Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026921356.2 |
| length | 1162 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 9 |
| gene id | copz1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 20537706 ~ 20544797 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0002088 | lens development in camera-type eye | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0030117 | membrane coat | cellular_component |
| id | description |
|---|---|
| K20472 | COPZ, RET3; coatomer subunit zeta |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU305574 | lncRNA | upstream | 150893 | 20369995 ~ 20386813 (+) | True | G258097 |
| TU305577 | lncRNA | upstream | 158372 | 20369995 ~ 20379334 (+) | False | G258097 |
| TU305179 | lncRNA | upstream | 428480 | 20108390 ~ 20109226 (+) | False | G257803 |
| TU305180 | lncRNA | upstream | 428480 | 20108390 ~ 20109226 (+) | True | G257803 |
| TU305178 | lncRNA | upstream | 433666 | 20101008 ~ 20104040 (+) | True | G257802 |
| TU305640 | lncRNA | downstream | 22993 | 20567790 ~ 20576789 (+) | True | G258156 |
| TU305646 | lncRNA | downstream | 66744 | 20611541 ~ 20657067 (+) | True | G258162 |
| TU305792 | lncRNA | downstream | 118885 | 20663682 ~ 20680938 (+) | True | G258273 |
| TU305795 | lncRNA | downstream | 137573 | 20682370 ~ 20756538 (+) | False | G258275 |
| XR_004579728.1 | lncRNA | downstream | 152188 | 20696985 ~ 20699668 (+) | True | LOC117599265 |
| XM_026920987.2 | mRNA | upstream | 24328 | 20510244 ~ 20513378 (+) | True | LOC113530729 |
| XM_026921098.2 | mRNA | upstream | 90724 | 20439254 ~ 20446982 (+) | True | hoxc1a |
| XM_034311741.1 | mRNA | upstream | 106653 | 20403301 ~ 20431053 (+) | False | hoxc3a |
| XM_034311742.1 | mRNA | upstream | 106653 | 20415683 ~ 20431053 (+) | False | hoxc3a |
| XM_026920558.2 | mRNA | upstream | 123845 | 20411373 ~ 20413861 (+) | True | hoxc4a |
| XM_034311779.1 | mRNA | downstream | 41370 | 20586167 ~ 20610713 (+) | True | lima1a |
| XM_026920825.2 | mRNA | downstream | 41370 | 20586167 ~ 20610713 (+) | False | lima1a |
| XM_034311781.1 | mRNA | downstream | 41392 | 20586189 ~ 20610713 (+) | False | lima1a |
| XM_026920824.2 | mRNA | downstream | 44920 | 20589717 ~ 20610713 (+) | False | lima1a |
| XM_034311780.1 | mRNA | downstream | 46889 | 20591686 ~ 20610713 (+) | False | lima1a |
| XR_003403172.2 | other | upstream | 23511 | 20510244 ~ 20514195 (+) | False | LOC113530729 |
| TU305571 | other | upstream | 138992 | 20390809 ~ 20398714 (+) | True | G258096 |
| TU304946 | other | upstream | 1058811 | 19478302 ~ 19478895 (+) | True | G257622 |
| trnae-cuc_34 | other | upstream | 1504718 | 19032917 ~ 19032988 (+) | True | trnae-cuc_34 |
| TU304341 | other | upstream | 1625992 | 18879568 ~ 18911714 (+) | False | fmnl3 |
| XR_004579743.1 | other | downstream | 358308 | 20903105 ~ 20907250 (+) | False | ubxn10 |
| TU305940 | other | downstream | 358350 | 20903147 ~ 20905073 (+) | False | ubxn10 |
| TU306101 | other | downstream | 683523 | 21228320 ~ 21230871 (+) | False | si:ch73-290k24.5 |
| TU306357 | other | downstream | 993457 | 21538254 ~ 21542254 (+) | False | LOC117599233 |
| trnal-uaa_2 | other | downstream | 1767009 | 22311806 ~ 22311888 (+) | True | trnal-uaa_2 |
