RNA id: XM_026921330.2


Basic Information

Item Value
RNA id XM_026921330.2
length 4961
RNA type mRNA
GC content 0.48
exon number 6
gene id jph2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20155949 ~ 20179690 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCTGGAACATTAACCGAGCTCGGTGGAGAAAAGAGGGGAGACAGGGAGAGGGGAGAGCCATGAAGACCACCGGCTCACCAATTCGACTCAATGGTACTCACCTTGAAAAAAAACCATGTAACTAAAGAAAAGTAACTCCCTCTCCCTAGTCAAATCCGCTCTGTACCGACAGTTTCTCAAGGAGGTTCATCACTTAGTGTGAAATacctgtggatttttttttttttttgtaagaagaAACACAAGAATTGGGATAAAACAGAACAGCTGTCAACAGAAGATGCGCGCCAGCGACTAGACGCACCGACAATGACCGACGTTCAAGAGCAAGAGTTCCCCTCGGCGgaaatacacattttaacaatttaacgTCACTTTGGAAAAGGTCACAGGCTCAGTCCAAGTTTGaagaattgtttttttccccctctttttttccattcaagAAGGATGAGTGGAGGTCGCTTTGAGTTCGATGACGGCGGCGCGTACTGCGGCGGCTGGGAAGGCGGCAAAGCGCACGGCCACGGCATCTGCACGGGTCCGAAGGGTCAAGGCGAGTTCTCCGGCTCCTGGAATTACGGTTTCGAGGTGGTCGGGGTGTACACCTGGCCCAGCGGAAACACGTACGAGGGCTACTGGGCTCAAGGCAAGCGCCACGGCCTGGGCGTCGAAACTAAAGGCCACTGGGTGTACAAGGGCGAGTGGACGCACGGCTTCAAAGGCAGGTACGGCACGCGCGTGAGCCTGGGCAGCGGCGCCAAATACGAGGGCACGTGGAATAACGGCCTGCAGGACGGCTACGGCACCGAGACCTACGCGGATGGCGGCACCTTCCAAGGCCAGTTTACCGGTGGAATGCGACATGGATATGGTGTGCGTCAGAGCGTTCCATATGGTATGGCCGCTGTGGTGCGCTCTCCTTTGCGCAACTCGCTAACCTCACTGCGTAGCGAGCAAAGCAATGGCACACTGCTGCAGCAGGATGTtcccatcatcaccaccacaaATGCGTCAGGCCAGGAGACTGTGGTCACCCCATCCATGCCTACGGGGCCTTCACGTGGTGGCTTTGCCCTCAGCCTACATGGTGACCCTGAACTTGCCAAGCCAAAGAAGCGGGGCCTTTTCCGGCGCGGCTCGCTGCTGGGCAAGCTGACCAAGTCAGAATCCCGCACATCCCTCTCCAGCCAGAAGAGCAAGATCAGCTTCCTGCGCAGCGAGTCGGCCCTCAGTTCAGCGACTAGTGATGCCAACTCCACCATCAGCATGGGTGACAGTGAAGCAGAGGGCGAAGGCCACGAGTTCCCACCTGTCGAGTCTGACATTGACGCCACCACTACCGAGGTTTACATGGGAGAGTGGAAGAATGATAAGCGGTCAGGCTATGGCATCAGTGAGCGCTCCAGTGGCCTCAAGTATGAGGGCGAGTGGCTGGACAACCAGCGGCATGGCTATGGCTGCACTACCTTCGCTGAGGGTGGTAAAGAGGAGGGCAAGTATGTACACAACGTGCTGGTGAAGGCTGTGCGAAAGAAGGTGATTCAGCTGAAGGGCACCAAGGTCAAGCAGAAAGTGGAAAGGAGTGTCGAGGGAGCACAAAGGGCTGCTGCCATTGCCAAACAGAAAGCAGAAATTGCAAGCTCAAGAACTTCCCATGCCAAGAGCAAAGGAGAGGCTGCTGAACAAGCCGCTCAAGCGTCCAACAACGAGTCCAGCATTGCACGTGTAGTGGCCAGAGAACTCTCGCCTTCATTCTATCAGCCAGGCCCAGAATACCTAAAGAAGCGAGCACTACAAGAAATTGCTGAGAGCAATGAGAACGCTGAAACAGGCATGCATGAGTCACTGCTGGCTGAGGAGATCATGCCTCCAGAGAGCCCCTTCATGCACGAAATGGAAGGCCTGAAGCCCAACATTAGTCCAGCACGCACACCATCACCTGGACCTACCACCTCTGCTGCTCTAGATCCTAACCTCCTTGGTCCTGGTAGCTGGAATGGGGACAGAAGCAGTCGAGGTGGCGGTAGTGGCAGCAGAGGGGGAAGCCGCCCAGGGAGCAGACAGAGCAGTCGTCCTTCAACTCCATCAGCCAATTCAGCTCAAACACCAGCTTCAGCGCCAAGCAAGGAGGAGCCTGGGGTCCCCAGCACAAAGGGTCCATCCCAATCCCCCAGCCGCCAAAACGCCAAAGCTGAGCAGGGCTCTGACCTTGAGATTAAGCCTCTACAGAAGATGGACTTAGAGTCCAAAGCAGCAGAACCTGCTCCAGCTCCTGTAAGGACCAGCCTCATCTCCTCTACTGATGAAGAAGAACCACCTCCTCCTGCCTCCAAAGTGCCCTCCAAAGCGGCGACCCCAGAACACAAAGCTCCCGAGCAGAGAGCTGAGGCCAGGGAACCTGCAACAGAGCACCCAGCATCAATGACTGAGAGTAAGCGGGAGGCCAAGGAAGACAGAAAAGTGGCTAACAAAGTTGAAGCTAAGCAATCTATGAAACGAGAGCCTAGTCCGGCTCCGAGACGAGAACCAAGCCCGGCTCCGAGGCGAGAACCAAGCCCGGCTCCGAGACGAGAACCAAGCCCGGCTCCAAGACGAGAACCAAGCCCGGCTCCAAGACGAGACCGTAGCCCGGCTCCAAGACACGAACCAAGCCAAGCTCCAAGACGAGACCGCAGCCCGGCTCCAAGACGAGACCGTAGCCCAGCTCCAACACGAGACCGCAGCCCAGCTCCAAGACGAGATCGTAGCCCGGTTCCAAGACGAGACCCTAGCCCGGCCCTGAGAAAAGAATCTAGCCCAACTACTAGACGAGATCCTAGCCCAGCTCCTAAAGCTGTGTCTAAGCCTGAACCCAAGGTTGTGCCTAAACCAGAGCCCAAAGCTATCGCCAAACCAGTCGCTAAGCCTGCTCCCAAAGTGGACCCCAAAGCTGAGCTGAGACAGAGGGCTTTGGTGAAAACCCCTGATGAAGTGACTGGAATCACAGCACCAGAAGAGggcCCAAATACGATTATGATCTGCATGGTCATTCTGCTCAATATCGGTCTGGCCATTGTTTTTGTTCACATCCTGTCCTGATGGAAAGATAtccaagcagaatctttttttttcttcaaaccaAGAACATCTATAttgaagaaagaagagagaggagcTGTGATGGATGCCACATGCTTCCCTTGAGGCTTCACTGATGTGATACAGTCTCAATAAAGCCCTCTCGAGCCACTTGAAGGACAGTTACTATGTATAGTTGGATTGAAGGATGACATACAGTGAAAGTTTCTGTGTCTGAATGGTGGAGAGAGCTTTGCTCTCTTAGGATGGAAAGCATTTATCTGTATTGTGCTGCTTTAAAGAACGATTCTTCCCAAATGAACAGTGCCATTTACTTAAAAGGGTGAATATATTTTATGCAAATCAAGCATTGATGTCAAGCTTACCTGGTTTACCACTGATTATCAATCAAAGCCATAGTTTCAGATCAGTCTGAGATCACGTGAatttaaagaaggaaaaaatctACTAATTggccaaaaaaaatgttttgtgcttATTACCACCTGACAAATGTGTTGAAACTACTTTATTAATGTGCAATAATGCACACTCAATAAGATGTCTTAAAGTCTCACAATAAGGCCTTTTCCTTCAGTCTCTAATGCAGTCTTCTAATACATGACACatacaaacttttttcaaacctcatgataaaaaaaatggattctGCAATAAATCTTTGACTATTACAATATAAGCCTAAGTATAAGAACAAAGCAAAGGTCAAGAATTTCATTTCATGTGAGGAGCTGTGTGTCATATGGTTTTGCCTGATGTTCCTCAGAAGGTTTTTCTTTCTGAATATAACATCCCACTTCCATTTACAGTGTCtgaaattttacaaaaattagcaaaaacaaaGTTGTTTAGCTAAAGAAACATTGTACTGTGAACATGTTTGTGCTTGcaaatataatttttgaaaGTACCATTTGCAGAAACTAAAGTGGTGACGTTTGAGTACTCAAACAAAACTGGttttgtatgcatgtatgtTAAGGGTTTTTCTACCTTTCTAAAATTGTGACGTTACATTACAGCAACATGTGCATTTGCAAATATTGTAGAGTCACCTTAGAACAGGGGTGGCAATCTGCAGAGGGCCAGCGTGGCTGCAAGCCTTCATTTCCAGCCAGTCAGGATCTACAGCTGTTCCCACTTGATAAATCAGTTGATTGTGGATCATGGAGCGTGAACCTGCAGTCACGCTGGCCCTTTGCGGATAGGATTGGACGTCCCTGCCTTAAAATATTGCAAACATATGTTTTGATTAATGTCTCCCTATTAGAAAAGTAATTATTACCTCAGACTTTGCATTGAAGAATTGGTTTGCACCATGATGATAGTCTTTgcccaaatattttattttattttgagattttatttgGACATAAACAGTAGTCATGGATCCTAAAGCCTTCATCTAGGTCTTTGACCCATTACCGAATGATATGAAGAGAAATTAGTGAGTTACATGTAATTGCTCTGAAACAGCATTCATCTGTTTTGGCTTGTAACCGTTTGCACTGGAGTGGTTTGATATGGCAGTGTTTTACAATGCAAATTTGCCAATGTATTTTATTCTCATCAGAGTGCCACCCACAAATGTCCatgttatgaataaaaaaaaaagtcaaagatGTTATTTATTCATAGGTTTGTTTTCATATGAATGCATTAATTCATGCTTTCACTGCCCAAATAGTGCACACATTCAGAATCTGGATTTCTCAATATGACTTCCAAAATGTTCATCCCATGTAGATGATTTAATTAACGCATACTTGTGTTTGCACCTTGGAAAGGAATTAAATCACAGCACTCAAAATGCCAAGTATAAATGTATTGTGCTGAGCAGTACCACTGAATgcaaataaatctatttttcaACTGTAA

Function

GO: NA

KEGG:

id description
K19530 JPH; junctophilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305460 lncRNA downstream 11700 20144025 ~ 20144249 (-) True G258003
TU305425 lncRNA downstream 26837 20128905 ~ 20129112 (-) True G257980
XR_003403186.2 lncRNA downstream 98043 20051421 ~ 20057906 (-) True LOC113530857
TU305265 lncRNA downstream 541270 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 564819 19586328 ~ 19591130 (-) True G257870
XR_003403139.2 lncRNA upstream 134672 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 184365 20364055 ~ 20373180 (-) True LOC117599243
XR_004579708.1 lncRNA upstream 189759 20369449 ~ 20371300 (-) False LOC117599243
XR_004579709.1 lncRNA upstream 189759 20369449 ~ 20371300 (-) False LOC117599243
TU305692 lncRNA upstream 196648 20376338 ~ 20402260 (-) True G258198
XM_026921334.2 mRNA downstream 13894 20138780 ~ 20142055 (-) True tuba1c
XM_026920526.2 mRNA downstream 36002 20109782 ~ 20119947 (-) False mlh3
XM_026920525.2 mRNA downstream 36002 20109782 ~ 20119947 (-) True mlh3
XM_026921412.2 mRNA downstream 46739 20101227 ~ 20109210 (-) False kansl2
XM_026921228.2 mRNA upstream 19176 20198866 ~ 20201745 (-) True mfsd5
XM_026920084.2 mRNA upstream 25582 20205272 ~ 20222113 (-) True nr1d4a
XM_034311842.1 mRNA upstream 94932 20274622 ~ 20287213 (-) False calcoco1a
XM_026920639.2 mRNA upstream 94932 20274622 ~ 20287212 (-) True calcoco1a
XM_026920991.2 mRNA upstream 319588 20499278 ~ 20509708 (-) False cbx5
XR_004579656.1 other downstream 36000 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 46739 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 52038 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 534389 19615527 ~ 19621560 (-) False magi3a
XR_004579690.1 other downstream 768908 19370687 ~ 19387041 (-) False LOC113530570
TU305550 other upstream 72480 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 651138 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 989296 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 1174936 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1749485 21929175 ~ 21954605 (-) False fyco1a

Expression Profile