RNA id: XM_026921395.2


Basic Information

Item Value
RNA id XM_026921395.2
length 2353
RNA type mRNA
GC content 0.53
exon number 18
gene id cfi
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24734614 ~ 24745225 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGCTGGATaaaggacagagagaagacgacagagaggagagatagAAGGATATAGAAGGATATAGAGATAGAATGATGAGGATTACACTcgttcttcttctctctgtcctcctgcTGCAGCTCGGGTGCACAgagcgACAGCCGAAGTTCACAGACGACGTGCCCAGTCAAGATGCCGTGACTGAACAACATGCCAAGGTTCACCTGGAACAGGTAGTAGAAGACCCACCGgtgccTGATCTTCCAAACACACATCGTGAGGTACAGGTAGAACCAGAGGAGGATTCTGCCCATGAAAGCAGACGCCCATTGGAGCCGAAACCTGAATTAAaccctccacctccacctcctcgcCGTAAAGACCCGCCCCCCAAACTGCTGtcagaggagtgtgtgtctgagaaacACACTCGCTCGTCCTGCGCTAAAGTGTTCTGCCTGCCGTGGCAGCGCTGCATCAacggtcagtgtgtgtgtaaactgccCTATCAGTGTCCACGGTTCGGACCCGCGGTGTGTGGACTGGACGGGAGGAGATTCCTGTCTCTGTGCCAGGCTCAGGCCATCGCCTGCCGAGACAAAAAACCCATGTTCTCTCACTACTTACAGCTCGGAGAGTGTGCGGAGGACTCTTTTAAAGTGGAGTTGCGGGAGCTGAAGGGTCAGAAGGTGGTTCAGGTGAGCACAGTTAAAAAGACATTTCTGATCTGTGGTTCGGACTCGTGGAACATGGCAGCCGCTAACGTCGTCTGCAGACACACCGAAAAGGAccccagaGGAGCGCTGGCGTTGAGGACGAGCGAGTTTAAGGACCTGGTGGAAGGGCGTGGCTTGACCAAAGTGCAcaagtgtatgagtgtgaggtGTACGGGGGCGGAGCATACCCTGGCCGAGTGTGTACTCTACAAACCTCGCCTCATCAGTGACAACACGTCTGTTGCTACGGTAACATGCTACACGAAACAACAAGCACAGGAAGAGTGTGACAAGTTCCGCTGTGTGAATGAGAAGTGTGTGTCACTGGAACACGTCTGTGACGGAGTGGACGACTGCGGCGACAACAGCGATGAAATGTGCTGCACAGgtTGCCAAAAGGGTGCTTTCTACTGTAAAACGGGAGTGTGTCTTCCACGCTACGCCGTCGGAGATCAGATACGCGATTGTTTAGGAGGCGAAGACGAACACGAAACGTCGACACATGTCAGTGAGGTTCTTCCTAGATCAGATTCACAAACGGGACGGTTACTGCAAGAAGCAGTACAGAAAGTGGTGAAACCTGAAAAAGagaTCTGGTCGAATCCTACAGAAGatattCATAAAGCACGCAATCACACAGAGACCCTGGAGTGTGGAATTCCCAACTTAGACTACATTCATAAGACGGAGGAAGAGACACAATACAGACGCACTAAACGCGTGGTGGGGGGCGAGGAAGCTCTGCCGACTCAGATACAGTGGCAGGTGGCCGTGCAGGAAGACGGAAAAATCCACTGCGGCGGCGCTTACCTGGGCGGGTGCTGGGTTCTGACCGCCGCCCACTGTGTCAGgcagaAGCCCCAGGCGTTCCGGATTAAATTCTCTCTGTGGAAGAAGCTGTCTCTGCTGAGCACCACCGACAGCGTCCCTGTGAAGAACATCATCATTCACCGCGAGTACAACCCGCGCACCTATCAGAACGACATCGCGCTCATCCAGCTGGAGGAACTGGCCCATCAGAAGGAGTGTCTAACCCCGAACCCGGCCGTGCGGCCCGTCTGTGTCCCCTGGTCAACGGAGCAGTTTCCTCCCGGCCACACCTGCACCATCTCCGGCTGGGGACGCAACAAACAGGGAGACAGTGTGAACATACTGAAGTGGGCCAACGTGAGTCTCATCCCTTACTGCAGGTCCTACTACAAGGAACGCTTCTTCGATGGAATGATGTGTGCAGGTGATCTGGAGGGGAATGTGGACTCGTGCCAGGGCGACTCCGGAGGCCCGTTAGTGTGTAAGGATGCGAGCGGCGTGTCGTACGTGTGGGGAGTCGTGAGCTGGGGAGAAAAGTGCGGAGAAGCCGGCTACCCCGGAGTGTACACTAAAGTGGCTCACTACTTCGAGTGGATTCGGCAGCACACCGGCTGGCAAGCAGTCACCAAGTACAATCAGTGAATTCTCGCTAATAACGCTAATAACGTAGATGAAATTGACATGGATTCGGTATTTTAAAGTAAACGCCTTGTTTTCTTTAGAATTCTTGCTACACTTACAGCAACGTTATGTTGGTATAAAATTGAAACAGATGGCCGTACGACATGACGGCTGATTCCTTCAATATTTCATGTCATGCTTCTCATTAAAAGTCTTACAAACCAA

Function

GO:

id name namespace
GO:0061304 retinal blood vessel morphogenesis biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01333 CFI; complement factor I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309036 lncRNA downstream 4071 24730292 ~ 24730543 (-) True G260897
TU309034 lncRNA downstream 6245 24725850 ~ 24728369 (-) True G260895
TU309033 lncRNA downstream 9237 24724222 ~ 24725377 (-) True G260894
TU309007 lncRNA downstream 33571 24681825 ~ 24701043 (-) True G260873
TU309005 lncRNA downstream 36190 24697969 ~ 24698424 (-) True G260871
TU309075 lncRNA upstream 98802 24844027 ~ 24864890 (-) True G260921
TU309098 lncRNA upstream 125489 24870714 ~ 24873747 (-) True G260942
TU309082 lncRNA upstream 215831 24961056 ~ 24964895 (-) False nfxl1
TU309120 lncRNA upstream 229490 24974715 ~ 24975307 (-) True G260962
TU309132 lncRNA upstream 296926 25042151 ~ 25042595 (-) False G260972
XM_026921207.2 mRNA downstream 29285 24702380 ~ 24705329 (-) True LOC113530848
XM_034311696.1 mRNA downstream 30888 24702380 ~ 24703726 (-) False LOC113530848
XM_034311694.1 mRNA downstream 88881 24638291 ~ 24645733 (-) True LOC113530806
XM_026921135.2 mRNA downstream 89842 24638291 ~ 24644772 (-) False LOC113530806
XM_034311592.1 mRNA downstream 136955 24592873 ~ 24597659 (-) False prelid1b
XM_034312203.1 mRNA upstream 658 24745883 ~ 24765073 (-) False LOC113530579
XM_034312202.1 mRNA upstream 658 24745883 ~ 24760695 (-) True LOC113530579
XM_034312218.1 mRNA upstream 26035 24771260 ~ 24774653 (-) True LOC113530888
XM_034312219.1 mRNA upstream 29861 24775086 ~ 24782044 (-) True LOC117599302
XM_026921301.2 mRNA upstream 44533 24789758 ~ 24795423 (-) False si:ch1073-157b13.1
XR_004579755.1 other downstream 226147 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 226281 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 970451 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1494268 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 2285187 22446030 ~ 22449427 (-) True G259306
XR_004579701.1 other upstream 42465 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 135733 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 239234 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 245351 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 295566 25040791 ~ 25042595 (-) True G260972

Expression Profile