RNA id: XM_026921298.2


Basic Information

Item Value
RNA id XM_026921298.2
length 7118
RNA type mRNA
GC content 0.43
exon number 23
gene id cntn3a.2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14364413 ~ 14440337 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACCTACAAAGATATTATCGATATTATCGATATTATCGGATGAACTCTGTTGTAAAACTGTTCTGGAATGTTCCTGTCAGGTGGTGGCGCTCGCGCtcattgtgtgcgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgtgtagACCGTTTCTCTGGAGCAGCTCGCGAGTGTTTCTGCGCCGTTTTTCCGCCTCTCGCGCACATTTTTCTCCTCTCGAGGCTGAATGAATGTACACGcggaatgtaaatacagaccaGGACAGGGGCGacgtctctctgtctgtctctgtttctctctttctgtggcTAAGTAATTGGCGAAGGGATTGTGAAGCCATCGTTTTGGAGCTGTGGAAACATAAAGGGAGGTCAGGCATTTCTCAGGTCAAACAAACCTACTGGATGCTGGAAATCTCACGCGCCTCcggaagctgaagatgaagttATTATGGAAACCGTTTTTGCTGCTATCAGTCATGGAGTGTCTTACAGATTGtttggattataaatcattccacGGGCCAAAATGGCGGATGGAGCCCAGTGATTTAATGGTGCCTGTTGGTTTACCGGAAGAAGAGGCCACACTCACCTGTGATGCCAAAGGCTTCCCTGCTCCTCAGTACAGGTGGTCACTGAACGGCACACTGATTGATCTGAGGGCTGATAATCGGCGGCGTCTCTCTGGGGGGAATCTGGTGATTAGGAATCTGGACCTTGCAGAGGACGCGGGAATCTACCAGTGCACTGCTTTTAACTCACTAGGAGCCATTCTCAGCAGGAGAGCGAGCCTTCAGTTTGCATACTTGAATTTTAAAACTCAAATGAGAAGTGCTGTGTCAGTGCGGGAGGGCCAAGGAGTAGTTTTACTATGTGGTACACCCATATATGCAGGAGAGCTGCATTTTGCCTGGGTGTTCAACGAGTACCCGTACTTTGTCCAGCAAGACAACAGACGTTTTGTCTCTCAAGAGACTGGGAACCTTTACATCGCTAAAGTAGAGCCTTCGGACGTAGGGAACTACACATGCGTGGTGGTAAATCGCATTACAAAGGTCAAAATGCTGAGCTCTCCCACTCCGCTGGTCCTGAGGACAGATGGTGTGATGGGTGAATATGAGCCTAAAATAGAAGTTCATTTCCCTGACATGGTTCCAGCTGCCAAGGGCTCCATTGTGATACTGGAATGCTTTGCTTTGGGGAACCCAGTGCCTGAAATAACATGGAGAAGGGCTAATGGAGTTCCCTTTCCCAACAAAGTGAAGATGAAGAACTCTAATGTCGTTCTGGAGATTCCCAGTTTCCAACAAGAGGATGCGGGTGGTTACGAGTGTGTGGCAGAGAACAAGATGGGCAGGAACACTGTGAAAGGACGACTCTCCTTCCATGCTAAGCCTCAGTGGGTGCAGACCATGCACGACAGTGCCTTATCCATTGATGAAAGTCTGTTTTGGGAATGTAAAGCCAGTGGAAAACCCAAGCCCTCATACAGCTGGCTAAAGAATGGAGAACTACTTAACACAGAGGACAGGATTCACATAGAGAATGGAGCTCTAACTGTAGTATCAGTCAACCTGTCTGACGCTGGCATGTATCAGTGTGTAGCGGAAAACAAACATGGAATCATTTATTTCAGCGCTGAACTGGTGGTACTTGCTTCACCCCCGGATTTCTCCAGATCCCAAGTGCGAGCACTACTTAAAGCTAAAACTGGCAGCACTGTGACTATGGAGTGTAGGCCCCAGGCTTATCCCCCTCCCATCACATCCTGGAGGAAAGGCAGTGAACAGCTCCAGAGCACAGACAGGATAAGTCTTCTCCCTGATGGAACactaaaaatcataaatgtgaCAAAGACAGATGTGGGCAGCTATACATGCCTGGCTAGAAACCAATTTGGGATGGCAAGCACCACCAGAAGACTATTGGTCACAGATCCGACACGGATCACTCAGGGCCCAGTGGATATGGAGATCATAGTGGGTGAGAGTATCGTGCTGCCATGCCAAATCGCGTGTGATGCCTCTCTGGATGTGTCCTTTTCCTGGGCCTTTAACGGCCAGCTCCTCAACAAACTCGACCCGCACTATGAGCACGTTGGTGGGGGGGTGGCTGGAGATCTAATGATACGCAATATTCAACTGAAGCATGCTGGGAAGTATGTCTGCGTCATCGACACTGATGTAGAAAGTTTGTCTGCCGCTGCCATTTTGATtgtaaaagGTCCCCCTGGAGCTCCGGACAGTGTAACAGTAGAGGAGATCACAGACAGCACAGCGCAGCTCTCCTGGAGGCCTGGCCAAGACAATGGCAGTCCCATCCTCAGCTACATCATCCAGACCAAAACGGCTTTCACTGTGGGATGGCAGGCAGTGAACACAGTACCCGAGGTGATAGATGGGAACACTTTGACTGCTACAGTGGTGGACCTGAACGCGTGGGTGGAGTATGAGTTCCGAGTCCTGGCTAGAAACAGCGTTGGCGTTGGGGAACCAAGCCCAGCCTCACTCAAGACCAGAACCGAGGATGCAGTTCCTGATACAGCACCAGCTAATGTTGGCGGTGGGGGAGGCTCCAAGTCTGAATTGGTAATAACATGGGAGCCTGTGCCTGAGGAGCTGCAGAATGGAGATGGTTTTGGTTACATCATTGCTTTGCGGCTGCTCGGTGAGCTAACATGGACCCATGTCGTGACGTCAGCACCCGGACGCTATGTTTACCGCAATGAGAGCATTGCACCATTTTCTCCTTTCACTGTGAAAGTGGGTGCATACAACGTGAAAGGCCAGGGACCCTTCAGCCCTGTCACCACAGTGTTCTCAGCAGAGGAAGAGCCTAGCAGAATGCCAGAGGGCGTGTGGGCTCGGAGTATTTCTGACACTGAATTTGAAGTGAGCTGGCAGACACTCTCTGACTCTCCTGAAAGAGTTTTGGGTTATGAGGTCATGTACTGGGAAGACGACACTAAGCCAGAGACAATGGGGAAAGTGCGAGTGTCTGCAAATCAGTGCACAGTGAACATAAGTGGCCTGAAGGGGTACACTCAATATTTCCTCACAGTGAGCTCCTTCAACACAGCAGGAACTGGGCCACGCACACCTACCATTAACATCACCACCAAAAAGTCTCCGCCAGGACAGCCGCCAGTGAATGTGGAgtggaatctgattggctcaaAGCTGACTGTCCACTGGGACCCTGTAGTCACCATGGAGATGGAGTCAGAGGTCACTGGGTATAAGGTTTCTTACACAAGGAACAGACATACTGAGATCAACACAGTGACCACTAACGTTACTTCTGTGGAGCTCATCCTCCCTGCCGACGATAATTACATCATTCAGATTTGTGCTCTGAGCGACAGCGGAGATGGCATGCCCACTGAGCCCATCAACATTCACAAACTGAGTATGAGTGTACGGGGTTCAAGAGCGTGGCAACCTACCGCCATCCCCCTGTCCTTGCTTTTTATCATCGCATTAACTGCCATGAGGCCAACTTTGTGAAAAGGACTTTAGTATTGCACAGACTTTGAGTTGATCATGTGTGCTCATTCCTTAGAAATCATGAGAGCAGTGTAttgaaaaattttttaaaactcccAACCCTTCCATATTTCACCTGAGGCATCATGTGCATTTGATGAACCCGACAAGGAAATTCAAAGTTACAggattttgtgtgcatgttatAGTCTCACGACAAAGTGTTTAAATAGACTGAATACATTTAGGTTGTACTTTTTGTACCGTACACGGATGTCATGACTCATATGCACTATTTGCCAGCTGGTCTCTGTGACCCTTGCGGAGAACAAAATGCCTTACTTCCATGTTACATGCCAAAGTAGTTCATGTCTTTTGTCATGTCCTTCACttcttgttgctaagctactgtTTGTCCAAACatgctttttattccttttgatatgaaaatgtaatgttaatcagtgtttttataCAATATTGTTACATATCACTGGCACACCGCAGCTTCTGCGTACccattttacagaatatgattTTTCACTGTGCCTTCTATACAATAGCTGCATATCTTTAATTTAACTTTACATCATCAAGCCTTTACTATTCAGTCTTTCATTATCTTTGAGGATGTAGCAGTGTGTCTTATGATGCTATTTTTTTGGGTTAGTGGAAGCAGTGGCTATGTGTCATGAGCTATCTTACTGGGTTTTGTTAACATGTACAAATATAGCACAGTGTAATATTGAGTTACAGATTTACAATGTATTATTAGCTTATAATGTCTCGTGTCTATAGATGCCATTGGAGTATTAATATAAGCTAATAATATTGTTATTCTCCCAAGCTGCAATAGATCATAGCAACAGAATTGTTAGGGACTTTTAGAGAGAAGAATTTTCCTCTGGTTAGCTAACAGCCTGTAACTTTTTATTCGTATTACTGAAGAAACAGGGCCTCCTTTGGGGCAGATGACTGAGTTGAACTGTGCAAAAGTTGGGTTATTGTACGGTGTGTTGCATAAGTTTTCACCCCTTAAActaaacaaattatttgaaatccaaaaaaacaaatccaggaCAAAATTCTGGAAAATTTCCAATCAGggtttgtttattatatatatatcccaaactttgaaaaTCTCACGGAGGGCTTTgttcagagaagcaaccaagaagCCAAGAGTAAGTGTCAATAGTAACTGTCAGCTGTCAATGATgttaccaccaccatgcttcactataGGGATGGTGTTATCAGGGTGAGGAGTAATGTTGGGTTTCCTCCAAATGTAGTGCTTTATGCCAAGAccaaaatgttatattttggTCTCATTACACCACAGAAATCAAACCTGCCTTTTGGAAAATTTAAAACAGGAGTCCATATGGCTTGCCACTAGGGATGTAACGATGCATTGTGACAAGACGCATCATGATGCAAAAGTGTGACGATGTGCATTGTGGCAAATCAGTATcagtgtttgatttatttaattttattcagtcAAAAATGCACATAGTTTTGCTTTGtgtatgattcagaaataaaatagtcttttcagtcataaattttcttcattataattttgttcagaatattctgagaatcaaatTGAATCAAATCTTGAAGACTGTATCATTAATCGATTTCAGTCGTGTCCGGAGTGTATCATTACACACCTACTTGTCACTTTTCAATAAAACCCAGCTTTGTGAAATGTTTGGGCAgtggttgtcctgtgaacaacTTCTCCCATCTGATCTGTGCATCTTTTCAGCTCCTTCAAAGTTACTATTGGCCTTTTGCCTGCTTCTCTGAATAATGCCCTCTTTACACAGTCACTGACTTTTGATGGATATCCACCTCTAGGCAGAGTCGCTCTTGTGTCATGTTCTTTCcatgttttaataatggatttattaGTGCTCAGCGGGacgttcaaagtttgggatattttctTATAATCAAACCACTGACTTTGTCCTGAACTTGTTCAACTGCTTGCACCAGAGCTTATATATTATttagatttgacatttttggaTTCATGACATAATTCCAATTTAATCATTCCAGTTCCAGGGTGTAGCACTACTATTTTACCTCCTTGGAGAGATAAACAACTGTCTTTGCCTGTGTACACAGTAACAGCTGCTACATTTGTGTTTTCAAGACCAGAATAGCAGGAGGTGTAAACCTGTAGATATAATAAAGGTTTTGGCTAGTTTAGATATCCTGACTGACATTTATCTGGCTCAGTAGTTTAGACATTCAGTCTAACATTTTTCTGGtaaaacacaaaaagcaaaTGACCTGGAAGCACATGAATCTTGTGTTTCAATCTTCACATCAATATTTCTTGTGTTATGTAATGATAAATGCAGTGTCTGATCCATGCAGTAATTCAGGAATGATTAAATCATCCTAAAATATTGCTGTGCAGCCCACCGGGGTTTTGACTGAACAGGCGATGGTGTATATTCTGGTTATGAGAGCAGCAGAAGGAAGATGGATGTGATGGATGTGAGCTGAACAATGCACCAAGCTATAATAGACCAGTCCAGACAGAGCTGATGAAAGATATTTAGCTCTTTCCCCCTCCTTTTATTTCAACCGCAGACATTCCCAGTGTCCTCTTGAGAAGACATTGGTCATGTGAAGTGCAGCATTTTGCGGATGTCTTTGCCTTTATCATTGATTTCGATTTTAAAGTCAAATGAAAATCAGCACAAAAGTGAATGCAAGTGAACATTCCCTCTTCTTTGGCCTTCTTTGAGTAGAAGAAAGTGTTATTCTTACAGATTTGTTGTGCAGATGTAAATGCCACATTGTGATCTGTCAAGGCTGTCAGAAACCTTTGTCCTGGATTCTGATTATGGCTGTTCACATTATAGGTGCATGATGCCAGTTATGGTTTAGGGATgacttttccttctctttctcattttttagCCAGGTATGTGTTGAATTGTTTATGTGAGAGAaaatatgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcgttgtgttgtgtagttcaTAATCAACAGCACACATCATAATGGTTTAAAGAATGACCTTGAGCCCTTtgtgttattcatttcagtttttgaaaCCTGATGGCTATATCAGACCTTTTTTGTTTCATGGCCTCCTTTTTAGTCTTTGTAATggaaaaagaagcaaagaagTTTTCGAATTTTAAGTGACGCAAAATATGGCTATATTCATTATATACCATATTCCATGTTCATTAAAACATTCAGGAAAGAATGCGACAACTTGAAATAtgctttttgtttgctttttaaaaagatattagCATGTGTGCTTTTGTCTGTTGTAGGCGCACATTTTGTCAAGCGTGTAAACATTTGACCAACTGTTTTGATACGGCTGTATAACTGGAATGTCTTTAATCTCTGCGAGATGACATGTTTGATCAGGACAATATTTTCATATTGAAAAGCGATTCCCACATCCTGTACAGTAGCCGTGCATGTTTCCAAttgttttatgtgtgtatgtagcttttgggttttttttttaaacaactgtaATAAAAACTATTTGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301465 lncRNA upstream 295950 14068259 ~ 14068463 (+) True G254653
TU301453 lncRNA upstream 308451 14055216 ~ 14055962 (+) True G254644
TU301436 lncRNA upstream 332080 14032116 ~ 14032333 (+) True G254633
TU301262 lncRNA upstream 531722 13827684 ~ 13832691 (+) True G254472
XR_003403196.2 lncRNA upstream 637031 13723365 ~ 13727382 (+) True LOC113530938
TU301817 lncRNA downstream 2852 14443189 ~ 14477709 (+) True G254967
TU301818 lncRNA downstream 32334 14472671 ~ 14477709 (+) False G254967
TU301815 lncRNA downstream 166742 14607079 ~ 14615274 (+) True G254966
TU301850 lncRNA downstream 181980 14622317 ~ 14673952 (+) False G254991
TU301852 lncRNA downstream 229467 14669804 ~ 14673952 (+) True G254991
XM_034312072.1 mRNA upstream 100232 14204849 ~ 14264181 (+) True si:dkey-178k16.1
XM_034312074.1 mRNA upstream 100232 14204849 ~ 14264181 (+) False si:dkey-178k16.1
XM_034312075.1 mRNA upstream 100232 14204849 ~ 14264181 (+) False si:dkey-178k16.1
XM_034312073.1 mRNA upstream 100232 14204849 ~ 14264181 (+) False si:dkey-178k16.1
XM_026920996.2 mRNA upstream 100232 14204849 ~ 14264181 (+) False si:dkey-178k16.1
XM_026921303.2 mRNA downstream 50839 14491176 ~ 14508430 (+) False rybpa
XM_034312159.1 mRNA downstream 50988 14491325 ~ 14508430 (+) True rybpa
XM_034312176.1 mRNA downstream 79922 14520259 ~ 14528718 (+) True eif4e3
XM_034311901.1 mRNA downstream 90498 14530835 ~ 14574310 (+) True foxp1a
XM_026921208.2 mRNA downstream 90499 14530836 ~ 14574310 (+) False foxp1a
TU301462 other upstream 292197 14070269 ~ 14072216 (+) True wfdc2
TU301463 other upstream 292197 14070269 ~ 14072216 (+) False wfdc2
XR_004579688.1 other upstream 292255 14070228 ~ 14072158 (+) False wfdc2
XR_003403145.2 other upstream 1513418 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1979839 12366743 ~ 12384574 (+) False LOC113530266
TU301848 other downstream 229467 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 229467 14669804 ~ 14673952 (+) False G254991
TU302131 other downstream 676775 15117112 ~ 15120212 (+) True rps21
TU302132 other downstream 676775 15117112 ~ 15167668 (+) False rps21
XR_004579698.1 other downstream 1770313 16210650 ~ 16229406 (+) False LOC113530889

Expression Profile