RNA id: XM_034312213.1


Basic Information

Item Value
RNA id XM_034312213.1
length 4819
RNA type mRNA
GC content 0.45
exon number 13
gene id slco4a1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12615024 ~ 12654821 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCAAGCTCAGTATCAAAGCAGGGACGCTGAAGGTGTGAGACGTCAACGCTACCCTCTGCATggGATGATGTCTTCCTACCTCCAAAGCACTTCTGCGCCTCCTCATGGTTTGGTGTAGCACCGATATCTGAACTGCAGGTCTCAACTAAGCTCAGGTAGAAAACgacagcataaaaaaaaatcaagaaccAGGAAGCTGGACTTGATATTCATTGACTTTACCCCAAAGTAaacttttagtgtttttcctgaaGGGGCCATGCCCCACCTGCTCAACAGTGACAGTTCCTTCAGCTCCAGGCAAGAGCTGCTGGACCTGCAGGATGGACCCGTGGGCCCCTGTGTGGACTTGCCAAGCCCATTGGAGTCACAGGTCAGCACACCTGCTGGCTCCACCCCTTACCGTCCATCCATAGATGCCCCCATCAATACGACCAAGAACAGTGTTAGTCTAGCTGGGGCAAAAGTGGGGGATAATTATCTGTCCTCGGATACAGAGAACCTGTGTGGATGGGGAGCTCTGAGCCCCAATTTCATCCAGGGCTTCAACACGGCCCGCTGGGTGCTCTTCTTCTTATGTGTGGCCTCATTCCTCCAGGGTATGATAATCAACGGTTTCATTAACACCGTCATCACATCCATTGAGAGACGCTTTGACCTGCGCAGCTATCAGGCCGGGCTCATTGCTAGCTCCTACGACATTGCTGCCTGCGTGTGCCTGACGTTCGTGAGCTATTTTGGGGGCACAGGGCACAAGCCCCGCTGGCTGGGCTGGGGAGTTTTCATAATGGCTCTGGGCTCGCTCGTGTTTGCACTGCCGCACTTCACCACGCCAGATTACCAGCCCAGAGTACTGGAGCATACGGGGCTgtgctcagccaatcagacagAGGAGTGTGGGGACGACAAAGGAAGTGGACTCTCATTGTACCGCTACATCTTCATGCTGGGCCAGTTTCTGCATGGAGTTGGTGCTACACCGCTGTACACACTTGGCGTCACTTACCTGGATGAGAATGTCAAGTCCAATTATGCACCTGTCTACATAGGTATCTTCTACACAGCAGCTATTATAGGCCCGGCAGCTGGATATTTGCTGGGTGGCTTCTTCCTCAACATATACACGGAAATTGGCCAAATAACTCTGCTGACCCCAGAAAGCCCACTGTGGGTGGGGGCATGGTGGATTGGCTTCCTGGCAGGAGGAGCCGCTGCACTCATCACTGCTCTACCCATTTTGGGCTATCCTCGCCAACTGCCAGGCTCTCAGCGCTTTATAGCCATGCGTGTGTCTGAGGCTCATCAGCTGAAGGATGGAAGTCAAGCGACCGCCTCTGATCCCCACTTTGGAAAGACAGTAAAAGACATGCCTAGgtcagTGTTGCTGCTGCTAAAGAACCCTACGTTTATTTTTCTATGTCTGGCTGGTGCTACAGAGGCGACTCTAATCGCCGGCATGTCCACTTTTGGGCCCAAGTTCCTGGAGTCTCAGTTCAGTCTTAGTGCCTCCGAGGCAGCCACCTGGTTTGGCTACATGGTGGTACCCGCTGGAGGGGGCGGCACCTTCCTGGGTGGCTACATTGTGAAGAAGCTGAACCTACGTTGCCGTAGCATCATCCGCTTCTGCATGCTCTGTGCCCTGGTGAGCCTTGTGGCCGTCTTCGTCTTCCTCCTACACTGCCCCAACGTGCCTATGGCTGGAGTGACCACACCATACCAGAGCAGCTCTCAACACATCAGCTCCTTCTACACACAGCGTCAGAGCAGtTTTGCAGTAGGTAGGAATTTGACCGTAGACTGTAATGCAGAATGTCACTGTGTGGAGGCGCTGTATAACCCAGTGTGTGGAGCTGATGGTGTGATGTACTACTCTGCCTGCCATGCTGGCTGCAGTGCCGTCAACAACACACTCAGGCACACAGGAAGACAGaTGTTCACAGACTGTAgctgcattatgggtaatatgTCAAGTGGCGAGGAAGGCCTGGCCATAGCAGGAAAGTGTAGCTCCTCCTGTAACCACATGCCAGCCTTCCTcaccttcttcttcatcatcatctccttCACCTTTCTGTGCAGTATCCCTGCTCTCACAGCTACTCTGAGGTGTGTCCCTGACAGTCAGAGGTCATTTGGACTGGGCATTCAGTGGATTGTAGTGCGAACACTGGGTGGCATCCCAGGTCCAATAGCGTTCGGTTCAGTGATTGACATCTCATGTCTGCTGTGGCAAGAGCAGTGTGGAGAACGTGGGTCCTGTTACCTTTACCAGAATTCTGCCATGAGCCAATACACACTCATTGCTGGCCTCATCTACAAGtTTTTGGGCACTGTATTCTTCATGCTGGCAAGTGTGCTGTACAAGCCTCCTCCAGAATCTCCTCAGAATAGCTGTGAGAACACAGACCACAGTGCAGCAGACAAAGGTGTAGAGGTTGGACACCTGCCAGTCAAAGACCTCCCACCTGAGATCATAGCCAACGTACATGCCAAGTTGTGACCTccaactccaaacacacacctgcatgagtgtgtgtgaatatgtgcgTGACCATCAACTTTATCACAACCTCAGACACATGAACCTGCACTGTGGTTATTATGTCTTCATTTGCACACAAATTGGGCCAGGCATGCCTCGCACAAATATGATACATCTGATACGTAAAGATCATCTGATACtgcaaacattttgcagatggATCACATTTGTCCTTAATGAACTGTTGATAAATGCTGGAAGATGCAAAAGAAGGGACATGGGTCATGTATTAAATGTTCATGTTTGATCAGtatattttagttattaaaatTCTTTCTGACAGCCCAAGTTATCATAGATCAGAGATTGTAAGCTCAGTCCTAGAGGCCCACCACCTAACACAGCAGGTCCAACTTATGCAAGGCTTGAGAAATTGCTCATGAGTTGGATTGGGTGTGTTTGGAGCAGGGAGATGCTACAGGGCACCCAGccaaagatttttattttttttatttaattttttttaacaatgtatGCAATGCCATTTATGAGCCAATGCAAACAGTATAGCCATTATTCTTGCAGGAAATCATCGAAATTATACTGTAGTACATACTCTAGTTTTAAAGACACAAAAACTCACCATCaattctcattctttctcttcattaactgatttatcctggtcagggtcgtggtggggccagagcctatcccgggaacactgtgTGCGATGGATGAGTCCGTCGCAGGGCATAATTgcgcacacattcacatactcgttcacacctaggggcaatttagggTAACCAATACTCCTATTGGCAGGCCAAACTTACGAtcgatcctggagctgtgaggcggcaacgaTACCTGCTGCGCCACTCTGCTGCTCATCATTATAGATTAGGtatcaaatatacagtatattgactTGTACTTTCTACTATAAAGGCCTATCCTATTTTAAAGCACTTAGAAATTAAACAATAGGtactaatattttaaaagtataaatGATACATAAACAAGACCGGAATATCATCAAATGATTGAAACTACAGTAATTAAATCAACGATTCATTTAAAAGACTTTCTTGCAGATAGCAAGGAGACTCTATGTATTATAGGTGTCTTGCTAGACTacacaagaaacaaacaatTCGGATGATCGCGTAATGATCCTGCTGAGCCGGCAACTCTTATAACCTGCAACTCTGTTTGCACTTTAACCTCCTAAAACTAATTCACTGATCCACTCAACACCATATATGATTATATAGGCTACAatattaatacagtatataagccATTATCAGTGTTCTTACTATGGCGCACAACTCTTTGAGATATTTATGCCTTCTTTCCTTGGCTAACTAAAAGTACAAATATGGCCTAAAGCTTTAtgctttttaaacagatttcCAGTGCCAAAATACTGTCCTTTAGGACTTGTGCAGTTCAGAATGGCCTTAAGGATTTGGTTTATGTTGCAGCTTACAAAAAATGAAGGTGGGGGTAAAAATATGTTATCAGCTTACCTATTTGGAATTGTAACCAGTATGATCTGTGgtgatttatattttacaacAGCAGTTCAGCATATATTCAGTATGTCAtaataaccattttttttttaattagtagaattttacatcaaacttGTGCCAAGCTGAAAGTTAATGTCCATTAATGTCACATCACCACATTGTGATCATTTGCATCCCTTGTGCGTGAGTGCTGCGATGCTGCACTGTTTCACAAATGTGGTCCATTTTAATTTGCAAACTAACAAACGCATAGCCAGTGGCacctttaatacattttatgatcatttttaccagcatatatactttttttactcatttgtgTTGAAAGACTATTTATATATCACATAAATATTGGAAATTTTTTGAAAAGGGACAAGTGTATTGAAGCCCTAACGCCCTTACTGGGTTTATTCCCCATGAAATCCActcaaaaaaaacattttgaggATTTGCACAATGTCACTGAAAATGGGAGGGGTGATaatagcagatttttttttagtttgtattgtttatactgtatttattgtgATTGCCCTAATGACTGCAAGCAACTATGCCTCATATTCCATCGTGTTATTCCCAGTAAACATCTGTGATTGTGATAATGAACCGTAATTCTCTTGATGTTAGTTGTAGATTTGCATAGCCACATCCCATCACATTCCAATAAAAATGGGGGTTGGGGTAAGAAGGGGCTTTACAGTTCTGGTTTGATACTTTTGTTTAAGATCTCTTTTTGATGCAAACatttcagtaaatgttttttaagaAGCAACAGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403193.2 lncRNA downstream 7342 12606541 ~ 12607682 (-) True LOC113530910
TU300547 lncRNA downstream 221371 12392363 ~ 12393653 (-) True G253843
TU300430 lncRNA downstream 397280 12217424 ~ 12217744 (-) True G253749
XR_003403159.2 lncRNA downstream 464079 12143633 ~ 12150945 (-) True LOC113530483
TU300710 lncRNA upstream 7384 12661244 ~ 12709317 (-) True G253977
XR_004579658.1 lncRNA upstream 38485 12692345 ~ 12714075 (-) True LOC117599211
TU300707 lncRNA upstream 39759 12693619 ~ 12714080 (-) False LOC117599211
TU300797 lncRNA upstream 154520 12808380 ~ 12808599 (-) True G254052
TU300820 lncRNA upstream 243624 12897484 ~ 12898568 (-) False plagl2
XM_026921119.2 mRNA downstream 42516 12545673 ~ 12572508 (-) False ntsr1
XM_034311642.1 mRNA downstream 42516 12546046 ~ 12572508 (-) False ntsr1
XM_026921118.2 mRNA downstream 42516 12549940 ~ 12572508 (-) True ntsr1
XM_026920421.2 mRNA downstream 109061 12485170 ~ 12505963 (-) True snphb
XM_026920426.2 mRNA upstream 243614 12897474 ~ 12934308 (-) True plagl2
XM_026920427.2 mRNA upstream 243614 12897474 ~ 12904007 (-) False plagl2
XM_026921111.2 mRNA upstream 321584 12975444 ~ 12987137 (-) True LOC113530792
XM_034312114.1 mRNA upstream 341560 12995420 ~ 13028887 (-) False myt1b
XM_034312115.1 mRNA upstream 341560 12995420 ~ 13028887 (-) False myt1b
TU300417 other downstream 455664 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 473851 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 722022 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 722604 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 1046494 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1475356 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1475356 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1475356 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1475356 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 2045412 14699272 ~ 14704270 (-) False G255071

Expression Profile