RNA id: XM_026921317.2


Basic Information

Item Value
RNA id XM_026921317.2
length 1530
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC113530918
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23422194 ~ 23433656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGCTTCCTCTCAGAGCTTGCTCATATTTGAACCCTGCCTGCTTCACCTTCACGCCTCAACTTCtacaaaaaacaccaacaatgACATCTCAAGTCACACTGCTGCTCATCTGCATGCTTTTCTCCAAAGCACTGTCACTGACTTGTCATCAGTGTCTGCCATCAACGTCTGGAACATGCACCAGTGAACTGATAACCTGTTCAGATCAGTGTCTCTCTACAACCACTGCTGTGTACATGaGTGGTACAAAGGTTACAGATGTTAATATTAAGACTTGCGGACTGCCAGAACTGTGTGCAAGTGGGAGCCTAAACCTGGGAACAGTAAAAGTGACCAGCAATTCCAAATGCTGCAGCACTAACCTCTGCAACACAGAAACACTACCAGCTCTTCCACAGCAGGCTCCCAACGGGCGAATGTGTTACGCCTGTGACACTAACGGCTGCTCAGCAAAAGTGAGCTGTGAAGGAGATGAAGATCGCTGTATCACTGCATCAGttcaacAAGGGAGCAACACTGTGTCCATGAAAGGATGTGTATCCAAGAGCCTCTGCATCGCGTCTGGATCATCAAGCGTACCAGGACTCGGCATATCGAAGGTGCAGTGCTGTGAGGGGAATCTGTGTAACGGTGCTGAGAGCTTcacactgagtttcctcctcATGATcgtccctctgctctcctccatcctcttctACCGTCACACCTCAACTTCTACAAAAACACCAACAATGATGTCTCAGGTCACACTGCTGCTCATCTGCATGCTTTTCTCCAAAGtgctGTCACTGACTTGTCAGAATTGTGTGTCCTTATTATCTGGAACATGTGAAAAGACAGTATGTCCAGATCAGTGTGCCACAGTGACCACTTCTGTGTACAAGAGTGGCACCAAGGTTCAGGATTTTAATATAAAGTCTTGCAGCATGGCAGACGAGTGTGTAAGTGGCAGCATGAACCTGGGAGTGGTGAAAGTGAGAGTCAATTCCAAATGCTGCAGCACTGACCTCTGCAACACCGAAACACTGCCAGCTCTTCCACAGCAGGCTCCCAATGGGAGAATGTGTTACACCTGTGATGCTAACAGCTGCTCAGGAACAGTGAGGTGTAGAGGAAATGAAGATCGATGCATCAGTGTATCAGttaaacaaataagcaaaactATGTCTCTGAAAGGATGTGTATCCAAGAGTGTCTGCGCTGTGTCTAGCTCAACAAGTATGGCAGGAATCAGCATATCACATTTGCAGTGCTGTGAGGGGAATCTGTGTAACGGCGCTGAGAGCTTcacactgagtttcctcctcATGATcatccctctgctctcctccatcctcttctgagCTCTCTACTGATGGAGCAGCTCATTTTATTGGTTTGCCTTACTGTTAACTGTGGTATAGTGCCATTTCAAGCAAATGTATCAGTCATGTCTTTCACTATTCTTTTTTTCGGAAATCAATGAAGAACTCAAAAAGACTTTAAACCGTGAGCAGCAAAATAGACACAAATATAGAAACTATTAGta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307756 lncRNA upstream 59904 23344862 ~ 23362290 (+) True G259978
TU307745 lncRNA upstream 73257 23332680 ~ 23348937 (+) True G259968
TU307742 lncRNA upstream 86859 23332680 ~ 23335335 (+) False G259968
TU307732 lncRNA upstream 113602 23307755 ~ 23308592 (+) True G259962
TU307418 lncRNA upstream 144285 23277434 ~ 23277909 (+) True G259690
TU307813 lncRNA downstream 35170 23468826 ~ 23469057 (+) True G260009
TU307815 lncRNA downstream 40257 23473913 ~ 23474444 (+) True G260011
TU307893 lncRNA downstream 93772 23527428 ~ 23562384 (+) True G260074
TU307905 lncRNA downstream 120940 23554596 ~ 23555077 (+) True G260083
TU308085 lncRNA downstream 393236 23826892 ~ 23827631 (+) True G260222
XM_026921236.2 mRNA upstream 966 23414817 ~ 23421228 (+) True LOC113530872
XM_034311598.1 mRNA upstream 10795 23407809 ~ 23411399 (+) True LOC113530556
XM_034312230.1 mRNA upstream 46451 23371744 ~ 23375743 (+) False LOC117599309
XM_026920165.2 mRNA upstream 90928 23319361 ~ 23331266 (+) True znf341
XM_026920166.2 mRNA upstream 90928 23319361 ~ 23331266 (+) False znf341
XM_034311581.1 mRNA downstream 6840 23440496 ~ 23443625 (+) True LOC113530555
XM_026921319.2 mRNA downstream 13973 23447629 ~ 23450712 (+) True LOC113530919
XM_026920351.2 mRNA downstream 26939 23460595 ~ 23463606 (+) True LOC113530412
XM_026920691.2 mRNA downstream 43538 23477194 ~ 23480770 (+) True LOC113530554
XM_026920690.2 mRNA downstream 50069 23483725 ~ 23486524 (+) True LOC113530553
TU307780 other upstream 32880 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 38541 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 38541 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 742644 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1110306 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 598571 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 834921 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 1191281 24624937 ~ 24634545 (+) False ddx58

Expression Profile