RNA id: XM_026921339.2


Basic Information

Item Value
RNA id XM_026921339.2
length 895
RNA type mRNA
GC content 0.54
exon number 6
gene id znf740b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20557604 ~ 20566597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGAGCGCCCTCTGTTGTACCGGAAGAACCGATACAGGCGCTTGGTCACGTGCCACGCTCTCCCCTGAGAGCACTTCCGGTggtgtttcctgtgtttgtaaactgggggaaaaaataggaACTCCGACGAGAAATATTGCTCGCACAGAAACGGAagGCTGGGTTGCTGGGCTGTGAGGCAGTGCTCTCCAGTATGGCTCTGATGCAGGCCAGTTCTCCACCCAGCCATAAAAAGATGGCGTCTCCACTGAGCCAGAACCACAACCACAGTCACAACCAGGAAGCCCACAGTCACCACAGTCACATGGTGCTACCTTCTGGAGTCAGCTGCTCACCCATGCTCATTAATAAGGATGGAGAGTTCCACTCTTCCCGGCTGCTGGAGGAGAAGGACATGCAGTCGAGCCAGAACGCGCAgtcaaagaagaaaaacaggaagtcaggaaCACCGAccaaagtgagagaaaaagtgcAGGTGGAGATGCCTGAACCAAGCGATGACGGTTCTCTCAACTCCCAGGTGCAGAAGAACTTCATCTGCGAGCACTGTTATGGAGCGTTCCGCAGTAGTTACCACCTCAAACGACATATCCTCACTCACACAGgtgagaaGCCATTCGGGTGTGACATGTGCGACATGCGGTTTATTCAGCGCTACCATCTGGAGAGACACAAACGTGTGCACAGTGGAGAGAAGCCTTATCAGTGTGACCGCTGTCAGcagaACTTCTCCAGAACAGACCGGCTCTTGCGGCACCGGCGCATGTGTGTCGTCGGCATCCCTAAGGAGGAGAACACGTCGTGCTGTGAGGGACGATCTTATTCACAGGAACCTGCGCAGCAGTCGTGGAGCCCCCTACAGgccaacaacagcagcagccgGCTTGCAGTGTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305751 lncRNA downstream 36470 20522552 ~ 20523645 (-) True G258242
TU305676 lncRNA downstream 39912 20518425 ~ 20520203 (-) False nfe2
TU305681 lncRNA downstream 43402 20511166 ~ 20516713 (-) True G258189
TU305741 lncRNA downstream 72705 20470193 ~ 20487410 (-) True G258232
TU305692 lncRNA downstream 157855 20376338 ~ 20402260 (-) True G258198
TU305773 lncRNA upstream 23161 20589758 ~ 20593161 (-) True G258258
TU305785 lncRNA upstream 43714 20610311 ~ 20611059 (-) True G258268
TU305953 lncRNA upstream 209552 20776149 ~ 20776709 (-) True G258411
TU305972 lncRNA upstream 317202 20883799 ~ 20884095 (-) True G258424
TU305980 lncRNA upstream 334681 20901278 ~ 20902757 (-) True G258427
XM_026920986.2 mRNA downstream 34651 20519345 ~ 20525464 (-) False nfe2
XM_034312052.1 mRNA downstream 34651 20519345 ~ 20525464 (-) True nfe2
XM_026920991.2 mRNA downstream 50407 20499278 ~ 20509708 (-) False cbx5
XM_026920876.2 mRNA upstream 1192 20567789 ~ 20577934 (-) True csad
XM_026920972.2 mRNA upstream 14010 20580607 ~ 20586424 (-) True zgc:174906
XM_026920755.2 mRNA upstream 47071 20613668 ~ 20658178 (-) True spryd3
XM_026920756.2 mRNA upstream 50038 20616635 ~ 20658178 (-) False spryd3
XM_026920757.2 mRNA upstream 50038 20616635 ~ 20655577 (-) False spryd3
TU305550 other downstream 288208 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 440166 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 450905 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 456204 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 938555 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 264231 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 602389 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 788029 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1362578 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1879433 22446030 ~ 22449427 (-) True G259306

Expression Profile