RNA id: XM_026921316.2


Basic Information

Item Value
RNA id XM_026921316.2
length 2845
RNA type mRNA
GC content 0.41
exon number 7
gene id sdf4
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20037421 ~ 20043667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGAGCGCGAGCCGCCGGCGGCCACGTCAACAGGAAGTAGCCGAGCTGTAAACTTCACGATGCGATGTGTTTAACGGAGCTAGTGGAAGGCTGACAGTCATAACATAACCGTGGTTCGTGTTCAGTGCTGTATTTCCGCTCCGTCTCCGTTAAAGCAGCCGGTCCAGTGAGCAGTGTCTCCAGCTGAGGTGTAAGCTGGCAGTCATGTCCAGTACAAGAGGAGTTTGGACAAACCACCATGGGGCGGCGTTCTTTGCCCTGTTTGTGATTTTGATCATGGATGTCCAAGCACGCCCCGCTAACATATCGGTCCACAGAAACAAACATGCCACCGGTAAGGAGGACAACGAGATCCTTCCTCCTGACCACCTAAATGGTGTCAAAATGGAAATGGATGGCCACCTGAACAAGGACTTCCACCAAGAAGTGTTTCTGGGAAAAGAGATGGAGGAGTTTGATGAAGACTCTGAGCCCAGGAAGAACCGCAAGAAATTAATTGAAATTTTTAGCAAAGTTGATTTCAATAAGGACAGAAGTGTCAGCGCTAAAGAGCTTCAACGCTGGATCATGGAGAAAACAGAAGAGCACTTCCAAGAGGCGGTGAAGGAGAACAAACTTAATTTCCGTGCTGTAGATCCAGATGGAGATGGACATGTGACATGGGATGAGTACCGGGTGAAGTTTTTAGCCAGCAAAGGCTTCAATGAGAAGGAGGTGGCTGagaagataaaaaataatgaagagcTTAAAGTGGATGAGGAGACCCAGGAGATACTGGAAAGTCTGAAGGATCGCTGGTTCCAGGCCGATAACCCTCCAGCTGACCAGCTGCTGAACGAGGAAGagtttctctccttccttcatCCAGAGCACAGCAGAGGCATGCTCAAATACATGGTCAAGGAGATCATCAGAGACCTGGATCAAGATGGAGACAAAGAACTGACGCTGTCCGAGTTCATCTCTCTGCCCATGGGCACAGTGGAGAACCAGCAGGGCCAGGACATTGATGACGACTGGGTTCGTGAGCGCAAGAAGGAGTTTGAGGAGGTCATCGATGCCAACCACAACGGCATTGTCACCATGGAAGAGCTCGAGGAATACATGGATCCCATGAATGAGTACAACGCTCTTAATGAGGCCAAGCAGATGATCGCTGTTGCCGACGAGAACCAGAACCACAACTTAGAACTGGAAGAGATCCTTAAATACAGCGAGTACTTTACCGGCAGCAAGTTCATGGACTACGCCCGCAACGTACATGAGGAGTTCTAGTACTTTCTCCCCAATTCTATAAAGAGAAAAAACCATATTCTGCCCAACAGCTATACAGGCAGCCGTATGGTACACACGTTCCTTAGGATGGCATATGGGTTTGCCTCccagggatctgattggctctttGGAGAGggagtgtatgtttgtgtgtgtttgtatggaTGCTTGAAGCAGCATCTAGAATGTTAATGTCTCAGTGTAAATCATTCAGAATTTTCTGATGTTTCTCTTTAATATTTTCACACACCATCAGAATCTGCCTTCTGTTCGAGCTGCTTTTGCTGAAGTGTTAATTAATGAggttaatattttatatgagGAGatttgaggggggaaaaaaatcattgcttTGAGTTATAACCAGGTCTTTTGCTGCCTCATTGTATAGAGAGATAAGACTTGTAAAAAATAGATGAAGCCTTCGtgagaaatgtaaataatattattgaAAAAATGATATGATATATTAACATTTGATTTTTACAAGAAGCTCTTGAGCTGTGGACACCTGCTGTTTCCGGAGTTCAAGGGCTAACACGAATAAAAGAACGGTAATGCCAAAAAAGTCAAACGGTAACACtggtgtatgtacatatattaaaaaaaataataattctcgCACTGTTGCACTCAAGATGTCTAGAcatttagttttattaaatatatatgtgcaTTTTCTTAATTGACaagaaaagacttttttttttttggccctcGTATGGCCGGTGTTTCTGTTTGCACATTGTATAAATGAGCAGTTATTGACAAGATTATTGTTGGATAATTATGCAGTTCAGTCACTGATATAATGTAGCTTACCCATCCGCCTCCTTCATATCCCCCTGAGAAGGAGCGATTATGGATTCTCTATGGATtctaggtgtttttttttttttctcatgttgaCTGAGAGAACAGGGACCGACCCAGAACAAGCTGGCCTTAACAGAATTAGCAGCTCATTGGCTCTGGAAACAGCACTGGTACAGGGAGACTCTAATACGTCCCATGGATCATGTGTGCATTAGCTTTCACGTAATGAGATGATAATCCCTGGATCACATGCAAagcaaaagatttattttagagTTATTGTTGCTTCTCCTTTCCGAGACTAAAATGTTACACTTAAAATGGAGTAAATCTGTGGgcatttattgtgaaattgGATGTATTGATgtattatttcaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacaatattttcttaagttttacaagttttatttaatatttaataggtCCCCTCATTCTTCTCTGAGAGCTTTGCTTTGTATTTAATTCCATTCTAATAAAGTATGTTCTCTTGGCTAATTTATTACCATCTTGTGCATGATATGAGTTGATGAAGCCTTCTGTGTACAGTATGATGCCTTTGTCCTGTggaaatgtttgatttaaagctgtttctttcagctgtgtgCCCACATTTTCCTTCAGCTGCTGAATGTCTTGGGGCTTTTATGCATTAAACAATGCTGTCTAAACTGA

Function

GO:

id name namespace
GO:0005796 Golgi lumen cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19934 SDF4; calcium-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305133 lncRNA upstream 27317 20008639 ~ 20010104 (+) True G257774
TU305143 lncRNA upstream 29267 20007952 ~ 20008154 (+) True G257781
TU305053 lncRNA upstream 291475 19743485 ~ 19745946 (+) True G257713
TU305050 lncRNA upstream 302208 19733351 ~ 19735213 (+) True G257710
TU304997 lncRNA upstream 332358 19631599 ~ 19705063 (+) True si:ch73-206d17.1
TU305175 lncRNA downstream 14584 20058251 ~ 20070248 (+) False LOC113530699
TU305176 lncRNA downstream 14584 20058251 ~ 20070248 (+) True LOC113530699
XR_003403167.2 lncRNA downstream 14749 20058416 ~ 20070248 (+) False LOC113530699
TU305173 lncRNA downstream 14825 20058492 ~ 20070248 (+) False LOC113530699
TU305174 lncRNA downstream 14825 20058492 ~ 20070248 (+) False LOC113530699
XM_026921359.2 mRNA upstream 72008 19900014 ~ 19965413 (+) True syt6a
XM_034311905.1 mRNA upstream 188759 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA upstream 188760 19840853 ~ 19848661 (+) True zbtb48
XM_026920865.2 mRNA upstream 188760 19840853 ~ 19848661 (+) False zbtb48
XM_034311906.1 mRNA upstream 188760 19841695 ~ 19848661 (+) False zbtb48
XM_026920527.2 mRNA downstream 76283 20119950 ~ 20127658 (+) True ccnt1
XM_034311543.1 mRNA downstream 86039 20129706 ~ 20138298 (+) True pmelb
XM_034311545.1 mRNA downstream 103511 20147178 ~ 20150405 (+) False LOC113530927
XM_034311546.1 mRNA downstream 104985 20148652 ~ 20155096 (+) False LOC113530927
XM_026921333.2 mRNA downstream 104985 20148652 ~ 20150405 (+) False LOC113530927
TU304946 other upstream 558526 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1004433 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1125707 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2916480 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3529041 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 347142 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 466577 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 859438 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 859480 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1184653 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile