RNA id: XM_026921349.2


Basic Information

Item Value
RNA id XM_026921349.2
length 1572
RNA type mRNA
GC content 0.51
exon number 9
gene id rprd1b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23181609 ~ 23186306 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCaaaattaaaactgttttttcggACGTGAAGTGGACAAACTCCACACCGGCCATCTttgctaacttagctagctCTCCTTGCTAGCGGGAAAAACTCTCCTGGACTCCATAAAAAAGGTTCAGCTAACTATCAGATCTTCAAGCAAAGCCGaaggttcattcattcatccagcCACGTCATGTATTAACACCGCCGCTGAGCAATCAGACCCAGAGGTTCCCCTGGTTGTATTTGGCTCTCCGGTTTAGCATTTCACGTCATCATGTCGTCGTTTTCTGAGTCTGCATTGGAGAAGAAGCTGTCCGAGCTGAGTAACTCGCAGCAGAGCGTTCAGACGCTGTCGCTGTGGATCATACACCACCGCAAACATTCAGGCGCCATCGTCCGTGTGTGGCATAAAGAGCTGAAAAAAGCCAAAAGCAGCCGGAAGCTGACCTTCCTTTACCTCGCCAACGACGTCATTCAGAACAGCAAGAAGAAAGGACCCGAGTTCACGCGGGATTTTGAAGGCGTCCTCGTTGATGCCTGCTCACATGTAGCGAGagaaacAGATCAGAGCTGCAGGAAGCACATGGAGAGGCTGTTGAACATCTGGCAGGAGCGCAGTCTCTACCGCGCAGATTTCATCCAGCAGCTCAAACTGGCCATCGAGGACTCCAACAGCCCCAGACACAAAGCTGCAGcAGATGAGAAGAAGGGGTTGAAAAGAACGTTCCAGAAGGttcaggaagaggaagaggaagatgatgacgatgatTACAGGGCTCAATATTCTCCGCACGAGACAGACGCCACCGGCCCACAGCTGACGGAGGAGCTGGTTAAAGCCCTGCAGGATCTGGAGAACGCTGCGTCCGGCGACGCCACGGTGCGCCAGAAGATCGCCTCTCTGCCTCAGGAAGTGCAGGACGTCTCTCTGCTGGAGAAGATCACAGATAAGGAGGCAGCAGATAAGCTATCTAAGACGGTGGATGAAGCGTGTCTGCTGCTGGCTGAGTACAACGGGAGACTGGCGGCCGAGCTGGAGGACCGCAGACAGCTGGCCCGCATGCTCACCGAATACATCAACAGCCAGAAGGAGGCGCTGAGCGAGAGGGAGAAAAAACTCGAGGAGTACAAGCAGAAGCTGGCGCGGGTCACTCAGGTGCGCAAAGAGCTCAAGTCTCACATCCAGAGCCTGCCCGACCTCTCGCTCCTGCCCAGCGTCACCGGAGGACTGGCACCGCTGCCCTCGGCTGGAGATCTCTTCTCCACTGACTGATCAGTTCTTCtctcttcatccctccatcctcagTCTGGACTCTGATTCCACCATCACCAGCCGATCAGCTGATACCAGGCCAAATCCTCACcctctggcctttgtgttcggATTttagaagaacaaaaaaatttctGCTGAGTTTTCACCAACACAGCGAACGTGAACGTGACTCTGCTGTCTTATCATTATTAGAatatttttgggttttgttttttagttttttagttttACTGTTTTAGGGTGTGATTTggctttatttacttattaataaTCCCATGAGGTGTCTGTatggcttgcttttttttt

Function

GO: NA

KEGG:

id description
K15559 RTT103; regulator of Ty1 transposition protein 103

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307655 lncRNA downstream 17 23180382 ~ 23181592 (-) True G259897
TU307596 lncRNA downstream 158929 23022414 ~ 23022680 (-) True G259839
TU307595 lncRNA downstream 160039 23021361 ~ 23021570 (-) True G259838
TU307566 lncRNA downstream 163249 23017306 ~ 23018360 (-) True G259812
TU307557 lncRNA downstream 169247 23010849 ~ 23012362 (-) True G259809
TU307824 lncRNA upstream 122709 23309015 ~ 23309614 (-) False e2f1
TU307833 lncRNA upstream 129994 23316300 ~ 23317419 (-) False e2f1
TU307828 lncRNA upstream 146363 23332669 ~ 23335335 (-) False G260021
TU307829 lncRNA upstream 146363 23332669 ~ 23335335 (-) False G260021
TU307830 lncRNA upstream 146363 23332669 ~ 23335335 (-) True G260021
XM_026920929.2 mRNA downstream 54653 23019730 ~ 23126956 (-) False dlgap4a
XM_034312154.1 mRNA downstream 54653 23019730 ~ 23126956 (-) False dlgap4a
XM_026920926.2 mRNA downstream 54653 23019730 ~ 23126956 (-) True dlgap4a
XM_026920931.2 mRNA downstream 54654 23019730 ~ 23126955 (-) False dlgap4a
XM_026920930.2 mRNA downstream 54654 23019730 ~ 23126955 (-) False dlgap4a
XM_034311678.1 mRNA upstream 5951 23192257 ~ 23240347 (-) False LOC113530288
XM_026920135.2 mRNA upstream 12276 23198582 ~ 23240346 (-) True LOC113530288
XM_026920910.2 mRNA upstream 58423 23244729 ~ 23279510 (-) True ctnnbl1
XM_034311580.1 mRNA upstream 122593 23308899 ~ 23317464 (-) True e2f1
XM_034311749.1 mRNA upstream 144943 23331249 ~ 23359264 (-) True itchb
TU306971 other downstream 732182 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1227004 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1826912 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 2011911 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 2313651 20830828 ~ 20867958 (-) False LOC117599256
XR_004579695.1 other upstream 12276 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 577368 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1315427 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1319322 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1601384 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile