RNA id: XM_026921359.2


Basic Information

Item Value
RNA id XM_026921359.2
length 3259
RNA type mRNA
GC content 0.47
exon number 7
gene id syt6a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19900014 ~ 19965413 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCACTGACACACATATCTCTGCACTGAAGATGTTctggcgcacacacactcagagacatACTCTTGAGAGACAGCACAGCGTTCATGTGGACACAAGGGTGCAGCTCGGCGAGCGTATGTGTGCCGATCCCTCCAGAGGAGCCCGTCACGCCGTCACACTGAGGATGCGTCTAGGAGCATGAGCGCCATCGGGAAGGAGCATGACATGGTGTGTGAGAAGGCGGTGGCCCTCATAACTGACCTCTGCATGCGCGAGAGCCCCCTGTTAGAGCACAAGACCTGCGAGGAGTTTCTCTTCCTCATTACCAACCAGGACTACAGCCTCAACCAACCCGACGTCACTGTTGGCATCCCCATTGGCGTGCTAGTGGCGTGCAGTTTGGCATTGTTGCTACTGGTGGCGTTAGCTTCCTGGAAACTGTGCTGGATACCTTGGCGCGATAAGGCCGTGACGTCCTCCAGTTCCGTCGCCCTAACCACGGACAGCTACCCGTCCCTTCAGCCGCTGTCACGTGCACCCAGTCCCCAGCAGCCCCTGGTTGGCATGGCCatggagaaagtgaaggagTCGCTGACACCCATGGGCTTCCTGGAGGCAGCTGTGAAGATCAGCCACACGTCACCTGACATTCCAGCAGACGTGCAGCTCTCCATGAAGGAACACTTCCTGAGGCGCACACAACGCATGCAGAGACAGACCACAGAACCAGCCTCATCCACCAGGCACAGCTCTTTCAAACGTCACCTGCCCCGGCAGATGCAGGTGGGAAGCCTGGATCTGGGAGACGACTATGTGGATATGGACGAGCAGCCCACAAGCATCGGGCGCATCAAGCCAGAGCTCTACAAGCAGAGTATGCTCGAGACCGAAGAGTCAGCCAAGAAAGGTAGCGCCAAGACCTGTGGTAAGATCAACTTCTCACTGCGCTATGACTACGAAAACGAGACACTGCTGGTCCACGTCCTCAAAGCCTTTGACCTGCCGGCTAAAGACCTCTGCGGCAGTTCAGACCCCTACGTCAAGATCTACCTGCTGCCTGACCGTAAGAAGTTCCAGACGCGCGTCCACCGCAAGACGCTCAACCCTACGTTTGATGAAATCTTCCAGTTCCCAGTGCCCTACGATGAGCTGCACGCCAGGAAGCTCCACCTCAGCGTGTTTGACTTTGACCGCTTCTCCCGGCACGACATGATCGGTGAAGTCGAAGTGGAGAACCTGTTCGAGGTGTCAGATCTCTCCCGGGAGACTTCCATCTGGAAGGACATCCAGTACTCCAGCACTgagaGCGTGGACCTTGGGGAGATCATGTTCTCGCTATGCTACCTGCCTACAGCTGGAAGACTTACACTCACTGTTATCAAGTGCAGGAACCTCAAGGCCATGGACATCACAGGATATTCAGATCCCTATGTCAAAGTGTCTCTCATTTGTGATGGGAAGCgtttgaaaaagaagaagaccaCCATCAAAAAGAATACACTCAACCCCACCTACAATGAAGCCATCATTTTCGACATCCCCCCAGAGAACATGGACCAAGTCAGCCTGCACATCTCCGTCATGGACTACGATCTGGTGGGTCATAATGAGATCATTGGCGTGAACCGTGTTGGGTGTGGAGCGGAGGGCCTCGGCCGAGACCACTGGAATGAGATGCTGGCATACCCGCGCAAACCTATTGCACATTGGCACCCCTTGCTGGAGCCCAAGAAATCAGAAAAAGAGTGGAAAACCAGGACGGCTAGTTTTGACAGTCAGGGCTCATGCCCTTCCCCCAAAGCACCCGCCAGCCCTTGAATGGAACCACATGTGACCCATAAGGCCTGGCTCCCtttcctgctgtctgtctgtgtgcccgaggataaaaaaaaaagcaacaaaaacaaaaccagaacATAAAAATCCCTGCCATCTCCAGGTCTCCTCGGTTTCTCCAGGGCTTCTAAGCACCAATTTCTGCAGTATTTGTCTAAAATCTCTGGAGTCCGAACCCTGTTTTGCAGTCAGTTCTTGGAGGCCTTGTGCACAAATCTTTAATGAAACGCGACACCTTTTTGGTACAGCAGAAGAATTATTTTCCTACCTTCAAAAGGTGGATGAAATCTGACCATAACGTTATCAGAAGAATCACTTCAAGAGATTGAAGTTTTCCTTGCAAGATGATCACATTACTCAGCGCTCATTGCTTGAAAAAAGGATGAGCTTATCTCCGAGAGCAGAGTGTCTGAGCAGTTAAAGGAAGGATAATTCAAGCCAAAATGGAAAAAGGACTCAATCTAGGGCAGTGAGAACTGATATCAGTAGAGGAGGAAAATGAATTGTCAGCTGTTATACAAGAATAAACCTCTCCAGATTCTTTTGGGAAGGAAAATCAGACTTAACACTGATGTTCTTGTGACTTTTACAATAGCCGCCCTGAGCTTTATTGATGTCGTAAAAAAGAATTGTGTTCGttatgtcatttaaaaaagagcCGTTTGCCAATTTCAGAAGAGCACAATGATCTCAAGTGCTTTCCTTACTGTCTAAAGACCTCCAAATAGAGATATTTTAAGGTTGGCTTGGTGTTATTGGTGGATGATAGAATAGAAAACTACACATTTAACTCtgttaaattaatacatttatttaacaaatgttaGTACTCATGTTCTCAGTAGTCTCTCTGTAGTTTTTGAACTCCATTTGAACTTTCTGCTAAAGACGTAGTTTTATAGTTGAAGCTCATGTTAATCTGTTTTTGCTGTCAATTAATCAACAGTTGTGTTCAACAATCGGTCATTAGTTTGTTTGATATGCAGTACTGGATACAgattttatacagaaatataaaggGCACACAGTGAAACTTATACGGTTAACAAAGTAAACTTTTCTTAAGCTTGACCCAATAGGAGCACAAAATGAAGCACCGTAAAGTGTGTACAGTTACTGTACAGTAATACGATTAACATGTGGAGTaacaaaaatatctaaaaaatcATTCATCTGAGGAAGATCTAAATGACAAACTATTAAATCAGGACTTAATTATGAATCAAGTATGAATTAGGAAATTTGAAGCCTGAGTGTTATGAATTACACAAATAACACTTATGATAAAACTTTAGAGGCCATTTAGACTCCTCAGAAGGCACTGTGCACTCCAGCAGTTTACCAACAAGTGCTCTACATATGAGGGATTTATTCATTATTGCTATAATAACTTGGCTGTTGACTGTATTTGTCATGCTTAACAAACAGGTCCATTTTTTATA

Function

GO: NA

KEGG:

id description
K19906 SYT6; synaptotagmin-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305053 lncRNA upstream 154068 19743485 ~ 19745946 (+) True G257713
TU305050 lncRNA upstream 164801 19733351 ~ 19735213 (+) True G257710
TU304997 lncRNA upstream 194951 19631599 ~ 19705063 (+) True si:ch73-206d17.1
TU305000 lncRNA upstream 233429 19660638 ~ 19666585 (+) True G257671
TU304947 lncRNA upstream 418439 19481110 ~ 19481575 (+) True G257623
TU305143 lncRNA downstream 42539 20007952 ~ 20008154 (+) True G257781
TU305133 lncRNA downstream 43226 20008639 ~ 20010104 (+) True G257774
TU305175 lncRNA downstream 92838 20058251 ~ 20070248 (+) False LOC113530699
TU305176 lncRNA downstream 92838 20058251 ~ 20070248 (+) True LOC113530699
XR_003403167.2 lncRNA downstream 93003 20058416 ~ 20070248 (+) False LOC113530699
XM_034311905.1 mRNA upstream 51352 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA upstream 51353 19840853 ~ 19848661 (+) True zbtb48
XM_026920865.2 mRNA upstream 51353 19840853 ~ 19848661 (+) False zbtb48
XM_034311906.1 mRNA upstream 51353 19841695 ~ 19848661 (+) False zbtb48
XM_026920800.2 mRNA upstream 105017 19784571 ~ 19794997 (+) True zgc:158263
XM_026921316.2 mRNA downstream 72008 20037421 ~ 20043667 (+) True sdf4
XM_026920527.2 mRNA downstream 154537 20119950 ~ 20127658 (+) True ccnt1
XM_034311543.1 mRNA downstream 164293 20129706 ~ 20138298 (+) True pmelb
XM_034311545.1 mRNA downstream 181765 20147178 ~ 20150405 (+) False LOC113530927
XM_034311546.1 mRNA downstream 183239 20148652 ~ 20155096 (+) False LOC113530927
TU304946 other upstream 421119 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 867026 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 988300 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2779073 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3391634 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 425396 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 544831 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 937692 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 937734 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1262907 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile