RNA id: XM_034312159.1


Basic Information

Item Value
RNA id XM_034312159.1
length 3318
RNA type mRNA
GC content 0.43
exon number 5
gene id rybpa
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14491176 ~ 14508430 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAACCGTGTTTCAGATGCATTGTGCAGTGCCTGCGCGAGGACTCGGGTTGAGATGGAGCCGTTTTTGCTGAGCgtgttaaagagagagaaaaagcgcAGCAATGGCGGAGCCTTATTCCCGGCTCTCCAGATTTAGACAAAGGAATTCAGGAGACGCCTCGTCTCCTCGGCCAAAAAGACACGCCAAGCCCTGTGCAGACGACGGATTTTGGGACTGTAGTGTCTGCACGTTCCGCAACAGCGCCGAGGCGTTCAAATGCAGCATGTGTGATGTGCGCAAAGGCACGTCCACAAGAAAACCTCGCCTGAACTCGCAGCTTGTGGCGCAACAAGTAGCGCAGCAGTACGCCACCCCTCCCCCAGCTAAGAAAGACAGGAGGGAGCGCACAGAGCGAGACGATCACTACGACATAGACAATTCAGACTCGGACAGGCCAAGCGTAGACAACTCTGACTCGGACAGACTGGGCCCAGACAGCAGTCACTTGgagagaggacacacacataaGGACAGGAGACAGGAGCGCATTGGATTGGACAAACATCAGCTAGTACAAACGTCAGTGGAAAGGAGGCCTGAGAGAGCAGGTCTAAACCAGGAACTGCACAGAGAACTTATGGATAAAGTTCATTCACACAGGCCACACATGGAAAAAGACCATCACACAGGAGCATCCGGGACACAAGTGGCCGAGAAGGAGGACATGAAGAAAGGCAAAGTAGAAAAGGCAATGGTGGATAAGCACAAAGAGAGGGAAAAGTTGCCTGGTTCCAACAAAAAGCCCACTGCCAAGAAGATGAAACCCAAGATCCTTAATAAAGGTCCTCCTAGTGAAAGAAGCAGCATGAAATCTGGCAAATCAGCCACTAAGAGCAACAAATCTATTATTTCAAGGCCTAAGCTGAAGAACATAGACCGAAGCTCAGCTCAGCAGCTGGCCATAACAGTGGGCAACGTTACAGTCATCATCACAGACTTTAAGGAGAAGACAcgctcctcctccacctcttcATCCACTGCCACTTCCAGCAGCGGCAGCTCCGAACAGCAACACCTGAGCTCCAGTTCGGAGAGTACGGACAGGGGGTCATCCCGTGCCTCTACCCCACGCAGAGACCTTACTTCTGGACACAATGAGCTCCTTTGAGGCTGCTGGAAGTCAGGAATCCTCAAACACATTGATAATGCACAGATAGAACCTTTACACTTAAAAGGATGAAGGATCATTATCATGCATGGGCACTGTTTCCATCTTGATATTTTATGGCAAGATGTGCCATGTGTTTCAATACTGTTTTTAACACATTCACCTCAACTCCCCACACAACTCACAAGTGTGTATCACCTGCATCACATGCGTGACCACCTGGAGCACAAGATGAAGAGGATGTAGCACATCTTGGCTAAAGCttcgctatatggccaaaagtttgtggacacgtgaccatcacacccatatgtggttcttccccaaactgttgccacaaagttggaagcacacaattccgtaggatgtttttgtatgctgtaaaatTACAGCTTCTCTTCACTGgtactaagaggcccaaacctgctccagcatgacaatgcccctgtgcacaaagtgaggtccatgaagacacggGTTGCCAAGGTTGGAATTTAAGatctcgagtggcctgcacagacccctgacctcaaccccaccgaacacctttggggtgaattggaacaccgactgcaccccaggcctcctcaccgaCATCAGTgccagacctcactaatgctcttgtggctgaatgggcaaatccccacagccacactccaaaatgtagtggaaagccttcccagaagaagtTATTGTGACTGCAAAGggggggactacatctggaataggatgttcagcaagcacatatgcttgtgatggtcaggtgtccacatatttttggccatatagtgtatttcctTGATTTGTAACAGTGTATTTCCATTGAACTTTGTACAGACATATAGTCATACATGCTAGCAAATTAGCCAATGGTGTGCtaacttttaattattattattatatgcataTTTTTGCTGTGTAGAAAAGGAAATTGTATTAAATCTCCTAAAGTCTACAGTAAAGTTGATGGATTCCTTGGGCCTTCAAGGAGTCAGAGTCTTTTTTAACATTCCCCTGAGCCAGTAATGTACTGGAACAGCCCTTGAGATGGTGACAGTGATTTTAGTTTTAAACAGTATTGAAATGCATGGATGGTTTTCACACTATTTCCCAGAGAGAACTGTAGAGTCAAATGTTGTGGAGTCAGCATTTTTAAGTGGTAGAAATTGAAACCCTCTGTATGTTTTGAGCCTTAGATCTCCAGTTTACATAATTGTTCTCTGTTATGAAAATGGCCTGTATGATTCTCCAACACTGACTTATCCCCATAACACATTCTGACACTGTATAGGTCAGATGAAGGTGTCACAGTTGTGGGAAAACCATGTAGAACCtcccagagaaaaaaaaatgtgtacttttgatttattaaattaatgatTGTATTTATAAACTGTGATAAGAACAAATAATCTAGTAGATGGCCGAACTGGAACCGCAAACATGAACATACTAAAAGACTGTTGTTCTAGGTGCTAACATACATTAATAAAGGTGATGGATGGATTGGAAAACACCTATGAATATTTTGAAACATGATTATCAGCATTTGAAAAATATGTTCAATGAAATCTGTTCAGTAAAGGCCATTTTTATATTGATAGATGTTATGTATTGTCAGTCTATCATTGATCAAAACCCATATGATCTGTTTGAGAACCATTCTTGTAAATGCTACTGCTAAATGATGTTACCAAGCTTTTTACTTGCCACAAGGACATATTCTTTTATTAAGTCTCTGTGAGCCAAGTAAGCAGCAAAACTTCATCCAATTCATTGCTGCCTCAAAGCATTATGAAACTGTTGATGTGATCTTTATAGATGAAATGTCTTtaattagtgtatttattttgtgcaaGCAATTCTGTTCTTGTGTATGATCGGTAACCCTAATTTACTATGTAAAGATGGTTACATATAAGGAATACTTGTCATAATATAGATTAACACTATCTGTGGTGTATTGAGTATCTGGCACAGTTACTTAGTTATTTTGGCATCTTACTGCAGTtgttgtgtgttaaaacagCAGTTATTGCATACACAGTTTCTCTCAatgctgcttgttttttttttttttttttttccatctgctCAGTCTGAAGTAAATTCTGCTTGGCAAATTCTGCTTGTAGCATAgctttcatttcaaataaaagcatttgtttA

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301817 lncRNA upstream 13616 14443189 ~ 14477709 (+) True G254967
TU301818 lncRNA upstream 13616 14472671 ~ 14477709 (+) False G254967
TU301465 lncRNA upstream 422862 14068259 ~ 14068463 (+) True G254653
TU301453 lncRNA upstream 435363 14055216 ~ 14055962 (+) True G254644
TU301436 lncRNA upstream 458992 14032116 ~ 14032333 (+) True G254633
TU301815 lncRNA downstream 98649 14607079 ~ 14615274 (+) True G254966
TU301850 lncRNA downstream 113887 14622317 ~ 14673952 (+) False G254991
TU301852 lncRNA downstream 161374 14669804 ~ 14673952 (+) True G254991
TU301853 lncRNA downstream 161374 14669804 ~ 14673952 (+) False G254991
TU301928 lncRNA downstream 196838 14705268 ~ 14705536 (+) True G255057
XM_026921298.2 mRNA upstream 50988 14364413 ~ 14440337 (+) True cntn3a.2
XM_026921299.2 mRNA upstream 50988 14364917 ~ 14440337 (+) False cntn3a.2
XM_026920996.2 mRNA upstream 227144 14204849 ~ 14264181 (+) False si:dkey-178k16.1
XM_034312176.1 mRNA downstream 11829 14520259 ~ 14528718 (+) True eif4e3
XM_034311901.1 mRNA downstream 22405 14530835 ~ 14574310 (+) True foxp1a
XM_026921208.2 mRNA downstream 22406 14530836 ~ 14574310 (+) False foxp1a
XM_026921210.2 mRNA downstream 22406 14530836 ~ 14574310 (+) False foxp1a
XM_034311903.1 mRNA downstream 22781 14531211 ~ 14574310 (+) False foxp1a
TU301462 other upstream 419109 14070269 ~ 14072216 (+) True wfdc2
TU301463 other upstream 419109 14070269 ~ 14072216 (+) False wfdc2
XR_004579688.1 other upstream 419167 14070228 ~ 14072158 (+) False wfdc2
XR_003403145.2 other upstream 1640330 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 2106751 12366743 ~ 12384574 (+) False LOC113530266
TU301848 other downstream 161374 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 161374 14669804 ~ 14673952 (+) False G254991
TU302131 other downstream 608682 15117112 ~ 15120212 (+) True rps21
TU302132 other downstream 608682 15117112 ~ 15167668 (+) False rps21
XR_004579698.1 other downstream 1702220 16210650 ~ 16229406 (+) False LOC113530889

Expression Profile