RNA id: XM_026921347.2


Basic Information

Item Value
RNA id XM_026921347.2
length 1922
RNA type mRNA
GC content 0.43
exon number 10
gene id tcea2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13440784 ~ 13451374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAAAAAGAGGATGATTAGTTTTAGTCTTCAAAATAATCATGAGAATTTATTTTCTATCTCTGCTAAGACAGGTAACTCGGGGAACAAGCGGTAGCAATTTTACTGGgcggaagaaaaaaaaactgcaagtCCCACAATCCCTCAGTTCACAAAAAGACGAGAGCTGCGAAAAAGGCAGCGGTTTCCATTCATTTGGGCATCAAGAGCGcgagaacaaaaacaacactacCGCGTTCTTCCTCTATAAATGGAGGTGCGACCTTAAGGAACAAGATAGGGTATTTTTAAACATGGCGAAAGACCAAGAAGTCGAGCGCATCGCCAAAAAGCTGGACAAAATGGTGCACAAAAACAACACGGATGGCGCCATGGACCTTTTAAGAGAACTCAAGAACATGAAGATGTCACTAGAGACCCTGCAGTCCACGCGGATTGGGATGTCTGTGAACGCTGTGAGGAAGCAGAGTTCAGACGAGGAGGTGCAGACTCTGGCCAAGTCTCTCATCAAGACCTGGAAAAAACTGCTTGATGGTTCTGACGGCAAGtcggaggagaagaaaaagggaCTACCCCCCCTTCAGTCATCGTCATCGAAAGACAGTCCTGGATCCAGTGACTTCAGtaagaaACCAGAGACGCCAAAGACTCCCACCACCCCTACGACCCCCACAACCCCTAAGATGACCTCGTTCCCCCCTCCTCCAGTAACCACTGACAGCGTACGCAATAAATGCCGAGAGCTGCTCGTCTCAGCCCTGCAGACGGACGATGACTACAAAACAATTGGAGCAGATTGTGAAGCTTTGGCAGCAGAGATTGAAGATTGCATCTACAAAGAGTTTAAATCCACTGACATGAAGTATAAGACTCGGTTGAGGAGCCGCATCTCCAACCTGAAAGACCAGAAGAACCCCGACCTGCGCCGCAATGTGCTTTGTGGCACCATCAGCCCCGAACGCATTGCCAccatgactgcagaggagATGGCAAGTGCCGAGCTGAAAGAGATAAGGAAGGCGCTAACTAAAGAGTCCATCCGGGAGCACCAGCTCTCTAAAGTAGGCGGCACTGAGACTGATATGTTTGTTTGTGGAAAGTGCAAGGGCAAGAGCTGCACCTACACACAGGTTCAGACTCGCAGTGCTGATGAGCCCATGACCACATTTGTGATGTGCAACCAGTGTGGAAACCGGTGGAAGTTTTGTTAAGAAGCATCAGGATTCTTCATGTAATCAAGTGACAGATTAACATTGTGAGAAGGtacttttgttacttttttttttccagaagaaatgtcatttttatactCATTTCATAGCTTTGTAATATATTCTGTATGCATATTGCTGTATATGCAAGAAAAAGCTGTTtgatgtaaattttattttatagcatttttttgtaCTGGGAGTATGTTCATTACCTTTAAGCGCTTGAGTTAACTGGACTTTGTAAGTCAGCATTAGCTCATTTGATACTGCTTTTGCCCCCCTGATGAAGCACTCTCTGCCTTTTTGTGCTTTCAATGCTGAGCTTGTCATGCTTAAAGATTTGTACAAATTCATTTTGCACATCAGTAAGATTTGTGAAAGTGTGTTGTAGATATGCATATGCAGATTATGCATTTGGTaacattattttacactttatttggaTAGTCATTTGTAGATGCTAAATGAATTTCCAGTGATCATTTACTGAATGAACAGTTCTAAGTATAGCCTGATATATTTGGTCAACTGAGAAATAACTGATTAGTCTGTCAGTGTCATAGATCATCTATAGCAGACCTTCCAGATAAAGTGGTACTTTTTCTTCTGCAGCTGAATAATGTGTGAAAAGTGGATCTGACTGATAACATTTGACATGTATGATAAACTTGTAGACCAATTGGTCTCAATAAATTTGGAGAAAGATATG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006414 translational elongation biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300928 lncRNA downstream 189431 13251140 ~ 13251353 (-) False oprl1
XR_003403150.2 lncRNA downstream 238153 13201019 ~ 13202631 (-) True LOC113530405
TU300905 lncRNA downstream 299565 13141011 ~ 13141219 (-) True G254153
TU300854 lncRNA downstream 470773 12968364 ~ 12970011 (-) True G254107
TU300857 lncRNA downstream 507645 12932725 ~ 12933139 (-) True G254110
XR_004579752.1 lncRNA upstream 12817 13464191 ~ 13465215 (-) True LOC117599295
TU301365 lncRNA upstream 139126 13590500 ~ 13590970 (-) True G254568
TU301384 lncRNA upstream 163054 13614428 ~ 13614663 (-) True G254587
TU301397 lncRNA upstream 213519 13664893 ~ 13665473 (-) True G254599
TU301398 lncRNA upstream 241423 13692797 ~ 13696620 (-) True G254600
XM_026920113.2 mRNA downstream 156899 13251333 ~ 13283885 (-) True oprl1
XM_034311548.1 mRNA downstream 183058 13251332 ~ 13257726 (-) False oprl1
XM_034312114.1 mRNA downstream 411897 12995420 ~ 13028887 (-) False myt1b
XM_034312115.1 mRNA downstream 411897 12995420 ~ 13028887 (-) False myt1b
XM_034312112.1 mRNA downstream 411897 12995420 ~ 13028887 (-) False myt1b
XM_026920173.2 mRNA upstream 174524 13625898 ~ 13632021 (-) False sla2
XM_026920172.2 mRNA upstream 174524 13625898 ~ 13632021 (-) True sla2
XM_026920609.2 mRNA upstream 184438 13635812 ~ 13699042 (-) False ndrg3b
XM_026920605.2 mRNA upstream 184438 13635812 ~ 13699042 (-) False ndrg3b
XM_026920607.2 mRNA upstream 184438 13635812 ~ 13699042 (-) False ndrg3b
TU300417 other downstream 1281424 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1299611 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1547782 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1548364 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 1872254 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 677842 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 677842 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 677842 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 677842 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1247898 14699272 ~ 14704270 (-) False G255071

Expression Profile