RNA id: XM_026921388.2


Basic Information

Item Value
RNA id XM_026921388.2
length 2877
RNA type mRNA
GC content 0.42
exon number 3
gene id zgc:194242
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12401465 ~ 12406721 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACAAGCTCCGCCTCCTCGGTGACGCACAACGGAGGACTTTGTGCACAGCCGTGTGTTTATTGTGGCAGTGACTGAAGTCTGAACAGCGCCGAAGAGTGCGAAGgccttcagaaagaaaaaaTTTGCAGAATGCTATCCAGAAAACTGGGCCAACAGCTGGGGCGACCCACTCAGTCCCTCTCTGGGTGGCTGATTACCAAGTTCCTGTTGAGGCATAACCAGATCCTGGAGGAAAATGCAGTGACACTGTGTGAGATCCAGCCTGATGAGACAGTGTTGGAGCTGGGTCATGGTCCAGGCCTGGGTTTGGAGGTAGCTGTCCAGCTCCTCACAGGGCCAGGAGGAAAGCTGTTCGGGGTGGATTACTCCAACTACATGCACCACATGGCCACAGAGAGGATGCAGGCGCACATAGCCAGTGAGAAAGTGACTCTGTACTGCAGTGATGTAGCAGCAATGCCATTAGAAGACAGCAGTGTGGATAAAGTGTTCCACTGCAATTGCTACTACTTCTGGCCTGATCTGAGGGCAGGAGCTTCGGAGATACACCGAGTGATGAAACCAGGTGGGCTCATGGTGACGACCCTCAGACTGGATCGTATTGTTAGATTTGCATCTAAGAAAGTGTTTCCTGGAGAGAACTGGCGACCTGAAGCCTACATGGAGGCGCTGCAGTCCTGTGGTTTTGCAGATGTCCGAATGGAGAACAGAACTGACAAGCTTATCCCATTTCAAGCAATTTATGCCACTGCTGCAAAGTAAAGCCAGAACagatctatctgtctgtctatctgtgcctttcactcacacacttgctCATCCCCTCATCCATTCCCTCCCTTACTTACACCCTCCAATTACACACCCATttatcacttatacactcacTCCTTCACTTACACACTAACTCTCTCACTCACAAACTCCCTCCATCACTTATACACTCACTTTTTCACTCACAAACTCCCTCCatcacttatacactcacaaACTCCCTCCATCACTTATACACTCACTTTTTCACTCACAAACTCCCTCCATCACTTATACACTCACTTTTTCACTCACAAACTCCCTCCATCACTTATACACTCACTTTTTCACTCACAAACTCCCTCtatcacttatacactcacTTTTTCACTCACAAACTCCCTCCATCACTTATACACTCACTTTTTCACTTACACAATCCCTCAAACTCCTCTTACACTCTCCCTCACACTCCGTTTACACACTCCATTCATCACACTCACCCTCAGTCACACTctgctcacacactccctccctccttAAATCACCTTTGTTTTCACTCGAGAATTTTGCTACTTCCCCCCTTCTGTGTGACCACCCTGCATGCTAATGGCAGTGTAGTGGTATGAATGACAAATGCTACAGGACAATGGTGATAAATCATGATCAAATGATAACCAACTTTCTAATTGCATCAGCTCGATATTTTCTTCATCTGAATTTATAGTAAATCCATTTTATcaattcatttttgttattgtCACCTAACATACCTCACTTCCCTCACTCCAGAGGTGCATGAAAGGTGTGATGGAATGGTGACCCGCCTGCTTTTCGCCTAGTGTTACcggggataggctctggatccacaaccaccctgaccaggataaaacagttatggaaaataaatgaatcttgaagatacagtatatgtatatttctgctaattatttttatcatttagtaaaaaaaaatatatagttgtACAATGTTTGCACCAGATGAAAACATATCTTTAAGTGGATGTGAAAATGTTGGGCACTGAACAACAACTGATGTGCTTGGGTGTTTGTGCTTCATCCTTGTGGTAGTGCTGTGTGAGAGAACATCAGTGCTTCATTTTGAACACCCAAACATTGACCATAGGTTGATTGATGGGCCCCTCTCTCTGAACAACTGGTTAAACAGAAAGCAGGTTGGATAGATACGTAGCAACAGTTTTATTTTGATAATTgaattacaaaaattaattaaccTGGATTGTCATAGTCAGTGCTTTGTTTGCTTCATGAATGATTGACAAATGATCCTCATATTACTGGACCTTAGTGCCACTTTTGACACTGTGGACCACAATCTGCTTATTGGTTGTCTAAAACAGTGGGTGGTTTAACAGAGAGTGGCTCTTAAATGGTTTACCTCCTACAGCATAGGATATCCTCTGTGAATGTCAGTGATTTGGAGTTCCACAAGGTTCCATCCTTCATCTAATGAGGGAACTTCAGCCAGAAGCataatatttactttaattgCTATGCAGAAAACATACAGCTTTATGTCTTCCCCTGAAACCACGTGAAAGCTGCTCCTTAATGTCTCTCATTAATTGCCTTATAAGGATATTAAGTGTTGGATGGCATCCAGTTTCCTGGCAAGTCAGAAGATAGTATATTATTTGATCCTCCCATGTCACACTAACAGTCTTTTTAAGAATCTTGATCAATATCTGTTAAATTTTATGTCAAAATCCTTTGTGTTTGATTTGATTCAGACCCAAACATAGTCTGatacatttgttgttgttgttgttgttgttttttgttgctgtgtgtttgtgttaatttacCATTTTATGTATTCAAATTCTTATTTGATTTCTTGTACCATTTTACTCAATGTTCAGCACTTTGGTCTACACaggttgttttaaatgtgctttttaaataaattgtacttATTATTAGATGTCACATTGGATggcacaaatatttaaaaagaaagctcCTGCTTGGTAAGTGAAAGAGACTAATGTTGTCATCCCTATATTATGTAATGTTTCATGGAAGCAGTTTGATATTTTCCTGATGGTACAGCTGAAGTAGTAAAACATGTGACACACTAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300547 lncRNA downstream 7812 12392363 ~ 12393653 (-) True G253843
TU300430 lncRNA downstream 183721 12217424 ~ 12217744 (-) True G253749
XR_003403159.2 lncRNA downstream 250520 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA downstream 250604 12143714 ~ 12150861 (-) False LOC113530483
TU300190 lncRNA downstream 496779 11904277 ~ 11904686 (-) True G253538
XR_003403193.2 lncRNA upstream 199820 12606541 ~ 12607682 (-) True LOC113530910
TU300710 lncRNA upstream 254523 12661244 ~ 12709317 (-) True G253977
XR_004579658.1 lncRNA upstream 285624 12692345 ~ 12714075 (-) True LOC117599211
TU300707 lncRNA upstream 286898 12693619 ~ 12714080 (-) False LOC117599211
TU300797 lncRNA upstream 401659 12808380 ~ 12808599 (-) True G254052
XM_034311983.1 mRNA downstream 717 12395444 ~ 12400748 (-) True ube2t
XM_034311984.1 mRNA downstream 717 12395507 ~ 12400748 (-) False ube2t
XM_026920136.2 mRNA downstream 85113 12306153 ~ 12316352 (-) True commd7
XM_026920535.2 mRNA downstream 117753 12187794 ~ 12283712 (-) False nol4lb
XM_026921130.2 mRNA upstream 5353 12412074 ~ 12415966 (-) False LOC113530803
XM_026921128.2 mRNA upstream 5353 12412074 ~ 12415585 (-) True LOC113530803
XM_034311918.1 mRNA upstream 5353 12412074 ~ 12415563 (-) False LOC113530803
XM_034311917.1 mRNA upstream 15926 12422647 ~ 12430495 (-) False LOC113530362
XM_026920263.2 mRNA upstream 15926 12422647 ~ 12430471 (-) False LOC113530362
TU300417 other downstream 242105 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 260292 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 508463 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 509045 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 832935 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1722495 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1722495 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1722495 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1722495 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 2292551 14699272 ~ 14704270 (-) False G255071

Expression Profile