RNA id: XM_034311545.1


Basic Information

Item Value
RNA id XM_034311545.1
length 1592
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC113530927
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20147178 ~ 20155096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTATAAATTGGGAGGCTCGCGCAATGAAAAGCCCATTCTTCTTACATCGACCCGTTAGTTGTCGAGCTGTAAGATTTCTCCACGGAGACACACTTTCTTATTATCCTCACTATCAAGACCGTACGGAACAATGCGTGAGTGCATCTCCATCCACGTAGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAACTCTACTGTCTTGAACACGGCATTCAGCCGGACGGACAGATGCCCAGCGACAAGACCATCGGAGGTGGAGATGATTCCTTCAACACCTTCTTCAGCGAGACTGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTttgtggatctggagcccaCTGTCATAGATGAGGTCCGCACTGGAACATACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAGGACGCCGCCAACAATTACGCTCGCGGTCACTACACCATTGGCAAGGAAATTATTGATCTGGTGTTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTCGGTGGTGGAACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGCCTGTCTGTTGACTACGGTAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCTACTGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCCGACTGTGCCTTCATGGTGGACAATGAAGCCATCTATGACATTTGCCGTAGGAACCTCGATATCGAGCGTCCTACATACACTAACCTGAATaggctgattggtcagattgtgTCCTCCATCACAGCCTCTCTCCGTTTTGACGGTGCCCTCAATGTCGATCTTACTGAATTCCAGACCAACTTGGTGCCCTACCCCCGTATTCATTTCCCACTGGCCACCTATGCTCCAGTGATCTCTGCAGAGAAGGCTTACCACGAGCAGCTCTCTGTGGCTGAAATCACAAACGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCTAAAGATGTGAACGCTGCTATCGCCACCATCAAGACCAAACGCACCATCCAGTTtgtggactggtgtcccacTGGGTTCAAGGTAGGCATCAACTACCAGCCCCCCACTGTGGTTCCAGGTGGAGACCTGGCCAAGGTGCAGAGGGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCCGAGGCCTGGGCTCGTCTCGATCACAAGTTTGATCTGATGTGCATGCCTGCCGCCGCCGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCCTTGGAGAAGGATTATGAGGAGGTTGGTGTTGACTCCATTGAAggtgagggagaggaagagggagaggagTATTAAAATGCTGAAGGAAGTCATTCTCTGCTGCAGGATGAAATGAATCTTttacaacaaacaaaataacactgtatgcaaaaacaaaaaataaagctCCTTTCAAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305179 lncRNA upstream 37952 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA upstream 37952 20108390 ~ 20109226 (+) True G257803
TU305178 lncRNA upstream 43138 20101008 ~ 20104040 (+) True G257802
TU305196 lncRNA upstream 47680 20099230 ~ 20099498 (+) True G257814
TU305195 lncRNA upstream 81170 20065477 ~ 20066008 (+) True G257813
TU305574 lncRNA downstream 219590 20369995 ~ 20386813 (+) True G258097
TU305577 lncRNA downstream 219590 20369995 ~ 20379334 (+) False G258097
TU305640 lncRNA downstream 417385 20567790 ~ 20576789 (+) True G258156
TU305646 lncRNA downstream 461136 20611541 ~ 20657067 (+) True G258162
TU305792 lncRNA downstream 513277 20663682 ~ 20680938 (+) True G258273
XM_034311543.1 mRNA upstream 8880 20129706 ~ 20138298 (+) True pmelb
XM_026920527.2 mRNA upstream 19520 20119950 ~ 20127658 (+) True ccnt1
XM_026921316.2 mRNA upstream 103511 20037421 ~ 20043667 (+) True sdf4
XM_026921359.2 mRNA upstream 181765 19900014 ~ 19965413 (+) True syt6a
XM_026920865.2 mRNA upstream 298517 19840853 ~ 19848661 (+) False zbtb48
XM_026921335.2 mRNA downstream 1841 20152246 ~ 20155096 (+) True LOC113530927
XM_026921229.2 mRNA downstream 32832 20183237 ~ 20198652 (+) True gdap1l1
XM_026921439.2 mRNA downstream 81683 20232088 ~ 20268787 (+) True rarga
XM_026921440.2 mRNA downstream 101759 20252164 ~ 20268787 (+) False rarga
XM_026920340.2 mRNA downstream 186566 20336971 ~ 20340547 (+) True hoxc13a
TU304946 other upstream 668283 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1114190 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1235464 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 3026237 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3638798 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 240404 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 359839 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 752700 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 752742 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1077915 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile