCATTACTACAGCTGGTCCACTCTGTTATACTCCACCCGGCAGATCCTCAGTCATTATTGTGCTCCATATAGTTTTACCATTGTGGGCTTTTAGTGTCAGTGAAGCAGGTAGTTCATAGATTTTTATGTGAGCTGGTCAAGGTGTGACATCTGTGATACACGGCAAACTTTACTTCCTGCTCCTTTCAGATGTTTCTTGCTAATGTGAGTTGTTGTTACAGATGTACGATGTGAGAGTGCTAGTTGAGGAATTAGGATTTTAGTTCAATATGTTGTGTAACTGAGCCATGCAGAAGCCAGCAGACTGCAGCCCTGATGTTGTGTAAATACACGTGTCTCCGTGACGGGTTGCGTTTCTCATACATACACGTTTCATTTGCTTCTCGCTGAGGTACTACCCGCACTGGACCTTTAACACACGTTTCTTGGTATTACTCTCAGATATTGTGTTTTTGCAATATAGTGAATTACAGACTCGCTTTTTTGTGCTATAACCTGTGGGCAAAGTTCTTCCAGTGCCATCACTTTAATCCAGGTGTCTCATCTCATTCGCCTCTTAAGTCAATATTAGAgtgtgtacattttttcataatgaattttttttaatgttttgtcaAGTTCTCTATAACACTTGTTTGTCAAATAAGTATTAGTTCTACATCTTTGTTACTGTTATTTCTTGAAAAAGATTCTGGTTAGCTCTCAATTTCTCTCACTTTTATGCCTCCGCCACTAGGCGGTGTACAAATTTGTAGCATGTTGGCGACGGAGGCACTGCCATccgagttctacttgtttattttctgttttatttttgccatTCTACTTCACACTTTCATTGTTTGCACCATTTCTCCTTTTGCATTTAAAAGTATTAAGGTTAAGGCCATTCAGGTTTGTAAGTTATTTGTATGTACTGTGTTCTAAATAATTATAACTCTGCTAATCTTACTTTCTTTTTGCTAAGTTTTCTTTCATCTGTTTAATCATTCTTCACACCTTCagtcttaacttttttttcGTACTGATTCagtccaggttttttttttcttcaaaatctCCTCTTTAAGTCTCATTTCACTTCCGATAACTAGGATGCACTGAATTTTCACaatgcatattaatattattgtgtaTATGTGCTAAAGGTCATTGGAGTACTAGTATTGTGGCTGTTTTGCCAAATATTCAGAATGTTTCTGTGgccatttcttttctctcattatttaatttattgccTTTATATAAGCAGGCCATGTTCTCTTTCATTATTCTCACAACTCTGTATGCACCTGCAACTCTTTTCCCGGATGTTCCTTGTATTTTTGGACCTGATTTTTTCCAATTAAAACATCTTGGAGCAAAATTTGGAAAACTGCCATGTGCCCCATTTTAAAGGAAAGTGCTTGAATGAAGTAAAGATTGAAGTTTTCTTTATTCATATCCATTTATTTTGTTCTATAGTGCACTTTTCTGTACAGAGCTACCAATAAATAGATCCACTTACATGATCTGTAAAGTGCTTTGGCCCAACTGATGAGCAGCGATATTCATGTGTTAAGTTCTAACAATTCCAACAACTGAACAAATTCAAAAGATTTCAAATAAATCACCACACTAACTCTC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579729.1 lncRNA upstream 7907 20708115 ~ 20711958 (+) True LOC117599266
XR_004579728.1 lncRNA upstream 20197 20696985 ~ 20699668 (+) True LOC117599265
TU305792 lncRNA upstream 38927 20663682 ~ 20680938 (+) True G258273
TU305646 lncRNA upstream 62798 20611541 ~ 20657067 (+) True G258162
TU305640 lncRNA upstream 143076 20567790 ~ 20576789 (+) True G258156
TU305794 lncRNA downstream 24759 20754692 ~ 20756538 (+) True G258275
TU305900 lncRNA downstream 56309 20786242 ~ 20790145 (+) True G258362
TU305939 lncRNA downstream 173214 20903147 ~ 20907459 (+) False ubxn10
XR_004579744.1 lncRNA downstream 178883 20908816 ~ 20911082 (+) True LOC117599282
TU305997 lncRNA downstream 245965 20975898 ~ 20976359 (+) True G258439
XM_026920339.2 mRNA upstream 28251 20689186 ~ 20691614 (+) True LOC113530407
XM_026921045.2 mRNA upstream 33087 20684365 ~ 20686778 (+) True LOC113530755
XM_026921162.2 mRNA upstream 39795 20668113 ~ 20680070 (+) True pip4k2ca
XM_026920287.2 mRNA upstream 53808 20661406 ~ 20666057 (+) True igfbp6b
XM_034311778.1 mRNA upstream 109152 20596806 ~ 20610713 (+) False lima1a
XM_034311607.1 mRNA downstream 7811 20737744 ~ 20751871 (+) True march9
XM_034312195.1 mRNA downstream 153759 20883692 ~ 20886509 (+) False LOC113530777
XM_026921092.2 mRNA downstream 153931 20883864 ~ 20886509 (+) True LOC113530777
XM_026920955.2 mRNA downstream 170189 20900122 ~ 20902771 (+) True cptp
XM_034312060.1 mRNA downstream 173172 20903105 ~ 20905396 (+) True ubxn10
XR_003403172.2 other upstream 205670 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 321151 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1240970 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1686877 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1808151 18879568 ~ 18911714 (+) False fmnl3
XR_004579743.1 other downstream 173172 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 173214 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 498387 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 808321 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1581873 22311806 ~ 22311888 (+) True trnal-uaa_2

Expression Profile