RNA id: XM_026921280.2


Basic Information

Item Value
RNA id XM_026921280.2
length 2633
RNA type mRNA
GC content 0.46
exon number 13
gene id rcc2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9986582 ~ 9997859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTTACTTTATTTAAAGCCCATGTGTTATGTGATTTTGGTGGATCATCTGTACATTCACGGCTTTAAAAGTTCTATGGCTACGTCTGAGCATTTCCCATATAGTTAGCTGCATAGTTAGGTTTGAACAAAAACCAAGCGAGAGCATCAGCATAGACCTCCTTTTGGCAAGCCAGACCCTTTATCGAGTCAATCAGTTTAATCACCGGACTCTTTCAGTCAGCTTTTTCAGTTACTATGCCACGCAAGAAGGTGACTGATGTCTCTGGAAATGGTGGactgaagagaaagagagccaGCGGCAAAAAGAAAGAGCGAGAGTTCAGCAGCGACGACGAGTTTGAAGATTATgagcaagaaaacacaaagaaaccCGGCAAGCAAGCCACTAAATCCGGCCTCCAGCCAGTCACTGTGTCTGACGATGTGAAGGAGAAGATTAAACTTGAGGTGCCCACGGTCAAAGGTCAGCTGCTCGTTTTTGGTGCTACTAACTGGGACCTGATTGGCCGAAAAGAGGTGCCAAAGCAGCAAGCTGCTTACAGGAACCTGGGCCAGAATCTGTGGGGTCCTCATCGCTATGGCTGTCTGAATGACGTGATGGTGAGCAGTGTGGTGTCAGGGCCCTGTGCTGCCCACAGCCTGCTCATCACCACCGAAGGCAAACTCTGGAGCTGGGGTCGCAACGATAAGGGCCAGCTGGGCCACGGAGACACCAAGCGGTTGGACGCTCCAAAGCTGGTGGAGGGTTTGGGGGAGGAGGTGATAGTGTCTGCTGCCTGCGGTCGGAACCACACCCTCGCCTTAACAGAAAATGGTACCGTCTACTCATTTGGAGAGAACAAACTTGGGCAGCTTGGTCAGGGTAATCAGACAGATGCAGTCCTGAGCCCAGCTACAATCTTGTACAATGGACAGCCTATAGTTAAAGTGGCATGTGGTGCTGAGTTCAGTATGGTGGTGGACTGTAAGGGCAATATTTACTCTTTCGGGTGTCCGGAGTATGGCCAGCTAGGACATAACTCGGATGGGAAGTTCATAGCTCGAGCCCAGCGTATCGAGTTTGACTGTGAGCTTATCCCACGACGAGTGGCCATTTTCATCGAGAAGACTAAGGATGGCCAGGTGATGCCTGTACCCAACGTCGTGGTGCGGGATGTTGTGTGTGGTGCCAATCACACTCTGGTACTGGACTCGCAGAAGCGTGTTTTCTCCTGGGGTTTTGGGGGCTATGGACGTCTGGGCCACACCGAACAGAAGGATGAGATGGTCCCTCGTTTGGTCAAGCTCTTTGATTTCCCTGGCCGTGGAGCCACCCAGATATACTGTGGATACCAGTGTTCCTTTGCTGTCAGTGAAATGGgtggtCTGTTTTTCTGGGGTGTGACAAATACATCTCGTGAGTCTACCATGTACCCAAAAGCTGTGCAGGACCTATGTGGCTGGAAAATCCGCAGTCTGGCCTGCGGGAAGAGCAGTATTATCATTGCTGCTGATGAGAGCACCATAAGCTGGGGACCATCGCCTACATTTGGAGAATTGGGATATGGAGacaacaagcccaaatcatccaCTACAGCTCAGGAGGTCAAAACTCTGGATGGAGTGTATTCAGAAcagGTGGCAATGGGTTACTCGCACTCGCTGGTTATCGCCCGTCAGGAAACGGATCAGGAAAAGGAGAAACTCAAGAAGCTGCCAGAGTACAATCCACGCACACTGTGATTCAACCAGGTCCTTTCATCAGCGTCATATTCCGCAGAGGCTTCTGATTTTCCACACAGACTCTCTCTGCTCACTAGGTCACCGGTGTAGTCACAGTTTGGTTGGGAtgcaattattaatttattttttttttttcgttttctaGGACTTCAGATTACAAGTTGCAAGATATGTATTAAAATCAATTTGAACCTTGGGGCTTGTAATAAGTGATTCATCTGAGCTGGAAGTCCTTCACAGTGGCTTCACGCACCTGTTTTAATACTTACAGTGTCGGGAGCTGAGAGGGAACACTCATGGCTCTCTCCAAGCACTTAAACTCCATTTGGATTTCTTCTACTCCTCACTTATACATTCCTAAAggaagtttaaaatgtttttgtatttctttttccattaaGTTGGCTGGGAAGAACTGTTGTGTGTCTGCTCTCTTTAAATAATTGGTGCTAAATCATTTTGGGGCAGACCGTTTCAGCTGATGATACATTAGCTGGCATCACTGAAAAGACCAACACTCCATGCTTGTGCCTTTTTAAGTGATCGAATTCAGGCTGTGGATGCTTTGTTGTCCCAAAGATCTTCCGTCACTATGTAATCTGGGACcatggcagtgtgtgtttcGTTTGCAGTCACTTAAGGTAATGTTTTATGTActgtgccattttttttgttttttgttttgtttttcacctgtGCTTAATTGTTGATGTCATTTCCCATGTTTCTCATTCTAGTAAACTACCTGTATTTAAGTTGTCTGACTACAAGATGTCAAAGTAACAGACTCTGCAGGAGAAATCTTTGTGTAATGctcaaaaacttttttgttcagaaaatgtaTGTCCATTAGTATGCCCAAAtgttttcataattttaaataaaggttcATGTTTATGTTGGTAACTG

Function

GO:

id name namespace
GO:0005730 nucleolus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579703.1 lncRNA upstream 39650 9944562 ~ 9946932 (+) True LOC117599238
TU298408 lncRNA upstream 256527 9708095 ~ 9730055 (+) True G252116
TU298391 lncRNA upstream 330189 9654882 ~ 9656393 (+) True G252102
TU298258 lncRNA upstream 442942 9542129 ~ 9543640 (+) True G251988
TU298189 lncRNA upstream 547786 9438560 ~ 9438796 (+) True G251921
TU298668 lncRNA downstream 825 9998684 ~ 10001448 (+) True G252336
TU298760 lncRNA downstream 166849 10164708 ~ 10165255 (+) True G252389
TU298798 lncRNA downstream 168690 10166549 ~ 10166791 (+) True G252422
TU299103 lncRNA downstream 542588 10540447 ~ 10540656 (+) True G252674
TU299104 lncRNA downstream 543411 10541270 ~ 10541479 (+) True G252675
XM_026920748.2 mRNA upstream 66458 9873011 ~ 9920124 (+) True vps13d
XM_026921227.2 mRNA upstream 119505 9856373 ~ 9867077 (+) True lrrc38a
XM_026921102.2 mRNA upstream 138613 9791778 ~ 9847969 (+) True ephb2a
XM_034312162.1 mRNA upstream 138613 9791778 ~ 9847969 (+) False ephb2a
XM_026921025.2 mRNA upstream 257813 9721781 ~ 9728769 (+) False phc2a
XM_026920888.2 mRNA downstream 5827 10003686 ~ 10015983 (+) True rnf207b
XM_026920890.2 mRNA downstream 5827 10003686 ~ 10015983 (+) False rnf207b
XM_026920889.2 mRNA downstream 5917 10003776 ~ 10015983 (+) False rnf207b
XM_026920891.2 mRNA downstream 7524 10005383 ~ 10015983 (+) False rnf207b
XM_026920892.2 mRNA downstream 8187 10006046 ~ 10015983 (+) False rnf207b
TU297603 other upstream 1360720 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 1628482 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 1649083 8312773 ~ 8337499 (+) False atp13a2
XR_004579706.1 other upstream 1649083 8313817 ~ 8337499 (+) False atp13a2
TU297455 other upstream 1745815 8240018 ~ 8240767 (+) False si:ch211-197l9.2
XR_004579736.1 other downstream 294747 10292606 ~ 10339205 (+) False kcnab2b
TU299368 other downstream 850992 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 874170 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 998750 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 1233570 11231429 ~ 11237362 (+) True oard1

Expression Profile