RNA id: XM_034312115.1


Basic Information

Item Value
RNA id XM_034312115.1
length 8511
RNA type mRNA
GC content 0.41
exon number 22
gene id myt1b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12995420 ~ 13028887 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGTTCTACTCAACTGGCCACAACTTTTTCCTCACAAGTTTAGTTTCTTAGCGCGTTGCCCGCTCGCGCGTGGAGAGACACTGGACCGCAACCATGAAGCTCTGTGGGACTTTCTTAGaGAATGAGTATCGGGGCGAGCTGGTGAATCAGCGCTGGACGCGAGGAGACAAGATCAGCCGCTGCCAGCCCTCTCTCAGACCGCAGAATCGTGCAATCAAAATGAGTTTGGACATTGATGACAAGCGTGCATGCACACGGTCCAAGGGAGGACGAActcCCACTGAGATTATAGTCCAGGACCTGAGCTGCCCCACTCCAGGATGCAATGGTTCTGGTCATATCAGTGGCAAATATGCACGGCACAGAAGTACAATGAGCTGCCCCATAGCCAGAAAGAGGAGGctccaggaggaggcagagCAGAATCACTCGCCCTCCAAGAGGAAGTCCCACCCACTGAAGCTGGCAATGGATGGGCGCTTTAATGCAGAGAGTGAGGGGAGCAGCGAGGAGATGGACGTAAAGGAAGAAGACGAGGAAGTAGAGAGCGAAACTCATCAGCAGTATGGCAGTGAAGAACATGCAGGCGAAGAAGAGCAGGAAGCTAGGAGCAGCAGCACCAATGAGGGAGAAGCAggtgatgaagAGGAGTGCATGATCATTGAGGCATCCTGCACAAAGAAGGCTAAATCTGTCGAAACAAATGACCTTTCCAATTATGAGCATATAGTAGCCAACTCTCTACTGCACCTCAGCAGCCACAATAACCATACCACAActccacaacaacaacaacaacaacaacaacagcagaagcagcagcagcagcaacatcCTGTAACCATAGGGGCAAAGGGGAATAGTTCAACCAGaacagaagaggaggaaaacaatgagggaaagagagatggaaagaaagatgaaagCCAAACAACAGCTCAAACATCCACAATGAATGGAATGAATGAGAAAACAGAGGAAGAGATGGTGAAGGAGGTAGAAAATGGAAAGCAGGATGAGTCAGACCACCAGTACTTCACAGAGGAGATCAGTAAACAGCTTTCAGAGGATGACAAGAAGCCACAGGTAGAGAAAACCTGCAAGGAGGAGTACAACAAAGATGAAGATGCGAATGATCAAAAGTTGGAACAGTATGATCTCTCTGACCCCTCTGTGAATGTTGAAACTCAGGGCTCCCAAAAGGAGGACTACAGTACCCAAAAACCCCTATCACCACAGAGCTGCATGTCCAGCCAGGCCTCAGCAGCTCCCATGATCATTGAGGTGCGGTCTGAGGAATCAGACAAGGATGATGAAAATAgggatgatgaagaggaggagcagTCGATGATTGCCGACGAGTCAGAGATGTATGACATGATGCGGGGGAACCTGAGGCTTTTAGAGCAGGCTATTGCTCTCAAAGCCCAGCAGGTCAAAGGTAACAGAGAGTTCACACCCATCTCTGAACATCATCGCTACTTCCCTCTAGACGATCAACCAGCCAAACACATGGAGCTGCTGCGCAAGAGTTACTACTGCAAAGAAAGTTCCAGGCCAGAGAAGAGAGAGGTCAAATGCCCCACCCCAGGCTGTGATGGCacaggtcatgtgactggtCTGTATCCTCACCACCGCAGTTTGTCTGGCTGTCCTCACAAAGACAGGATCCCCCCAGAGAtccTAGCCATGCATGAGAATGTTCTGAAGTGCCCTACGCCTGGCTGCACAGGACAAGGCCACGTCAACAGTAATCGCAACACACACCGCAGTTTATCTGGATGTCCAATTGCCGCTGCTGAGAAGCTGTCCAAGAGCCACGACAAGCAGCAGCTGTTGCAGCCAATGACAGAGCAGCCCAAAGGTAGCCCAAACCCAGAGAGAGTTCTCAGaccCATGTGTTTTGTGAAGCAGCTCGAGATGCCACAGTGTGGCAGCTATAGGGCAGCCAGCATGGTTCCCAACACACCCCGTGCTAACCTGGCTAAAGAGCTGGAGAAGTACTCGAAGGTGTCCTTTGATTATGCAAGCTTTGATGTGCAAGTGTTTGGCAAACGTATGCTTGCCCCACAGATACCCACTAGTGAAAGCTCACCCAAAGTTTTCAAATCCAAACCTTCATTCCCAAGGACTTCTCCCCCAAGTCCCAGCATGCAAAGCACCTATGGAAAAAGCTCGTGTGGAGCCCATGATTACTCCCATGATGCTGAGGCTGCACACATGGCCGCTACAGCCATTCTAAACCTGTCTACTCGGTGCTGGGAAAGGCCTGAGAACCTCAGCACCAAACACCAGGATAAGAACATGGAGATCGAGGTGGATGAGAATGGCACTCTAGACTTAAGTATGAAGAAGCCCATAAAGAAAGAGGGAGGCCCACTGAGCACAAGCCCAGGCATGCGCTCCCCTGCCCtctcttcatcatcctcatcatccggGCACCATGGCAACACAGCCATCTCACCCCACTTACAGGCCTACAAGCAGGAGGAGTGGGAGGGGCCTCTGGATTACACCAAACCTAATCGGCAAAGGGAGGAGGAGCTAGAGGAGatGGATCATACTGCCCAGTCTTTTGTCTCCTCTGATGCTGAGGACTGTGACACAGCACAGGAGTGCCCGGAGGACAGGAAGTATCCTGGAGAGGTCACAACCCCCAGCTTCAAAGTCAAGTTCCAGCCCAGGGAGTGCAAGAAAGAGCTCCTTATGTGTCCCACTCCTGGTTGTGATGGCAGTGGCCATATCACTGGAAACTATGCATCCCACCGCAGTCTGTCTGGGTGCCCTCTTGCTGATAAGAGTCTTCGTTCCCTCATGGCAGCACATGCAACTGAACTCAAGTGCCCAACCCCAGGATGTGATGGATCTGGCCACATCACTGGTAACTACGCCTCACACCGAAGGTGCCCAGTACCAGGCTGTGACAGTCTGGGTCATATCAGTGGGAAGTATGCCACCCACCGCAGTGCATATGGGTGCCCACTGGCTGCACGGCGCCAGAAGGAAGGCATGCTGAATGGCACACCTTTCTCCTGGAAGGCCTTCAAGACGGAGGGGCCCACCTGTCCCACACCAGGCTGTGATGGATCAGGCCATGCCAACGGCAGCTTCCTTACTCATCGCAGTCTCTCCGGCTGTCCCCGCGCCTCACTGGCTAAGAAGAAAGCCAAGTTTCCTGGGGAGGACTACATGAATACCAAGTTTAAGGCCAGCGATGtgcTAGATAATGATGAAGACATTAAGCAACTCAATAAAGAAATCAGTGACCTCAGTGAGTCCAACAACGAAATGGAAGCCGATATGGTCAACCTCCAAACACAGATCTCATCCATGGAGAGAAACCTGAAAAACATTGAGCAGGAGAATAAGATCATTGAGGAGCAGAATGAAGCACTGTTTATGGAGCTGTCAGGACTCAGTCAAGCTCTGATACGCAGCCTGGCCAATATCCGTCTGCCCCATATGCAGgaaccaatcacagagcagaaTTTTGAAAACTATGTGAGTACTCTGACTGACATGTACACCAATAAAGACTGCTACCAGAACCCCGAGAACAAGGCCCTGCTGGAGACCATCAACCAGGCAGTGAAAGGCATTAAGGTGTGACGTGAGGCATCGCCCACTAGAGgcatagaagagaaatgatgtgTGTAGATGCAAAGAAAGTACATGCAAATGGTACACACAAAAATGGGCATTCAGCTGTTTTTGAATAATAACAGCCTTCATCCCAGGGAGCATTCTGTgacaagagaaaagagaaatatgtaTATAACATATTCGTTCCAAAATCCACAAACACTGCTGGATTGGAAGCAGAGGATGAAAAGACCATAACCAAATCCTTCTGTTTGgccagaggggaaaaaaaagagaagcttgtttttgcttatttttaccACACAATTAAAGGAGTGTTGCATGTCATTGAGAGTGAAGCTGAGGATGAAGAAGAGAATGTGTACTTCAGCATTAAGAAGAGCCAACTCTTTGGATGAAATTGTctttgtattgtgtatgtggGACTACTGGCCCTTTATCACAGCAGATGCAGCACTTCCTGTAGTGACTCACCACAGCTTCAGGTCATTGAGGTCCATTGTACCTGTTCGCCACAAGCTCATGTGCACGCTCTACTCACAGAGAGAACACAATGTGGGTCTTTAAGCTGTGTATTATTCATATCAGATACCATCTGGTtaacactacagtgtaaacgtCAAACCACACGCCTCCAAATTTCAgccattatatttataaatatatattttattattagttctAGATAAACGGTTagattttaatactttaaatacCTGTAGATTGCAGAAGCACTAGttccttttcattcatttgcattatttatgcTAGAGTAATATAATGTATTGCTACTCAGTTAAATCCAGTCATATCTGTTATATTTATCAACAATGAATTGCACTTCTTTTCAATTAACAGTTTATAGGTTTCATTGTcaatgttttataaattattaacattaatttatgTTATGTATTCTTCTTTTAATATAtgtaacattcatttatttatgtatttatatttttcatgtttttattgtttacttttttatttatttgaactcACCTCctgcattgaaaaaaaaactaatatgaaACAATGCAACATACCCCTTCCAtcttaaaatgaacacaaatataaaataataagaaaaacttttaaaactattttccGTTTTTTTTATACCTGATTTTCTTTTGAcaatagatttttaaaactttttttaagtgaaaatattttgaactgACAAggttttttataattaaataaggctgtcattttcttttccattatAGATATTTTTTCCAAAATCCTGAGAGATCCAAAACTTATGGAGAAGtataatgtgtatttattatttattttatatttatgaactAATGAACTGTGATAcgattgtactgtatatttattttgtaatgtttctgtgtgtattatGAAAGAGTCTTAGTAGTCTCGTActtaaataaagacagaaaagtcACACTTGGACAAAAACAAGGTTCTTCAAAATGCCAGCAACACTTTCCATGGGAATGTAAAGACAACAAAAAGCAATTCTTTGGAACTCAGAGCTTCCTGTGAGTTTAAACATGAAAAGTATCGTAAAAGGAAGTACAATTTTCTGGAATCTCTTTTACTGTGTTTTACAACTTCAAGCTCATGGTTTTGCCAATGATGCTCGATCTGTCCAGAATGGCTCTTAAATGATGACGACTGATGATGGTTTTTCCTCAGTTGGTCTGTACATTTAGGTACTGAGATATATGTTGAACTAGGATGGAAAGAGGGGTATTTATTGGTAAAATTTGATCAGATGTATTAAGAGAAACCTTTGATCCACAATGTCTTTACTCAGCTAGTGTCAGATGAGCATACACCCACGTAGCCTTattcttgattttatttttttattttaaaaatgcaaaaagtgcCACTAACCAacactttttttcttaactCCTCCCATTCAGCAACCACACAATTACTTGAGTCACATGATGTAAGATGTGTGGTAATTGTTACAGTTGCCTTTATTTTCTTGCCAATATGGCCATGACTACACTATATATAcattctgtattaaaaaaagacaaaacaattaTATAGAGAATATAAAAACGTACATATATTTTTCCAGTGTAATTGTTAACACTTACTCTTATTGTAGCTTATCAAAGAAAtatcttttgaaaaaaaaaaactgtgactATTACTAccaataggaaaaaaaaactaatgacCCATTTTACTGTGGTGGCAGGATACaatgtgttttataatttacataggtacatttttaaatctgaaaatgttAGGGTTGTTTGTAAAATTTCCTATTTTTTGAGGTGTATTAGGTCCATGGTGGTTGGGCTTCTCTATGTATGTCATGCTCATGGGACAGTGGTGTAATGGTAGTCAATTCTTTACCCATCTTGGCATTACACTGGGTCTGTGAAGACTCATCATAGCCTGTGAAGACTTATCATAGTGTGCTGAAAAGGTGGTGGTCCTTCCCCTAGtattgtgtggtgttgtgtCAGTTCTGGTGGGAGCAGCCTTGTTTAGTTATTTGTCTCCAATGCTAAATGTGATAAAGAAAGCAGTGTGATTGTTGTTAGCGAGTTGTGAAATGAACATTGTGCCTCCTTATATCACCAGAATTTTACGTCTCCACCTATATGCAGTAGAAATAGGCATGTTGCTCATTAGGTGTTATAAAGGTGAGATTATGCAGAGATGGTGTGTGcccttttaaaaatattgttaagTACCAGTTGAAAACTTACCAGTTGAAAACTTACCAGTTGAAAACCAAAAGATTTGAAATACGAAAGAAAGATTCATTTTAGCTAATGGACATCTATCCATCACACCAAAAAGAATTGGACAAAAATGTGTATGTCTTTTATGTTTGTTGATGTCCACTGCAATACTGTCTATGATGTGTAGGATTAACTTTAATTCAGTATTGAGGATCTGTTTCAACAGGCTTCAATTTGAGCATTTAAAAGGGTGAGGTCATGAAGTTAGAGCAGCTAATCTAAACAGTTTGGATCGAGCTCTGGACCTGAATTGAATATAAGGGGGGAAAACAAGGTAGAGgttaagcatttttatttgtcattgaTATGCTGCTCGacttctctcactcttttacTGAGAGAATGGAAGAGATGTCAGTTGCATAAATTTATGTCCATTTTGTATAATGGCCCTGGCCTTATCCTCTCCTTCTCTGTAACCTTTTCCCGGGAAAGATGTGGCATTGCATTTCAATGTGAAATTGCTCACTACTGTTCTGCTTCAACAGAATATTAGTTGAGAACTTGGGGAATTGAGGTACTCTTGTAATCTTTTTTGCTGTAGTACCAGCTCATCTTTAAGAGGCAGAAGTGAAGCTTGATATTCCCAGTGCTAGGATCCCGATGCTCTGCTTTTTCAGTAATAAACCACTTTCAGTTGAACACGTTAACTTATTATCAAGAAATCACAAGAACTGGTGCATACGATTGTCATGCCTGGGATAAGGAATTCTAGCCCTAAGAAATTAATGGAATCTAATGGAATCTTTATTGAACATTCTGATATCTGCTTATTACTACTGACATACCATAAAGCATGTATGAGTTAACATACACTACATGCTGTTTAATCAACGTGGTCTCGCATTTgcaaattcataaatattttttaatatgaattaaCTCAGTTATATATTTTCTTACCATTCACATGACAGTCATGTAACCAGctttctaaatgttttattgtttatgaatGGTAAATTTGATCAAGTTTCATAATGTAGCCTGTTTTCTGAATCATTAAGCCATCTCATTAAGCCAAGTGTAGCACTATAATTGTGTTTCCCCATTCAAAGCTCACAGAATTGAATGACCTGGATAACAGATAGAGTATTGAACATGAGATAGAGTAACCACATCAAACTAAACAGTATAAGTAAAATACTAGTCTTCAAGGACTTCTTGGAGTTGGATTAGCATTAAAAGATAGTAGGCCACAATGTCCATGGTCATGGGTTCTAAATACATACTGAGTAGGAAGGCATGTTTGATAGAATGTTTCCCATTAAGCTGATGTAACCAAAATGGCCCTCTATTTGTAGGCGCCATCTTATCCTACAGCTCTGTGGTGTTCTCATGTGTGCCTTTTCTTACTTCACTTAGCTGCAGGAAAAggtgtgtttacattttgaaTAATAAGTTTAATCAACACTCAGGGTGCCATTTTTTCAGGGTCTGAGAGGCATTGGAGACATAAGTACTGCAAGTTACTTTAAACTGTCaccatttatgtattttttttcttttacatgaaaaaaacataatatatcTACAAATATTCTTCccaaaaacacttcagaaactGTGACACAAATTCATGCTGTTAACTACACTTGGTTATTGATTGGTTATTTAGGGAATTGAGGGAATTGTCAAAGGTGAAGCAGTTGTGCACAGGGCATTGTTTTGACTGCAGTAGGAGTCTGTACATTTGTAATAAAGGAACTGTGttgtattaattaaacaatattttccaaaaatgacaaaaaaaaattgcttgtgACGTTATCTACAGCCAAAGCTTGTCCTCCTGAGTCCTTTCTACAGAGATGAAGTATTTTTGCTGGTGATTTTGTAGACGTTGGTACTTCCAAAATAATAAGCAGTTCCTTGCATATAGATTGTATAGATTTTCGTCACATTTCTTTGCGAACATGTTTTGTAGAGTGGGACAGGCTGTGGCTGTGGCACTTTCACAGCTTCATTTGGAATGTGTGTAGCTGGGTTTGGATTGtgactgtgtttgtgtactCTTGTATCTGTGCTCCTCCATATTAATGTTACAGGAACAGCAATGTCTTTTGTTGTGGAAACAtcttttaatttgttcattcCAGTGTTATCTATGGACAACTTGAATAAAGTGGACAAAACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300854 lncRNA downstream 25409 12968364 ~ 12970011 (-) True G254107
TU300857 lncRNA downstream 62281 12932725 ~ 12933139 (-) True G254110
TU300856 lncRNA downstream 63000 12932219 ~ 12932420 (-) True G254109
TU300848 lncRNA downstream 71408 12923719 ~ 12924012 (-) True G254101
TU300819 lncRNA downstream 93143 12897542 ~ 12902277 (-) False plagl2
TU300905 lncRNA upstream 112124 13141011 ~ 13141219 (-) True G254153
XR_003403150.2 lncRNA upstream 172132 13201019 ~ 13202631 (-) True LOC113530405
TU300928 lncRNA upstream 222253 13251140 ~ 13251353 (-) False oprl1
TU301036 lncRNA upstream 399403 13428290 ~ 13488493 (-) True G254270
XR_004579752.1 lncRNA upstream 435304 13464191 ~ 13465215 (-) True LOC117599295
XM_026921111.2 mRNA downstream 8283 12975444 ~ 12987137 (-) True LOC113530792
XM_026920426.2 mRNA downstream 61112 12897474 ~ 12934308 (-) True plagl2
XM_026920427.2 mRNA downstream 91413 12897474 ~ 12904007 (-) False plagl2
XM_026921371.2 mRNA downstream 340599 12615024 ~ 12654821 (-) True slco4a1
XM_034311548.1 mRNA upstream 222445 13251332 ~ 13257726 (-) False oprl1
XM_026920113.2 mRNA upstream 222446 13251333 ~ 13283885 (-) True oprl1
XM_026921347.2 mRNA upstream 411897 13440784 ~ 13451374 (-) True tcea2
XM_026920173.2 mRNA upstream 597011 13625898 ~ 13632021 (-) False sla2
XM_026920172.2 mRNA upstream 597011 13625898 ~ 13632021 (-) True sla2
TU300417 other downstream 836060 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 854247 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1102418 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1103000 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 1426890 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1100329 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1100329 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1100329 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1100329 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1670385 14699272 ~ 14704270 (-) False G255071

Expression Profile