RNA id: XM_034311557.1


Basic Information

Item Value
RNA id XM_034311557.1
length 3070
RNA type mRNA
GC content 0.42
exon number 4
gene id rgs19
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13386896 ~ 13430881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCCGGGCGCAGCACTCGCCCCCCACACAGAGACCCAACGCCTGCTGCTTctgctggtgctgctgctgtAGCTGCTCTTGGCCAAGATGGTTCGGGCACAACTGTTATTTCTCAATGCCGTTTTACCACCTTCCAGTCTCACTATTAGGAGAGAAGACGAGAGTCGCCGGAGATTGAAAGCCCAGGAGAGTAAGCTGGAGACCATACCAAACTGTGAACCATGcaccAAACCAACGGTGGAGGAGATGAAACAGTGGGCTCAGTCCTTTGATAAGCTGATGAAGAACCCGGCAGGCCGGAACGTATTCCGTGAGTTTCTGCGCACAGAGTACAGCGAGGAGAACATGCTCTTCTGGCTGGCCTGTGAGGATCTGAAGAAGGAGATCAACAAGAACATGATAGAGGAGAAGGCACGCATGATCTACGAAGACTACATCTCTATTCTTTCACCTAAagaggTGAGTTTGGACTCGCGGGTGCGTGAGGTAATCAACAGGAAGATGCAGGACCCGAGTCCGCACACATTTGAGGATGCACAGCTGCAGATCTATACGCTCATGCACAGAGACTCGTACCCACGCTTCCTCAACTCACCCATCTATAGATCACTGGTGCAGGGGGGCTCACGCTCCTCTTCTGAATCCTAGACCCACCTCTatccacttctctctctccctacaTTAACCCTCCATCACACAACCACTAAAGGAGAAAGATCCTGTTGGCTTCTTGTCATGGTTGGATTATGCCTCTTTTTCCCCCGTGTTTTGCTTTGACTTCACCTCTCGTCTGTTGTCTTGGAGGACACGCCATTCCTCTGGAATATTCTGAACCTGCACAGACTGAAACTGGAAGACACAGGGTTGAAGAAGTAGTCATAGTCATTCCACTGCTTGTGGCGACGGAAACAACTACTGATCCACTCGAGTCTCTTTGtcctttgttcattttttccatAGGTATATGTACGAACACAGTTTAGaacttgttttgtctttttatctgATGTCATGAGTTGACAAAAGACGAGAGAGCCTCTGCAATAAGACACACTGGAGTCGACTTTCTCCGCTCCTCATACGACCGGTTTGCCTATTATctatgacctttgacctgtcCACTGTCTCCCTTCTCTGAGATCAGCTCTCTGAGACATGGGGTTGGGTGGTGGTGGATGGTTATGTTTGTTACCGGAGGGGCTGAAAGTTTCccagttgcaaaaaaaaaaaaaaagaaagaaaaaaaaaaaagaatatttagaATGTTAACAAGTTTTAACGAATGCTATTGAAAACAACAATAAGTGGAAAATAGATGTAGATACAAAGAAAAAGGTGAGTGGTGAGAAAATGCTTAAGTCTTAATTAGACTGGTCActcaaaatacattttaaatttagtattgttaatgttatttattttctattttgtcaACTTTTGTTCTTGTACAGTCAATTTTAAATCCGGTACGGATGACGCAAACCGAGCAAGGTCACGAGTGCTTCatagtgcactgtgtgtgtatgagtgtgtgtgtgtgtgtgtgtgtgtttgagcgtgtgtatgtgtgggtaaGCAAACCTCAGCCTCTCTGGCACATCCTTATTTACAGGATGAAAAGCTTGATGGGTCACATGACCCTTTCCTTGGCAAAAATTGCGAAAAATCAGAGATGCTGCTTTTCTGGGTTTCTCTTCTGGATAAATTCCAGTGTTTCTTTAGTAATTCTTCAGTATTGTAATTTTTTGGCAAATACACTCCTTCATTCAGATGAATTTATAAGGATTGTTTATAGATGCAAAGCACCTCAAAAACCTCTcgtgtacatgtttttaatcacatAGTAGCATTAGTAGTTGAACTTTGTGTGGTTGAACAGCTGCACTGTGATTATCCTCACTTGCTGTCTTCCTCTTCACATTCTCATTTATTAATCACAAGAGGAGGCAACCTATAAGGCTTTACCTAATAATGATcacttcttttaaaataaaaccagaacAATCCCAGCTCCCATCAGTTATTGGACCCAAATCAGCCTGTAGAAATGAACTCTGGCAGAACACCAAGCATTTTATAGAAAAGTGGTGCTTCACATCTATGACATTGTGTGTCCTTGTTGACATTTCTACAGTTTGTGAATAGTCACTTAGCATGATGAATGGAACTCTACCTGAGCATCTGGGCCTTGACTTGTGCACTGTGCAGGACTTACATTCATTGTGCTACAGGAAATGTATAAACTGCACAATTATCTGTATTGAATTCATCTGATTTTAGGACTATTTCACTGCCAAAAGTCTGCACTGGGCTTCAGCGCACAGAGGCTTGGGATGGGACATTAGTGATATAGGATGGTCACAGAGATCTGCAAGCAAAGACGCACACTTAGGCCCTGTCCACGTGTAtatggatatttttgaaaacagttCACATGAAAACAGTATTTTGGATCATTGAAAATGGAGCTTTTGAAACCACCCTCAAAGATGGAGAAATTTTAAAACtcaaattttaaaattgtggTTTGCATGTGTAGTGGATGTGCTAGGACTctgtttaaaatggctgcttatttgatatttgtgatgtgtttgtattttaatttctatttgtattaatattacatCCGCGTGCAGAGGCGCCTGAATCCACCACTCGAGTGGTACAAACTGTACTGTGAACAGACATTATTAATAGGACCAAAGTGTAACCTTAAGCAGTAGTTCCACCTCAGTTTCAGGCTATACATATgaatttgtcaattttttttacattttagaacTTTTGGGaaaccacaaccctgaccagcataaaacagtgaatgaagataaatgaatgactgaattaaCTTTTGGTCATGTTGGTGTTTCTCCACATTTCACATCTCTACCACTCATGCTTAtaacagtttatgaaatactgtCACCACCCAGTTGGTTGGCCTGCTCATGGAAAtgttttcaaatcatttttgcattttcatgtggacagtgatacactatatggccaaaagtgtgtagaaacctgaccataacatccatatgtgggccttccccaaactgttgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300872 lncRNA upstream 424154 12993002 ~ 12993212 (+) True G254123
TU300771 lncRNA upstream 447357 12968371 ~ 12970009 (+) False kif3b
TU300770 lncRNA upstream 447357 12968408 ~ 12970009 (+) False kif3b
TU300743 lncRNA upstream 483065 12933229 ~ 12934301 (+) True G254006
TU300744 lncRNA upstream 513000 12903970 ~ 12904366 (+) True G254007
TU301054 lncRNA downstream 76670 13507551 ~ 13507783 (+) True G254287
TU301177 lncRNA downstream 182457 13613338 ~ 13613537 (+) True G254403
TU301178 lncRNA downstream 183066 13613947 ~ 13614240 (+) True G254404
XR_004579672.1 lncRNA downstream 290403 13721284 ~ 13722885 (+) True LOC117599220
XR_003403196.2 lncRNA downstream 292484 13723365 ~ 13727382 (+) True LOC113530938
XM_034312200.1 mRNA upstream 32422 13373774 ~ 13384944 (+) False LOC117599301
XM_034312201.1 mRNA upstream 32422 13376414 ~ 13384944 (+) True LOC117599301
XM_034311640.1 mRNA upstream 227684 13172191 ~ 13189682 (+) True npbwr2b
XM_034311539.1 mRNA downstream 35628 13466509 ~ 13488511 (+) False sox18
XM_026920139.2 mRNA downstream 53860 13484741 ~ 13488511 (+) True sox18
XM_026920323.2 mRNA downstream 78707 13509588 ~ 13571301 (+) True xkr7
XM_026920625.2 mRNA downstream 143635 13574516 ~ 13587741 (+) True ccm2l
XM_026920626.2 mRNA downstream 143652 13574533 ~ 13587741 (+) False ccm2l
XR_003403145.2 other upstream 566371 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1032792 12366743 ~ 12384574 (+) False LOC113530266
TU300294 other upstream 1273839 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 1295994 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 1517002 11892150 ~ 11900364 (+) False G253367
XR_004579688.1 other downstream 639347 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 639388 14070269 ~ 14072216 (+) True wfdc2
TU301463 other downstream 639388 14070269 ~ 14072216 (+) False wfdc2
TU301848 other downstream 1238923 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 1238923 14669804 ~ 14673952 (+) False G254991

Expression Profile