RNA id: XM_026921352.2


Basic Information

Item Value
RNA id XM_026921352.2
length 4197
RNA type mRNA
GC content 0.49
exon number 19
gene id phf20b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13700436 ~ 13721730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTCGCCGGAGAAAACAAACTGCGCGGATAAGAGAGTGAGCACGCGGCGCGCGCGCACAGCCACACTGCACTTACTATTGTTCTCAGTGCACTTGGAATAAAAAATTCCGTCAAAGAAAGGTTGGTGTGAAGCACACAGCATGACTAAGACGCCTCCTCACAGGCGAGGGATCACGTTCGAGGTGGGGGCGCCATTGGAGGCCCGGGACAGTCTGAAGAACTGGTATGCTGCCAGCATTGAGAAGATCGACTACGAGGATGAGAAGGTCCTGATTCACTATAGACAGTGGAGTCATCGCTATGATGAGTGGTTCGACTGGAGCAGCCCCTACCTTCGGCCTGTGGAACGAATCCAGCTGCGGAGACAGGGTCTGCAGGAGCACAACATGGCCCCGggttttcAAATCAACCAGAAGGTTTTAGCCAGCTGGTCAGACTGCCGATACTATCCTGCTAAGATCCTCTCCCGTGATAAAGAAGATTCTTACACGGTGAAGTTTTTTGATGGTGTCGTTAAGACCGTGAAAGGGATAAAGATTAAGCCTTTCAGAAAGGAGAACGCAAGCAACAAGCCGGGGCAGCCAAGCCGAAAGCGGGCAGCAGGAAAAAACTGTAAGACCAAAGAAAACAGAAGGAACCATCAGGATGGCGAGACAGAATCGGAGGAAGAAGACTCAAAAGTGACAGACGAGTGCGGCAAGCTTCAGGACACCATGCTGGCTGAAAAGGAGCCGTCAGAAATGGCGAACGGACACGAAGCGCAGGAGGATAAGCCGTCCAGTGAAGAGATGAAGACAGAAGCACAGGAGAACGGAGGAGGGGAAGTGATGGAGATGAACGGAGGAGGAGAAGACGAGGAGAAAGttgaaacacttcagaacgGCGCCCATGAGAGCTGTGGAGAGGGACAAGAGAAAGacgagaaagaaaaagaggccAATCTTGGCCAGAACAGGAGAGCAAGAGGCAAAGTAGCGGAGGGAAAAGACACAGAACGGGCTAGTGTTCCAGAGCTGAGGAAGAGACGTGCGTCCACGGGACAAACTCCTCCATCCAAGAGGAGCAGAGCCAATACTGCAGACAGAAACAGTCGATCCCAGATAAGACCTGCTAGATCAGATTCTGTCCCAGAAAGCCTCAGTGATAAGGATGGTCTCTGCAAGACAGGTCTTCTGGAGAGCCCCAAGCCTGTTGTACAGACAGCGTCTACTCCTGATCTCGCCACACTGCTGCAACGACAAGTCCACCTCCCAACCACCAATAAGTACAGCAGGGAACCATTGTACAGGGTCATCAAGAACCAGCCGCCGCCCATCCTCTCCATCGAACTGGACCATAACCCGTTTAAGTGCCAGGTGCCAGGCTGCACCAAGTCCTTCCGCAAGGCGTCTCTGCTGCACTATCACATGAAGTACTACCACTCTGAGAGCGAGCTGTGCTCTTCACACAGCGCCCACGCGCACACCTCCGAACCTCAGGCCCAggagagccacacacacaccgctgaGACTCCACGCAGACGTCGCACCGTTTCTGCATCACTAGACACTCCGTCCCCGCTGAGTGACAGTAAATCCAGTCACACCCCGTCACCCCATACTGCCAACGGTGTGCATCGTCAGCGCAGCTCCTCCCACTGCGAGAGAAGCAAAGAGAACCAGCACACCAACCGCGCGCTCCATGACGACAGAGACTGGGTCACCATGGAAACAGAacgagagaagaggagagaaaagaagcaGAGGGACTTCTGCATCAAgtcaaagaagaagaaaaagaagaaaaagaggtcCAAGTCAGACTCTCACGGCAGTGATAAGAGCAATGGCTTTAGCTCGTACCCCTGCAATCCAAAACTGTCACTCAAATTGCCCCTCTCCCACAAACACCGCTCCTACGCCGCACACTTCCCCGAACCAGAGCTCGATGATGGTGAAGACAGTGGCAGTGATTGGTCTACAGACAGCCCTCTGTGGAGCGAGGAGGAGTCGGAGACGGGGCTCGATCTGAACACGCCTTTCTCTGAGCAGGGGGTGGAGACGGTGGGTCATGACTCAGAGATAGTGCGCTGTGTGTGCGAGGTGCAGGAGGAGAACGACTTCATGATCCAGTGTGATGAGTGTTTATGCTGGCAGCATGGCACATGCATGGGCCTGTATGAGGACAGCGTCCCTGACACCTACAGCTGCTACATCTGCAGGGACCCACCTGCTCAGAGACAGAGTCAGCGCTACTGGTACGATAAGGACTGGCTCAGCAGCGGTCACATGTACGGCCTGCCCTTCTTAGAAGAAAACTACTCTCATCAGAATGGCAAGAAAATGACAGCCACGCATCAGCTCCTGGGTGACGTGCACCGTGTGTTCGAAGTGCTCAATGGCCTGCAGCTCAAAATGAGCATACTGCAGGCTCAGGCTCACCCAGACCTGAAACTGTGGCGGCAGCCCTGGAAGCCCTCTGACGGCATACTCAGGAAGGGGACGGGGCATTCCGGCATGACCACGCCCTGTCCCTCATCCCCTCATGCAGCGGACTCCACAGACGATCAGCCGGTCAATTCCAAACAGCCCGTGCCTCCCGCCTTCTCCTTCCAGACGTCTTACATCAGCAGCGAGCACTGCTACCAAAAGCCACATGCGTATTATCCAGCACTGGAGCAGCGGCTGGTGGTGGAGACACGCAGCACCGAGGAGCTTCTGGAGCTCGAGACGCGCAAACTGCAGCTGACCAACGCTAAGGAGTTGGAGTGTCGCATGAAGCTGCTGGCGGCggctgaaagagagaagagcTGTGCGGCCCAGGTTAAGGAAGAGGAGCCTGACCCGGAGACCTGTGACTCCAAACCCGACCCCGACCTCCTGCTACACCAGCAGTGGCAACTGAACCTGCTGGAACACATCGAGGCTGTGCAGGACGAGGTCAGCCACAGGATGGATCTCATAGAGCGGGAGCTGGATGTTTTAGAAAGTTGGCTGGACTACACAGGTGAGCTGGAGCCTCCAGAACCTCTGGCGCGGCTCCCGCAGCTCAAACACCGCATCAGACAGCTACTGACAGACCTGGGAACAGTGCAGCAGATCGCTTTGTGCTCCTCATCCACATGAGGGCGTCAGCACACAGCTCTCCTCACAGGTCTCCTCGCAAACCTATAGTACAGGAGagatggaatttaaaaaaagacagacttgAATCTGAACTAAAGAAGATAAATAAGTGGTATCATGCTCTGGGGAGAACTGCGAGCCAAAACAAACCAACCCATGAGacaaaaaggaagagagaaattaCTTGAACGTTTAATATGTTAAAAGGTTTGAATGTAATTCAGGGTTGTGGTTCAAGATTAGGCATCAAttatgcctgtttttttttttttttttctttttttttttttttttttttgaaggactATAATGTTTATGGCATTACACGCAAGGGATATTATTTTGGTTATGAAACAAATTTTTTAGCACTTAAATTTGTTAATTATCCTCATATAAAGTTCTATTTTcttttggttggttggttgatttTCTCCACGTCGTTGCTGATGTTATGCAAAACCACCTTTTCATACGTGACCTGTTTGTCAAGGACTGTTTGAATattcaacatcatcatcagacGAAGAGACTCTGAGGCAGTGACTGGTTTTGCAGCTGTTGAAgtaaacatggaaatgtttaaagGAACATCTATTTTAATCTCAAAGTACTTGCATCTtgcttttatatttgtattaaatagACAATGTAAGTTGCCTATATGTAAACTTTAAttcatgtttttcttgttttgttcttttccaTAACTGTAATGTTATTTACTGTGACTGAGTCtgcattcataataataataatagtaataataataatgataatataacgTTACCTTTATCCCTTTGTAAATTCTGTAGTACTGTTTTTCTCGTGCCAGCCTCGGTTTTGGACATGATCGCTTATATTTGTTTCCtatgaatgaaaatgttttccCTGCCATATTTaacaagcacaaaaaaaagggtatcatatttaatttaaaaaaaaaaaaaaattcacaagcTCTTACAGCATACTGTactgttatttctgtttttttctctttttttttcttccatttccattttagGGCACTAGCTGCCCTTTTAACTTATTGTAACTGAGAATTTAAGTTATtgattctgctttttttttttt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18402 PHF20; PHD finger protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301364 lncRNA downstream 31 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 3816 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 34963 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 85773 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 109466 13590500 ~ 13590970 (-) True G254568
TU301888 lncRNA upstream 809095 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 978494 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 978494 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 1153914 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 1458656 15180386 ~ 15180640 (-) True G255403
XM_026920609.2 mRNA downstream 1394 13635812 ~ 13699042 (-) False ndrg3b
XM_026920605.2 mRNA downstream 1394 13635812 ~ 13699042 (-) False ndrg3b
XM_026920607.2 mRNA downstream 1394 13635812 ~ 13699042 (-) False ndrg3b
XM_026920603.2 mRNA downstream 1394 13635812 ~ 13699042 (-) False ndrg3b
XM_034311624.1 mRNA downstream 1408 13635812 ~ 13699028 (-) False ndrg3b
XM_034311708.1 mRNA upstream 11358 13733088 ~ 13813355 (-) True si:ch211-218g4.2
XM_034311709.1 mRNA upstream 11358 13733088 ~ 13813351 (-) False si:ch211-218g4.2
XM_034311711.1 mRNA upstream 11358 13733088 ~ 13765610 (-) False si:ch211-218g4.2
XM_034311710.1 mRNA upstream 11358 13733088 ~ 13754175 (-) False si:ch211-218g4.2
XM_026920634.2 mRNA upstream 93108 13814838 ~ 13947569 (-) False sulf2b
TU300417 other downstream 1541076 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1559263 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1807434 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1808016 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2131906 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 407486 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 407486 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 407486 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 407486 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 977542 14699272 ~ 14704270 (-) False G255071

Expression Profile