RNA id: XR_004579701.1


Basic Information

Item Value
RNA id XR_004579701.1
length 2792
RNA type misc_RNA
GC content 0.53
exon number 6
gene id si:ch1073-157b13.1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24787690 ~ 24795423 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCGTGGGTACCTCAGCAGTGAGATACAGAAGCCTTGAAGGCTCAGAAGCgtacacattttcacacatttgatagaaaacatagaaaaataatctCGCTAAGGTTCACGCACACACCATGCCGAGTCCTAACCGTGCTCGAAAGGTTTGAGAAATGCGTGTTTTTTTGGAAGGGGCGTCACAGAATTattttttggtgtatttttttgttttgttttggggttCAAGGGTCACGGGATACAAACAAGTCCGAGACGCTCCACTGCAGTGCGACTGCTTCAGCCACAGCTACAGTAACATGGGAACATCTGTGAACCCATAAGCAGACAAGTTTTCTGCAAGTTTACAAAAGCAAACTTTATCACCACGACAGTTTTGGACGCCTTTCTCTCCGTCTTGCCCATGCATGCAGAATTGAGCAATAGAAGATGATTGAGATGTCCATAGACAAAGAAACTGTCTTAACAGGAGATGGAGCGGCGGCCATTTTGAACCCGCCACCTTCCCAGAACCTAGCGGGAAGCGTCAAGACCCTGAGTCCGTCCTCTTTGGCGCCTGTCAGTATTGGCGCTCCGTTCATGGCTAACATGGTGCTCGCAGAAGTGCCTGCTAACCCCGCTTTGACAGAAGAGACGGGACACGACGAGGAAGTCGCCGAGACGATGCAAGCGAAAGGAAACAATAAGCTCTTACAAGCGAAAAATGGTATACAGTCCCAAGCCGGGTCTCAGAAACTCGGCAAACGCCGGTACAGCATGAGCGCTGGCTTTAAGCATCCCGGATTTAGCAAGCGCAGACGGAGAGCTAACTCCGAGTGCGACCCGGTGCTGCCCAGCAACTTCCTGTTGGGCGGAAACATCTTTGACCCTCTGAATCTCAACAGCCTATTGGACGAGGAGGTGAACCGGGCGCTGAACGCCGAGACGCCCAAATCGTCACCGCTTCCGTCCAAGAGCAGGGAGCCGGTCGAGATCCTGATCCCCAGAGACATCACTGACCCACTGAACCTCAGCGGCAAGGGCGGAAACGCCAACGGGGGCGTCCTGGTGTCACCCTTAAAGAAGCGGCGCCATAGAAACAGGCACCACGGTGGCAGTGGCGGCCATCTTGAACCCGCAGAGTCTGAAAAGGCAAAGGGCGCCGAGGAAGAGGGTGCGTTGTTTCCTGCACACCATTTACCAGAGGAGCAAGTCGAAGAGTCGCCGCGACCCTACGAACTCAACACGACCATCAACTGCCGCGATGAAGTGGTCCCGCCCATACTGCCACGGCGCCGATCCACAAACTCCGCTCCTCAGACAGGAAGTAGCAGCTCCACCGCGCAGCCATCAAAACACAGAAAGCGCCGACGAACAGTCAGCCGTTCGGACCGCCTTTCGATCACGCCGACTCCCACCAATAAGCAGCTGAGTTTAGACGGAGGGCGGAGTCAAACATTTCACACACCCATTGTGGGTGGAACCGCAGGAAGCCATCTTGAAGCAAACCATCACGCATCAGCACAAAAACATCAGCGCAAACCGAGACGCCAGTTCCATTATGGCACCTACAGCCGTTGCTACGGTTACCGGACACCGAGTCTGAACGTGGATCCTCGTCTGGCGGCGTTCCGGCCCGAATGGTTCCGTGGGAAAAAAGTCCTGGACATCGGATGCAACGTGGGTCACATGACTCTCGCCATCGCTAAGAACTGGAGTCCTGCCCACATCCTGGGCTTGGATATCGACGGCGGTGTGGTGCACGCGGCACGGCAGAACCTCCGCCACTTCCTGTCTGAGctgcagaaacaggaagtgaggcaagATGGGGATGCAGAAGAGAAACATGGAGAGGTGGAGACGTTGCGGACGTTCCCTGTTTCTTTCAGACTATGTAGGGGGCCAATTGCTGCTCCTCCCTTACTGCCTCCTGCCCCCGGGGTGTTCCCTAACAATGTGTCCTTCATGAAGggGAACTACTTGCCGGACAGTGATGAGGTAATTATGTCACAGTGTGCGGAGTATGATGTCATCGTGTGTCTGAACGTGACGAGGTGGGTTCAGCTGAACTGGGGAGACGTCGGGCTTCAGCGACTCTTCAGGCGCGTTTACGCTCACCTGAACCCCGGAGGAGCTTTTATCCTCCAGCCCCAGCCATGGAGCTCCTACAGCAAGAGGAAGAGACTGACgGAAACCACCCACAGGAACTACAACAGCATTCGGCTCAAACCGGACCAGTTCAGCTCGTACCTCACCGCCGAGGTGGGATTCACCAGCTACGAGCTCATCAGCACCACCAGGAGCTGCCCTAAAGGACCCCAGAGGCCAATCTATCTGTTCCACAAAGGCCCCGCCTCCAGCAGGAAGTCATCCACCAGGAGAGGAAGTGACACGCAAGAAGAGGAACGGGAGACGAAGTGAATGTTTACGCTGCGGCGCTGCTTTAATTAGAGATGTGATCGGTTTCACTGGACTCTGTTCTGAAAGAGCCGCCGCCACCGATTCAGCCTCGATACGGAGGAGCtgaactctctcacacacacacaccacccctaacacacacacacacacacacacacacacacacacacacacacaccagcacccTCAGTTCCATCAAGTGGTCACAAGGGGATCACTCATGAATCAGTTAAtctcaaacacaacacacactcacacacacacagatggactattaatctttttaataaaagttgcTATGTCTTCTTTCTAACAACTCAACACctgtttatattgtacattttagggaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309036 lncRNA downstream 57147 24730292 ~ 24730543 (-) True G260897
TU309034 lncRNA downstream 59321 24725850 ~ 24728369 (-) True G260895
TU309033 lncRNA downstream 62313 24724222 ~ 24725377 (-) True G260894
TU309007 lncRNA downstream 86647 24681825 ~ 24701043 (-) True G260873
TU309005 lncRNA downstream 89266 24697969 ~ 24698424 (-) True G260871
TU309075 lncRNA upstream 49130 24844027 ~ 24864890 (-) True G260921
TU309098 lncRNA upstream 75817 24870714 ~ 24873747 (-) True G260942
TU309082 lncRNA upstream 166159 24961056 ~ 24964895 (-) False nfxl1
TU309120 lncRNA upstream 179818 24974715 ~ 24975307 (-) True G260962
TU309132 lncRNA upstream 247254 25042151 ~ 25042595 (-) False G260972
XM_034312219.1 mRNA downstream 5646 24775086 ~ 24782044 (-) True LOC117599302
XM_034312218.1 mRNA downstream 13037 24771260 ~ 24774653 (-) True LOC113530888
XM_034312203.1 mRNA downstream 22617 24745883 ~ 24765073 (-) False LOC113530579
XM_034312202.1 mRNA downstream 26995 24745883 ~ 24760695 (-) True LOC113530579
XM_026921395.2 mRNA downstream 42465 24734614 ~ 24745225 (-) True cfi
XM_026911800.2 mRNA upstream 33635 24828532 ~ 24836728 (-) True si:ch73-106g13.1
XM_026911797.2 mRNA upstream 41935 24836832 ~ 24851867 (-) False tec
XM_026911798.2 mRNA upstream 41935 24836832 ~ 24851867 (-) True tec
XM_034312160.1 mRNA upstream 41935 24836832 ~ 24848862 (-) False tec
XM_034311617.1 mRNA upstream 93837 24888734 ~ 24898675 (-) True LOC113525311
XR_004579755.1 other downstream 279223 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 279357 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 1023527 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1547344 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 2338263 22446030 ~ 22449427 (-) True G259306
TU309105 other upstream 86061 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 189562 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 195679 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 245894 25040791 ~ 25042595 (-) True G260972
TU309138 other upstream 281923 25076820 ~ 25079027 (-) False LOC117599229

Expression Profile