RNA id: XM_026921335.2


Basic Information

Item Value
RNA id XM_026921335.2
length 1605
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC113530927
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20147178 ~ 20155096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATAAATAACTCCACCCCCAAGCTCTTGACCATTTCGTGTTCTCACTACAGACTCATTACAGTCAAGCTGTGAGAAGTCCAGTTCaacctttattttttgtaaGCTTTCACTTAGATCCACATTAAAATGCGTGAGTGCATCTCCATCCACGTAGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTACTGTCTTGAACATGGCATTCAGCCGGACGGACAGATGCCCAGCGACAAAACCATCGGCGGTGGCGATGATTCCTTCAACACCTTCTTCAGTGAGACTGGAGCCGGAAAGCACGTCCCCAGGGCTGTGTttgtggatctggagcccaCTGTCATAGATGAGGTCCGCACTGGAACATACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAGGACGCCGCCAACAATTACGCTCGTGGTCACTACACCATTGGCAAGGAGCTGATTGACCTGGTTCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTCGGTGGTGGAACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGCCTGTCTGTTGACTACGGTAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCTACTGCTGTGGTGGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTAGAGCACTCCGACTGTGCCTTCATGGTGGACAATGAAGCCATCTATGACATTTGCCGTAGGAACCTCGATATCGAGCGTCCTACTTACACCAACCTCAACAGGCTTATTAGTCAGATTGTGTCCTCCATCACAGCCTCTCTCCGTTTCGATGGTGCCCTCAATGTCGATCTTACTGAATTCCAGACCAACTTGGTGCCCTACCCCCGTATTCATTTCCCACTGGCCACCTATGCTCCAGTGATCTCTGCAGAGAAGGCTTACCACGAGCAGCTCTCTGTGGCTGAAATCACAAACGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCTAAAGATGTGAACGCTGCTATCGCCACCATCAAGACCAAACGCACCATCCAGTTtgtggactggtgtcccacTGGGTTCAAGGTAGGCATCAACTACCAGCCCCCCACTGTGGTTCCAGGTGGAGACCTGGCCAAGGTGCAGAGGGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCCGAGGCCTGGGCTCGTCTCGATCACAAGTTTGATCTGATGTACGCCAAGCGCGCCTTCGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAGGATTATGAAGAAGTGGGTGCTGACAGTATGGAGGgagaagaggaaggagaggagtATTAAGTTgaccttctttccttcctttttcttttccttggcAGACCTGTCATGTCTTTTTATGTGTGTTCTTGTACTTTATTTCATCAGTAGCAAGAGCTAAACAATAAAGGTGGAAAAAGCTTCCTCTGCA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305179 lncRNA upstream 43020 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA upstream 43020 20108390 ~ 20109226 (+) True G257803
TU305178 lncRNA upstream 48206 20101008 ~ 20104040 (+) True G257802
TU305196 lncRNA upstream 52748 20099230 ~ 20099498 (+) True G257814
TU305195 lncRNA upstream 86238 20065477 ~ 20066008 (+) True G257813
TU305574 lncRNA downstream 214899 20369995 ~ 20386813 (+) True G258097
TU305577 lncRNA downstream 214899 20369995 ~ 20379334 (+) False G258097
TU305640 lncRNA downstream 412694 20567790 ~ 20576789 (+) True G258156
TU305646 lncRNA downstream 456445 20611541 ~ 20657067 (+) True G258162
TU305792 lncRNA downstream 508586 20663682 ~ 20680938 (+) True G258273
XM_034311545.1 mRNA upstream 1841 20147178 ~ 20150405 (+) False LOC113530927
XM_026921333.2 mRNA upstream 1841 20148652 ~ 20150405 (+) False LOC113530927
XM_034311543.1 mRNA upstream 13948 20129706 ~ 20138298 (+) True pmelb
XM_026920527.2 mRNA upstream 24588 20119950 ~ 20127658 (+) True ccnt1
XM_026921316.2 mRNA upstream 108579 20037421 ~ 20043667 (+) True sdf4
XM_026921229.2 mRNA downstream 28141 20183237 ~ 20198652 (+) True gdap1l1
XM_026921439.2 mRNA downstream 76992 20232088 ~ 20268787 (+) True rarga
XM_026921440.2 mRNA downstream 97068 20252164 ~ 20268787 (+) False rarga
XM_026920340.2 mRNA downstream 181875 20336971 ~ 20340547 (+) True hoxc13a
XM_026920252.2 mRNA downstream 192063 20347159 ~ 20350929 (+) True hoxc12a
TU304946 other upstream 673351 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1119258 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1240532 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 3031305 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3643866 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 235713 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 355148 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 748009 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 748051 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1073224 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile