RNA id: XM_026921321.2


Basic Information

Item Value
RNA id XM_026921321.2
length 6364
RNA type mRNA
GC content 0.46
exon number 28
gene id ccdc30
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10438844 ~ 10458808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATGGTATGTTCCGTTACCAAGGTGCTTGGCCCAAGCTCCTCACAAAGATATGTAGCAGGCCACCACGAGCCTTCTGCAATGTTGACAATCATAGCTTGCCGGATAACCGAATATTACCaagttgaagttttttttttcttcaggattTTACTATTACTGTTTGTAGGCTGTGCTAAATAGTTAAAAAGCCAAGGGTAACTTTTTCCTAGCTAGCTAACGCGCTGCGCTCGGTTGTTAGAAGTGGTCAGCTGGAACTAGttggttagctagctatgtagctAAATACAGCTAGCAGTGACCAGAGAAAGGCCAAACAGAAACGGTGTTTGCACGAGTAGGgacgtgtgtgtggtttctgtcTGCGTCTGTGGCTAATTAGGCGTTAAGGGTTAGCAACTTTGTTTAGACGTCTCGGAGTTTGTTCTATTAATGTCTACAAACCCTGTGAGTAAGATGAGCAACAGGTTTATCGGTGCACTGGTCAGTCACTGTGTGGCGTGTGTGCAGCATTAATAGCACTTTCTATAACGGTGTCTGTGGAATGATGATTAGGAGAATATATGATCAGTTTGGTTTGGTTATTAAATGTTGGAAACGACATGCTGGAGTGTACTCTGAGTGCTGTGAGCTGATTTACAAGTGATGAGTGGACTGCTGTTGGACTTCAGCTGGCCATGGAACAGAAACAGGATAAAACCGAGCTGAAGGAGCTCTTCATGCGCTTGGAGAAGGATGGCGTCCCACCTCAGGCCTCGGCGGATGAGCGTCAGCGCCACTTGTGGCGTCTTCTCCAGAGCAGCGAGGGCAGCCTAGCCTCAGCCACACAGGAGCTACAGGCTCTCCGCGAACAGCAGGCCAGCGAGATGAAAGAGGTGGAGAATTATGTGGAGCATATTCGAAACATGTTAGAGGAGCGTGAGTGTCTGACAGCTGAATATGAGCGGGACAATGAACAGCTCCGCGCTGAGCTTGAGCAGATAAAGCACCAGCAAGAGTGCCAATATAAAGAGGTGATGGAGATGCTGGAGCAGGAAGGTCTCGCTGAAATCAGTAACAGCAGTTCCAGTGAGCAGGTGGCTTACCTGCTGGTAGAAAGAGTCACCTTGCTGGAGAGGTTGGAGGCTGCAGAGAGGAAGCTCGATACTCAGACCCTGACAGGGAACCTTAGAGAGGTCCACCTGCAGGAGGAACTGGACCACATCCGGCACACACTGGAGGAGGAGCTCAGGCAGCAAAAGGAAATGATGCGGCTCACTAAAGAGAGTATGAGCAAGGGAAAAGAATCTACAGCTCAAAGCCCATGGAGGAAGCTCTTTGGTGTGCACAAGGCAACAAAAATGGCACAGAGCCTCCCTCTTgcCCACAGTGCAGAACTGGAGCAGGAGCACACAGAAAGGAAGAAGCTAGAGAGGGATCTGGAAGAGGCGTCCTGCAGACTCACTATGGCTCATCAGGAGATTCGCCACCTAACTGATGAGCTAGATCTGGCTCGGAAAGCCCAGGATGCTTGTGGCCCTGACCTGCAGACAACTGGAGAGGAAGTGGCACGgctaaaacaggaagtagaacaATTAAAGCAGTGTGATATGGTGGAGCTGCACAAGGCAAAGGAGCACAATGAGAGACTTGACACAGAGATTCGGGCACTGAGGGACAGAGTACGTTCCTTGGACTCTGAGAGGAAGACTCTTTTGAAAATGATTGAGAATTTTAAGATACATCCTAATTATGGAGGCAAACCTGCAATGGATCATGGATCTACTCAAACTGTACAGGTTGATGAAAATGTGGATCATTCAGAACAGTCAGGTACATCATTAAATGATGAAAAGGATCAACTTCATAAAagCAGGTGTCGAAGAGAATCTGAGGATAAGGACTGCCGTCTTCGGGAGCTGGAGAGGAGGCTGCtaaagcagcagcaggagcatgAGGAGCTGGTGGAGAGGAACGAGGAGCTGGAGGCACTGCTAGGGGAGGCACAGAACAAAGCGAAAGAGGAGCGAGAGTGCCACGAGTGTGAAGTGGACAGCTTGCAGAGAAAGATTAAAAACATAGAGGCAGAGTTAAATGCAAAGAATGCCCATGAGAAGAGACCTGTGGAGAAGAGTGATCAGACTAAAGAGACTATCTCCGAGCTACAAGGTGGTATTCAAGAGAGACTGACGTTTCTTGAGAGTCGGCTTGCTGAGGAGAAGGACTGGAGGAAACAGTTAGAAGTGGACTTAGCAGTGGCCCAGTCTTCtctgaaaaaagagaagcagGCACTGCAGAGAGAGCACgaggaactgaagaaattaCGCATAGAGGTGCAGAGCTTACAGGCTGAGTGTCAGCAAGGGAAATCCCTTAACATGAGCCTCACACagataaaaggagaaaagggAATTTTGGAAGAAAAGGTGGCCCAGTTGGAGCGTGCTCGGTCACGGCTGCAGGACGACCTGGCACAGCACATAGAGGGCAGCAGAGTGCAGGAGGACCTGAGAgagagcagggagcaggtgACACAGCTTAATGCTCTAGTTGAACAGCTGCGATCAGAACTGTGTAAACTGGAGAAAGAACACAGCACACTGAGGAATGAGATGGTGGAGAAGCGCAAGCAGGTGATGGAGCTGCAGGCCGAGCTGAGTACCAGAGCCCAGGAGAGGCTGCAAGCCGAGGGCCAGGCGGAGCGGCTCGGTCTAGAACTGCAGCTCAAGAACGAACAACTCCATGCTGTCAGGCAGGAGAGAGCACGTGACCCTAATCCCAAATCTTCTACAGGAAAGGATGACGAGCTCAGCCAGGTGGCATGTGCGAAGTCAGAGATGAGTAAGCTGCACACCACCCTGGAGCAGGAGAGACTTCTGGCTAGTCAGCACCAGCTGGCGCTGCAGGCTCAGATCAGTGAAGCCCAGGCCCGGGTCAAGGCTCAGGACTCTGTCCTGCAGCAGAAGGGTGAGGAGAACAAGCAGCTAAAGCACGACCTGCAGCGGACCCAGCACCTCTTTACTTCAGCTGAACGAGAGCTGCGTTACGAGAGGGAGAAAAATCTTGACCTTAAGAGACATAATGCACTTTTAGACCAAGAGAAGATCAAGCTGTGTGCAGAGCTGAAGCAGGCTCAGGCCAAATTGGCACAGCTGGAGGCCAGTGCAGCAGCACAGGCGGCAGAGCTGGAGCAGCTGCAGCAGAGAGCCAGGGAGCTGGACCTGGAGCTCGCCAGGAACAGCCAGAACAGACAGAGCAGCAGTAGCCTCCGGGAGGAGCTCAGTGCTGAGAGAGCGCGGGTTATTGCTGCTGACAAGAAGGTGTTGGAGCTTCAGCAGCAACTGAAAAACGCTCTGCATCAGTTGCGTCTGGAGGAGGCCAGAGCTGGAGAGACCAGCAAGTTGGAGAGAGATACCAGAGACATGTCTGATAACTTGTCTTCCCTCCGAGCTAAATTGCAGGAAGAAAAGCTGCAGAGGAAGTTAGCGGAGCAGAGGGAAGAAGAGCTGCAACAGCAGGTGCGCTCTCTGCGTACGAAAGAGGCCACCCTCAGTCGCGCTAACTCTGAGCTCTCCCACCGCTCCCAGCAGATGGAGACAAGGCTGGAGGTGCTGGAGAGTGAGCTGAGCTCTGCCAAGGAGCAGCAGAGCCTCAGTCAGAAGAGTTGCCATAAACTGGAAGAGCAGCTCATGTCCTCCCAGCAGGAGTCTGAAAGACTGCAGGACGAGCTACAGAATATCCTTCAACAGCTTGATACCAACATCAGGCGATACAACGAAAAACATTCTGTACATAAAACCAAGCTACGCAGAGCGAAGCAGTTGTTCATGAAGGCAACCACCCAGCGAGACATGAAGATCCAGAAGCTAGAGAATGATCTAGCACTTGCAATGAGTCTGTCTGAGAAAGAAAAGGACTGGATTAGGACTGTGACTGAGGAGAATGAGCAGCTTCTGCTGGAGAGGCGAGACTTGCTGAGGAGGATAACTGAGGCTGAGGAGATGGGCAACAACGGAATTAGAACAGCTACGGACACGCAGCAGAGGTTGAAATTCTTGGAGTTGGAGAATAAGCAGCTTCAGGATAAAACCCTGAAGCTGGCCAACCAGATCGGAGTTTTAGAACGAGCACTGAGAAATCTTCAATCAGTGTGTAATGCTGAGGAGGTAAAGAAATTCTTTCCCTCTGGTATTGTTCCTGATGGCCTCTTGCAGACATCgagTCCGAAGCTGGGGCTCCGTGACTCGTGGGGATTATTGGATGCCATCTGCCGGGTTAAAGTGGGCGAGCACGTCAAAAGCCTGGAgtcttctctctctttgcccACCTCTCAACCATCAGAGATTGGCTACCTGAATGTGAGCTCCTCCATGGCTCCCAATGTCACCCAGCATCAGGAGGAGAACCACAGCGTCTCCAGCGAAGATGCCTGAGGAAACCGCTCCTTATTACCAAGATTGCCAACTATCTCCAGATTTATAGCCAGTCTGTAGTAATTGTCACTGGGTCAGAAGTTGCCTGATCAAAGATTGACAAGACATTAACTTGAGACAAGTAACAAGACAAAGCTCATTACAAATCAGTTCAGTGTTGGCTGCCATGCTCTGAtatgttttgattttgttaGTAATGTGATAAGATTTCACTGTGGAACCGAAGAGAGTGAATCTGACTGTgaggacaggaagaggaagtcCTGCCTTTTCACATCAGTTTTGTAGGTGATTCACTTTTTCTTCAAAAATGCTTCCTTACATCCAAATAGGAGGGCTGATTCTGTACAGTGCTTATATATGAAATCATGGCTAACTGGTAGCCAGATTATCCAAAAAAGGTACTTGTTTTAGTAAACtatgtcactgtgactgaagcaatcattatcattttttaaagtttttttttttattattactgtaatgTATAACATTCTCCCTTAATTTTACTCAGGGTCATTACCCCTCAGCTGAGTTTATTGCCTTTGCCACTTGTATCCTTTAGAGGTCCCCAATCCAGTACTTCAGGGCTCTTGTGTATTCCAGATAGCCATAAAGCTGAGCCTTGTGATCAAAATTAAACAGCCACTCACCTGACCCTCCTATTGTCAGTGCTGGGAAATGTCAAAGGAAACAGATTGTGATTCTCCAGAACCCAAGTGGTTTGTTATTTGCAGTAACCCCAGGTAACTGCTTATTGACTACGCAGGGTAGAGGATTTGGCAAGCTGGATCAATGTGTAATGAGTAAcaaaatgttcagtgtttttgaaacatTCAAAAGCAATATACTTCATCTGATATTAAGGCCAAAGCACAAATTACAGCCTTATAAAAGCTGGGGGGAGAATGGTAAGAAACCTTTTTTGCGGTGCAGCTGTTACatgcattgtgttttatatatgtttttaatttggtAATCCATAAAGGAGACATGATACGATAGAGATTTAAAAGAAGAGGATTAGCTAAAGCACTTTTAATGTCAAGTGGTACGTTGTGAATGTTTACAAttagaaaaacacttttttccaCTTCTGTGTGTTTGGGATCCAGGTGAAATCTGGTACAAAATGATTGGCAGCAGGGTCTAAAGCAGCAGTGATGGCTAAAGCACATTTGCAAGTTTAGATCAGTGTATGTGTCAGCACTCAACATTTTAGGAACATGGGATAACTGGGACCtatatctataaaataaatcatagtTAATACTTTATGATTTCCTCCAGAGggttatatgtaattatattaatattctcCTATTCTCCATTAACCTGCCATCTGATCATGGCTGATATTCAGTTGATGGTCTTGTACTTAACCTGCTCTCATATTCCCATATTTCTTAGACCAAAAAATATTGTACATGTGCGCTCCCTAGCCTTGGTCTGGTTCATGATACAGACCACGACACATGGAATTCCATGCCTCTAAAAGGAGAATGACTTCTACTACTAATcagattttattgtatttaaagtCAGGtctcacttttatttaatacactttAGAACTGAGGGTACTGTAAGCTAAATTGAGTAGTGTATTAGACAATACAGTACTTTAATAATTACTTCAAAGCCTGTGCTCATGGCTGAAATATTGCACTACAGTAGTTAAAGTACGTTGCTTATTATGTTATCATTTCCAGTCTTATATGAAGAGCCTTACAGTGTTGTTTGATATGTACAGAATAAGGTACATGGgtattgattttttattttattgtgtgatgtattattatttactacatTATAATcatctgctgaaaaaaaatcactatccTGCATGTTTTGACAATAATGAATCCTCATGGCATTTATTATATTCTACTGTTGAACAACTGAGCACACAAATGTGTATTTTCTTATTAAACAGTGATTACATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299029 lncRNA downstream 42104 10396395 ~ 10396740 (-) True G252610
XR_004579740.1 lncRNA downstream 150160 10244041 ~ 10288684 (-) False LOC117599279
TU299250 lncRNA upstream 196506 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 251587 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 320177 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 323327 10782135 ~ 10782588 (-) True G252859
TU299403 lncRNA upstream 406552 10865360 ~ 10865700 (-) True G252920
XM_026920288.2 mRNA downstream 18042 10412726 ~ 10420802 (-) True si:ch211-112c15.8
XM_034311644.1 mRNA downstream 27315 10403177 ~ 10411529 (-) False ttc34
XM_026920979.2 mRNA upstream 1886 10460694 ~ 10469796 (-) False usp21
XM_026920978.2 mRNA upstream 1886 10460694 ~ 10469546 (-) False usp21
XM_034312046.1 mRNA upstream 1886 10460694 ~ 10469546 (-) False usp21
XM_026920977.2 mRNA upstream 1886 10460694 ~ 10469546 (-) True usp21
XM_026920976.2 mRNA upstream 11691 10470499 ~ 10479864 (-) True arhgef3l
TU298725 other downstream 408851 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1860244 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2929097 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 4131081 6304844 ~ 6307763 (-) False rps26
XR_003404646.1 other downstream 5290712 5148053 ~ 5148132 (-) True LOC113545697
XR_003403171.2 other upstream 1886 10460694 ~ 10469534 (-) False usp21
TU299234 other upstream 177715 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 555156 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 800235 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 814522 11273330 ~ 11273403 (-) True trnan-guu_24

Expression Profile